Wall clock time and date at job start Tue Mar 31 2020 23:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.46109 * 2 1 4 4 C 1.54376 * 110.41326 * 237.58539 * 2 1 3 5 5 H 1.09002 * 110.32375 * 336.36377 * 4 2 1 6 6 N 1.46499 * 110.32692 * 98.47119 * 4 2 1 7 7 C 1.34771 * 119.99999 * 203.57100 * 6 4 2 8 8 O 1.21560 * 120.00271 * 0.02562 * 7 6 4 9 9 C 1.47757 * 119.99859 * 180.02562 * 7 6 4 10 10 C 1.39346 * 124.11899 * 180.02562 * 9 7 6 11 11 N 1.30091 * 112.14683 * 179.97438 * 10 9 7 12 12 S 1.55918 * 108.75554 * 359.97438 * 11 10 9 13 13 N 1.31493 * 124.11631 * 359.97438 * 9 7 6 14 14 C 1.54264 * 105.14779 * 217.42106 * 4 2 1 15 15 C 1.54379 * 105.06174 * 359.94629 * 14 4 2 16 16 N 1.48568 * 104.59098 * 23.85662 * 15 14 4 17 17 C 1.46906 * 110.99272 * 200.96102 * 16 15 14 18 18 C 1.50696 * 109.46932 * 293.84018 * 17 16 15 19 19 O 1.21289 * 120.00358 * 354.18694 * 18 17 16 20 20 N 1.34774 * 119.99762 * 174.17770 * 18 17 16 21 21 C 1.37103 * 120.00155 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99977 * 0.02562 * 21 20 18 23 23 C 1.38944 * 120.00132 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00074 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99953 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47011 * 90.00258 * 25 23 21 27 27 H 1.48496 * 109.47033 * 210.00243 * 25 23 21 28 28 H 1.48499 * 109.46950 * 330.00218 * 25 23 21 29 29 H 1.09000 * 109.47116 * 182.41101 * 1 2 3 30 30 H 1.08995 * 109.47328 * 302.41548 * 1 2 3 31 31 H 1.09003 * 109.47155 * 62.41504 * 1 2 3 32 32 H 0.97004 * 119.99284 * 23.57348 * 6 4 2 33 33 H 1.08006 * 123.92159 * 0.23918 * 10 9 7 34 34 H 1.09004 * 110.31999 * 118.84303 * 14 4 2 35 35 H 1.09001 * 110.32339 * 241.04842 * 14 4 2 36 36 H 1.08998 * 110.40995 * 142.62941 * 15 14 4 37 37 H 1.08993 * 110.41286 * 264.95665 * 15 14 4 38 38 H 1.08991 * 109.47259 * 53.84548 * 17 16 15 39 39 H 1.09001 * 109.46837 * 173.85123 * 17 16 15 40 40 H 0.97000 * 120.00243 * 0.02562 * 20 18 17 41 41 H 0.97009 * 120.00067 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0685 -0.7756 -1.2214 5 1 1.3229 -1.4868 -1.5770 6 7 2.4356 0.1537 -2.2928 7 6 2.4705 -0.2716 -3.5711 8 8 2.1968 -1.4262 -3.8353 9 6 2.8413 0.6654 -4.6517 10 6 2.9043 0.3185 -5.9998 11 7 3.2543 1.3229 -6.7488 12 16 3.4783 2.5709 -5.8414 13 7 3.1512 1.9286 -4.4583 14 6 3.3174 -1.5208 -0.7071 15 6 3.4310 -1.1326 0.7828 16 7 2.0509 -0.7474 1.1755 17 6 2.0624 0.0998 2.3756 18 6 2.5567 -0.7021 3.5518 19 8 2.7684 -1.8902 3.4299 20 7 2.7638 -0.0991 4.7392 21 6 3.2140 -0.8285 5.8093 22 1 3.4031 -1.8863 5.7006 23 6 3.4280 -0.2067 7.0332 24 7 3.1983 1.0804 7.1654 25 14 4.0421 -1.2005 8.4910 26 1 5.5270 -1.1898 8.5070 27 1 3.5292 -0.6019 9.7494 28 1 3.5583 -2.5997 8.3752 29 1 -0.3633 -1.0268 0.0432 30 1 -0.3634 0.5509 0.8675 31 1 -0.3634 0.4759 -0.9109 32 1 2.6537 1.0751 -2.0820 33 1 2.6836 -0.6684 -6.3791 34 1 3.1840 -2.5979 -0.8086 35 1 4.2036 -1.1953 -1.2518 36 1 3.7704 -1.9841 1.3726 37 1 4.1121 -0.2906 0.9053 38 1 2.7229 0.9513 2.2130 39 1 1.0525 0.4567 2.5780 40 1 2.5943 0.8510 4.8368 41 1 3.3474 1.5144 8.0201 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316777617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:43 Heat of formation + Delta-G solvation = -25.125227 kcal Electronic energy + Delta-G solvation = -26437.989704 eV Core-core repulsion = 22479.202935 eV Total energy + Delta-G solvation = -3958.786770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.22727 -41.07323 -40.09693 -39.05395 -36.05743 -35.57421 -34.57591 -33.29648 -32.41691 -32.04350 -28.83431 -27.94100 -26.42277 -25.86962 -24.14517 -22.50024 -21.60069 -21.30767 -20.81666 -20.36928 -19.84261 -18.82757 -17.77029 -17.53274 -17.14042 -16.61745 -16.48795 -16.37327 -16.18285 -15.79856 -15.49786 -15.38295 -15.21508 -14.68869 -14.44438 -13.90804 -13.77011 -13.47324 -13.27887 -12.98502 -12.85787 -12.78168 -12.56345 -12.47063 -12.38807 -12.37797 -12.26550 -12.13035 -12.10492 -12.08603 -11.69626 -11.47099 -11.26139 -10.38801 -10.28883 -10.09707 -9.99569 -9.41671 -8.45896 -5.94075 -0.66194 0.34181 0.44434 0.62453 1.37880 1.41778 1.54299 1.86047 1.96751 2.06771 2.29385 2.81853 3.20877 3.29463 3.38879 3.42105 3.68859 3.76998 4.01301 4.03758 4.14946 4.23279 4.33250 4.40974 4.42298 4.48786 4.55115 4.69954 4.81054 4.88477 4.97862 5.03979 5.14602 5.26517 5.35728 5.37104 5.42153 5.81866 5.92633 6.08384 6.33205 6.61883 6.95395 7.14359 7.57785 8.14006 8.71520 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025682 B = 0.001995 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.004679 B =14029.794344 C =14357.528609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.057 3.943 3 H 0.076 0.924 4 C 0.155 3.845 5 H 0.098 0.902 6 N -0.691 5.691 7 C 0.608 3.392 8 O -0.549 6.549 9 C -0.005 4.005 10 C 0.089 3.911 11 N -0.601 5.601 12 S 0.797 5.203 13 N -0.562 5.562 14 C -0.124 4.124 15 C 0.039 3.961 16 N -0.497 5.497 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.416 0.584 33 H 0.224 0.776 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.113 0.887 40 H 0.396 0.604 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 8.700 -26.117 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.052 4.052 3 H 0.094 0.906 4 C 0.049 3.951 5 H 0.116 0.884 6 N -0.343 5.343 7 C 0.389 3.611 8 O -0.426 6.426 9 C -0.178 4.178 10 C -0.103 4.103 11 N -0.443 5.443 12 S 0.838 5.162 13 N -0.414 5.414 14 C -0.163 4.163 15 C -0.089 4.089 16 N -0.222 5.222 17 C -0.083 4.083 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.254 0.746 33 H 0.240 0.760 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.230 0.770 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.256 8.694 -26.589 28.002 hybrid contribution 0.433 -0.679 1.513 1.714 sum -0.823 8.015 -25.076 26.339 Atomic orbital electron populations 1.21711 0.92005 1.02721 1.02637 1.22956 0.97535 0.96244 0.88425 0.90628 1.21657 0.96582 0.91040 0.85781 0.88369 1.45810 1.68209 1.15201 1.05033 1.16897 0.76961 0.85470 0.81789 1.90841 1.50126 1.18432 1.83222 1.22225 1.09086 0.90349 0.96111 1.23883 0.97706 1.00912 0.87788 1.72191 1.23381 1.08246 1.40475 1.78874 1.41722 1.15646 0.79951 1.72272 1.19873 1.12923 1.36378 1.22669 0.98259 1.01326 0.94036 1.23024 0.89690 1.00403 0.95760 1.65119 1.19160 1.36401 1.01564 1.21929 1.03161 0.93917 0.89251 1.20722 0.83030 0.88487 0.84872 1.90493 1.57383 1.17547 1.84638 1.41926 1.59003 1.11497 1.08813 1.19629 1.42446 0.94416 0.89493 0.90425 1.26007 0.97343 0.96998 1.00959 1.69669 1.49115 1.10079 1.27279 0.84954 0.78497 0.77970 0.77085 1.19680 1.19555 1.19895 0.92455 0.91849 0.90372 0.74596 0.75993 0.90810 0.90049 0.91814 0.93819 0.91080 0.86948 0.77022 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.31 71.98 0.67 -1.97 16 2 C 0.06 1.26 2.60 45.03 0.12 1.38 16 3 H 0.08 1.41 7.59 -2.39 -0.02 1.39 16 4 C 0.15 3.41 2.93 45.89 0.13 3.54 16 5 H 0.10 2.39 7.32 -2.39 -0.02 2.38 16 6 N -0.69 -12.63 5.03 -441.25 -2.22 -14.85 16 7 C 0.61 12.43 7.82 86.76 0.68 13.11 16 8 O -0.55 -14.40 16.48 -3.91 -0.06 -14.46 16 9 C 0.00 -0.08 6.81 41.98 0.29 0.21 16 10 C 0.09 1.31 11.22 85.22 0.96 2.27 16 11 N -0.60 -8.43 11.41 -92.47 -1.05 -9.48 16 12 S 0.80 7.47 23.69 -56.49 -1.34 6.14 16 13 N -0.56 -7.96 11.00 -80.58 -0.89 -8.85 16 14 C -0.12 -3.14 6.79 31.49 0.21 -2.93 16 15 C 0.04 1.24 5.73 86.45 0.49 1.74 16 16 N -0.50 -15.59 4.78 -860.83 -4.11 -19.70 16 17 C 0.05 1.64 5.24 85.55 0.45 2.09 16 18 C 0.44 20.83 7.47 87.66 0.66 21.49 16 19 O -0.61 -33.94 14.39 -3.06 -0.04 -33.99 16 20 N -0.57 -29.26 5.29 -306.99 -1.62 -30.89 16 21 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 22 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 23 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 24 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 25 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.23 7.52 -2.39 -0.02 1.21 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.42 6.27 7.95 -92.71 -0.74 5.53 16 33 H 0.22 2.64 8.06 -2.91 -0.02 2.62 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 1.88 7.95 -2.39 -0.02 1.86 16 36 H 0.06 2.53 6.85 -2.39 -0.02 2.51 16 37 H 0.04 1.31 7.88 -2.39 -0.02 1.29 16 38 H 0.07 2.08 7.96 -2.39 -0.02 2.06 16 39 H 0.11 3.32 7.45 -2.39 -0.02 3.30 16 40 H 0.40 19.07 7.90 -92.71 -0.73 18.33 16 41 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -71.55 361.41 -3.46 -75.01 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.37 Total: 32.38 kcal Atomic # 6 Polarization: 16.84 SS G_CDS: 5.94 Total: 22.78 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -9.61 Total: -132.88 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.11 Total: -48.45 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.34 Total: 6.14 kcal Total: -71.55 -3.46 -75.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316777617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.889 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds