Wall clock time and date at job start Tue Mar 31 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47263 * 300.00758 * 3 2 1 6 6 H 1.48500 * 109.46973 * 60.00410 * 3 2 1 7 7 C 1.38946 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00693 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00188 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99924 * 180.02562 * 13 12 10 15 15 C 1.53786 * 113.61608 * 105.85932 * 14 13 12 16 16 C 1.53962 * 87.01719 * 89.22903 * 15 14 13 17 17 C 1.52998 * 113.74183 * 139.94755 * 16 15 14 18 18 N 1.46499 * 109.47146 * 87.39824 * 17 16 15 19 19 C 1.34782 * 119.99464 * 179.97438 * 18 17 16 20 20 O 1.21623 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.47176 * 119.99663 * 180.02562 * 19 18 17 22 22 C 1.38244 * 128.47755 * 179.70557 * 21 19 18 23 23 N 1.31235 * 111.88927 * 179.81104 * 22 21 19 24 24 N 1.27339 * 120.03790 * 0.53256 * 23 22 21 25 25 S 1.56635 * 109.73951 * 359.69264 * 24 23 22 26 26 C 1.53781 * 113.61428 * 203.46824 * 14 13 12 27 27 H 0.97005 * 120.00057 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99412 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47122 * 60.00287 * 12 10 9 30 30 H 1.09001 * 109.46900 * 300.00559 * 12 10 9 31 31 H 1.00902 * 110.99778 * 303.95198 * 13 12 10 32 32 H 1.09002 * 112.84869 * 334.66356 * 14 13 12 33 33 H 1.08993 * 113.61491 * 203.75024 * 15 14 13 34 34 H 1.09000 * 113.61138 * 334.65362 * 15 14 13 35 35 H 1.08997 * 113.53543 * 270.80998 * 16 15 14 36 36 H 1.09004 * 109.46932 * 207.40247 * 17 16 15 37 37 H 1.09000 * 109.46657 * 327.39883 * 17 16 15 38 38 H 0.96996 * 120.00000 * 0.02562 * 18 17 16 39 39 H 1.07997 * 124.04952 * 359.97438 * 22 21 19 40 40 H 1.09001 * 113.61695 * 25.34696 * 26 14 13 41 41 H 1.08996 * 113.61580 * 156.16974 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0027 14 6 1.4979 -7.2708 -0.0039 15 6 1.5432 -7.9950 -1.3598 16 6 2.8517 -8.6470 -0.8771 17 6 2.9841 -10.1216 -1.2630 18 7 3.5871 -10.2257 -2.5941 19 6 3.8021 -11.4376 -3.1434 20 8 3.4952 -12.4446 -2.5343 21 6 4.4084 -11.5423 -4.4804 22 6 4.7098 -12.6828 -5.2013 23 7 5.2426 -12.3985 -6.3664 24 7 5.4314 -11.1847 -6.7019 25 16 4.9378 -10.2365 -5.5571 26 6 2.3402 -8.4289 0.5567 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6167 -4.9201 -0.8919 30 1 0.6173 -4.9212 0.8880 31 1 2.8331 -5.9121 -0.7840 32 1 0.4979 -7.2104 0.4257 33 1 0.7286 -8.7048 -1.5031 34 1 1.6758 -7.3242 -2.2087 35 1 3.7419 -8.0653 -1.1163 36 1 3.6166 -10.6319 -0.5366 37 1 1.9972 -10.5842 -1.2739 38 1 3.8321 -9.4226 -3.0797 39 1 4.5263 -13.6870 -4.8489 40 1 3.1153 -8.1081 1.2527 41 1 1.7439 -9.2571 0.9396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316814355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:49 Heat of formation + Delta-G solvation = 25.129535 kcal Electronic energy + Delta-G solvation = -25198.357117 eV Core-core repulsion = 21241.749557 eV Total energy + Delta-G solvation = -3956.607560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34767 -40.29844 -39.38464 -38.08152 -35.34811 -34.09924 -33.22618 -32.58108 -31.24609 -29.14554 -27.56743 -26.21953 -25.84259 -24.11271 -23.45231 -22.30335 -21.18288 -19.85561 -19.36146 -19.09349 -18.05576 -17.88311 -16.64719 -16.47607 -16.12470 -15.89868 -15.57119 -15.32476 -15.03979 -14.68204 -14.47051 -14.44742 -13.92431 -13.76395 -13.22366 -13.17861 -12.82499 -12.70752 -12.50110 -12.39695 -11.99831 -11.61626 -11.57145 -11.12180 -11.04637 -10.92373 -10.75307 -10.63052 -10.53734 -10.38993 -10.37757 -10.32364 -10.25764 -9.61235 -9.56398 -8.51697 -8.12479 -8.00573 -6.46053 -3.86993 -0.80713 0.26645 0.94700 1.44957 2.43818 2.44992 3.13172 3.24190 3.31135 3.49145 3.85514 3.97648 4.10137 4.16496 4.21678 4.31500 4.43355 4.51619 4.80118 4.95668 5.04470 5.11581 5.21438 5.28922 5.33261 5.51230 5.54536 5.64441 5.71914 5.75009 5.89457 6.00131 6.02164 6.11331 6.24950 6.78536 7.10859 7.18161 7.48728 7.51342 7.58107 8.01967 8.56310 9.13545 9.49596 10.00562 10.71632 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.001805 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.285922 B =15507.107959 C =16851.719725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.439 3.561 11 O -0.585 6.585 12 C 0.051 3.949 13 N -0.648 5.648 14 C 0.068 3.932 15 C -0.168 4.168 16 C -0.126 4.126 17 C 0.130 3.870 18 N -0.716 5.716 19 C 0.601 3.399 20 O -0.517 6.517 21 C -0.291 4.291 22 C 0.075 3.925 23 N -0.252 5.252 24 N -0.254 5.254 25 S 0.430 5.570 26 C -0.120 4.120 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.350 0.650 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.402 0.598 39 H 0.216 0.784 40 H 0.082 0.918 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.884 -22.298 -7.214 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.469 6.469 12 C -0.081 4.081 13 N -0.280 5.280 14 C -0.044 4.044 15 C -0.207 4.207 16 C -0.145 4.145 17 C 0.008 3.992 18 N -0.368 5.368 19 C 0.384 3.616 20 O -0.393 6.393 21 C -0.432 4.432 22 C -0.092 4.092 23 N -0.116 5.116 24 N -0.235 5.235 25 S 0.564 5.436 26 C -0.159 4.159 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.236 0.764 39 H 0.233 0.767 40 H 0.101 0.899 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.142 -21.745 -7.563 23.392 hybrid contribution -0.950 0.165 -0.258 0.998 sum 3.192 -21.580 -7.822 23.175 Atomic orbital electron populations 1.69617 1.05949 1.28105 1.50559 1.25272 0.95647 0.99769 0.97287 0.85798 0.79711 0.81094 0.77729 1.19204 1.20764 1.20716 1.19752 0.93404 0.82202 1.47545 0.87847 1.41875 1.09224 1.04630 1.64221 1.19811 0.88386 0.84735 0.84584 1.90523 1.13754 1.87081 1.55529 1.21713 0.94352 0.90801 1.01284 1.59939 1.18095 0.99136 1.50810 1.22583 0.97360 0.89365 0.95058 1.23857 0.97424 1.00578 0.98882 1.22883 0.98912 0.93937 0.98740 1.21568 0.98686 0.96955 0.82004 1.45933 1.63383 1.07253 1.20236 1.16471 0.78359 0.84210 0.82579 1.90869 1.51105 1.35677 1.61676 1.28096 1.13497 0.98090 1.03513 1.24500 0.95122 1.01639 0.87908 1.70723 1.15363 1.09077 1.16430 1.78911 1.20271 1.01120 1.23195 1.82741 1.39799 1.17717 1.03306 1.23021 1.00181 0.97637 0.95051 0.91890 0.77449 0.93755 0.89484 0.82952 0.89669 0.89582 0.91284 0.88144 0.90626 0.90675 0.76375 0.76718 0.89881 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.04 13.05 55.50 0.72 -23.32 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.61 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 8 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 10 C 0.44 9.94 7.82 -10.99 -0.09 9.85 16 11 O -0.58 -15.30 15.78 5.55 0.09 -15.21 16 12 C 0.05 0.83 6.02 -4.98 -0.03 0.80 16 13 N -0.65 -9.31 6.19 -107.13 -0.66 -9.97 16 14 C 0.07 0.69 4.26 -66.90 -0.28 0.41 16 15 C -0.17 -1.33 7.18 -25.82 -0.19 -1.52 16 16 C -0.13 -0.92 3.50 -89.71 -0.31 -1.24 16 17 C 0.13 0.92 5.52 -4.04 -0.02 0.89 16 18 N -0.72 -4.80 5.55 -61.46 -0.34 -5.14 16 19 C 0.60 5.12 7.80 -12.63 -0.10 5.02 16 20 O -0.52 -6.06 16.98 5.26 0.09 -5.97 16 21 C -0.29 -2.11 6.81 -35.95 -0.25 -2.36 16 22 C 0.08 0.56 11.55 -17.80 -0.21 0.36 16 23 N -0.25 -2.35 11.54 30.36 0.35 -2.00 16 24 N -0.25 -2.31 12.51 60.35 0.75 -1.56 16 25 S 0.43 2.61 23.05 -107.50 -2.48 0.13 16 26 C -0.12 -1.02 7.44 -25.92 -0.19 -1.22 16 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 28 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.33 8.13 -51.93 -0.42 0.90 16 31 H 0.35 5.12 7.79 -39.29 -0.31 4.82 16 32 H 0.09 0.85 7.88 -51.93 -0.41 0.44 16 33 H 0.09 0.61 7.91 -51.93 -0.41 0.20 16 34 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 35 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.55 7.86 -51.93 -0.41 0.14 16 38 H 0.40 1.94 7.90 -40.82 -0.32 1.62 16 39 H 0.22 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.09 0.60 8.10 -51.93 -0.42 0.18 16 LS Contribution 371.45 15.07 5.60 5.60 Total: -1.00 -33.40 371.45 -7.93 -41.33 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -5.06 Total: 11.22 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.91 Total: 3.18 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.77 Total: -55.89 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.18 Total: -21.18 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -2.48 Total: 0.13 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.40 -7.93 -41.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316814355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.456 kcal (2) G-P(sol) polarization free energy of solvation -33.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds