Wall clock time and date at job start Tue Mar 31 2020 22:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86805 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47173 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47263 * 300.00758 * 3 2 1 6 6 H 1.48500 * 109.46973 * 60.00410 * 3 2 1 7 7 C 1.38946 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00040 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00693 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99711 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00188 * 180.02562 * 10 9 7 13 13 N 1.46895 * 109.47106 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99924 * 180.02562 * 13 12 10 15 15 C 1.53786 * 113.61608 * 105.85932 * 14 13 12 16 16 C 1.53962 * 87.01719 * 89.22903 * 15 14 13 17 17 C 1.52998 * 113.74183 * 139.94755 * 16 15 14 18 18 N 1.46499 * 109.47146 * 87.39824 * 17 16 15 19 19 C 1.34782 * 119.99464 * 179.97438 * 18 17 16 20 20 O 1.21623 * 120.00211 * 0.02562 * 19 18 17 21 21 C 1.47176 * 119.99663 * 180.02562 * 19 18 17 22 22 C 1.38244 * 128.47755 * 179.70557 * 21 19 18 23 23 N 1.31235 * 111.88927 * 179.81104 * 22 21 19 24 24 N 1.27339 * 120.03790 * 0.53256 * 23 22 21 25 25 S 1.56635 * 109.73951 * 359.69264 * 24 23 22 26 26 C 1.53781 * 113.61428 * 203.46824 * 14 13 12 27 27 H 0.97005 * 120.00057 * 359.97438 * 1 2 3 28 28 H 0.97006 * 119.99412 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.47122 * 60.00287 * 12 10 9 30 30 H 1.09001 * 109.46900 * 300.00559 * 12 10 9 31 31 H 1.00902 * 110.99778 * 303.95198 * 13 12 10 32 32 H 1.09002 * 112.84869 * 334.66356 * 14 13 12 33 33 H 1.08993 * 113.61491 * 203.75024 * 15 14 13 34 34 H 1.09000 * 113.61138 * 334.65362 * 15 14 13 35 35 H 1.08997 * 113.53543 * 270.80998 * 16 15 14 36 36 H 1.09004 * 109.46932 * 207.40247 * 17 16 15 37 37 H 1.09000 * 109.46657 * 327.39883 * 17 16 15 38 38 H 0.96996 * 120.00000 * 0.02562 * 18 17 16 39 39 H 1.07997 * 124.04952 * 359.97438 * 22 21 19 40 40 H 1.09001 * 113.61695 * 25.34696 * 26 14 13 41 41 H 1.08996 * 113.61580 * 156.16974 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3966 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0021 12 6 1.2437 -4.8630 -0.0022 13 7 2.1982 -5.9795 -0.0027 14 6 1.4979 -7.2708 -0.0039 15 6 1.5432 -7.9950 -1.3598 16 6 2.8517 -8.6470 -0.8771 17 6 2.9841 -10.1216 -1.2630 18 7 3.5871 -10.2257 -2.5941 19 6 3.8021 -11.4376 -3.1434 20 8 3.4952 -12.4446 -2.5343 21 6 4.4084 -11.5423 -4.4804 22 6 4.7098 -12.6828 -5.2013 23 7 5.2426 -12.3985 -6.3664 24 7 5.4314 -11.1847 -6.7019 25 16 4.9378 -10.2365 -5.5571 26 6 2.3402 -8.4289 0.5567 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6167 -4.9201 -0.8919 30 1 0.6173 -4.9212 0.8880 31 1 2.8331 -5.9121 -0.7840 32 1 0.4979 -7.2104 0.4257 33 1 0.7286 -8.7048 -1.5031 34 1 1.6758 -7.3242 -2.2087 35 1 3.7419 -8.0653 -1.1163 36 1 3.6166 -10.6319 -0.5366 37 1 1.9972 -10.5842 -1.2739 38 1 3.8321 -9.4226 -3.0797 39 1 4.5263 -13.6870 -4.8489 40 1 3.1153 -8.1081 1.2527 41 1 1.7439 -9.2571 0.9396 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316814355.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:48 Heat of formation + Delta-G solvation = -1.760639 kcal Electronic energy + Delta-G solvation = -25199.523162 eV Core-core repulsion = 21241.749557 eV Total energy + Delta-G solvation = -3957.773605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95078 -41.00985 -40.32873 -39.67521 -36.24298 -35.85543 -34.35659 -33.26812 -33.16191 -29.89297 -28.47235 -27.53702 -26.50411 -25.68476 -24.19771 -22.97645 -21.81406 -21.09554 -20.43781 -19.91298 -19.84138 -18.61892 -17.68422 -17.30168 -17.09437 -16.90281 -16.51015 -16.28636 -16.20653 -15.85463 -15.68092 -15.51973 -15.10011 -14.89667 -14.39127 -14.10349 -13.84567 -13.60752 -13.47822 -13.21989 -13.18616 -13.03059 -12.92050 -12.62342 -12.39422 -12.11043 -11.77192 -11.62291 -11.50416 -11.35797 -11.23611 -11.22068 -11.02936 -10.96186 -10.31171 -10.22112 -10.00264 -9.23478 -8.46000 -5.94427 -1.39427 -0.27278 0.38344 0.84784 1.37399 1.43094 1.56863 1.81325 1.84147 2.06860 2.29800 2.92399 2.93400 3.21721 3.49429 3.55764 3.61408 3.65365 3.78199 3.86518 4.09251 4.31975 4.38128 4.50556 4.55118 4.57439 4.69860 4.73381 4.88336 4.92059 4.98327 5.10344 5.28944 5.32404 5.42251 5.46149 5.95709 6.19732 6.21661 6.49292 6.53279 6.61289 6.88237 7.13943 7.58011 8.13008 8.71495 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.001805 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.285922 B =15507.107959 C =16851.719725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.992 3.008 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.067 3.933 13 N -0.664 5.664 14 C 0.057 3.943 15 C -0.156 4.156 16 C -0.114 4.114 17 C 0.135 3.865 18 N -0.707 5.707 19 C 0.604 3.396 20 O -0.552 6.552 21 C -0.301 4.301 22 C 0.076 3.924 23 N -0.277 5.277 24 N -0.290 5.290 25 S 0.499 5.501 26 C -0.116 4.116 27 H 0.277 0.723 28 H 0.396 0.604 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.346 0.654 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.412 0.588 39 H 0.231 0.769 40 H 0.066 0.934 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -22.485 -7.397 23.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.066 4.066 13 N -0.296 5.296 14 C -0.054 4.054 15 C -0.195 4.195 16 C -0.133 4.133 17 C 0.012 3.988 18 N -0.358 5.358 19 C 0.388 3.612 20 O -0.431 6.431 21 C -0.443 4.443 22 C -0.092 4.092 23 N -0.140 5.140 24 N -0.271 5.271 25 S 0.634 5.366 26 C -0.155 4.155 27 H 0.087 0.913 28 H 0.230 0.770 29 H 0.086 0.914 30 H 0.120 0.880 31 H 0.166 0.834 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.084 0.916 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.403 -21.930 -7.762 23.511 hybrid contribution -0.723 0.234 -0.158 0.776 sum 2.681 -21.695 -7.920 23.251 Atomic orbital electron populations 1.69673 1.06795 1.29194 1.50459 1.26026 0.96543 1.02399 0.96379 0.84882 0.78070 0.77195 0.78268 1.19768 1.19624 1.19759 1.19694 0.92697 0.84045 1.49728 0.90303 1.41951 1.09356 1.04751 1.65067 1.20939 0.88276 0.86218 0.82083 1.90491 1.15866 1.87999 1.56659 1.21553 0.94039 0.87920 1.03048 1.59935 1.18359 1.00209 1.51060 1.22706 0.97619 0.87867 0.97171 1.23781 0.98031 1.00331 0.97347 1.22754 0.98660 0.94007 0.97899 1.21508 0.98804 0.96505 0.81945 1.45874 1.62604 1.07217 1.20142 1.16542 0.77898 0.84080 0.82675 1.90854 1.52776 1.36816 1.62663 1.28035 1.13935 0.98945 1.03357 1.24779 0.94462 1.02537 0.87415 1.70767 1.16447 1.09428 1.17358 1.78692 1.21661 1.01721 1.25071 1.82425 1.37411 1.15596 1.01215 1.23024 0.99717 0.97423 0.95295 0.91341 0.76968 0.91401 0.87958 0.83414 0.88958 0.87940 0.91440 0.88545 0.90972 0.90342 0.75199 0.75254 0.91560 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.68 13.05 21.66 0.28 -48.40 16 2 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 3 Si 0.99 42.11 29.55 68.60 2.03 44.13 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.33 -18.45 9.68 84.04 0.81 -17.63 16 8 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 9 N -0.57 -28.51 5.29 -306.99 -1.62 -30.13 16 10 C 0.44 19.85 7.82 87.66 0.69 20.53 16 11 O -0.62 -33.22 15.78 -3.07 -0.05 -33.27 16 12 C 0.07 2.08 6.02 85.56 0.52 2.60 16 13 N -0.66 -18.20 6.19 -492.86 -3.05 -21.25 16 14 C 0.06 1.03 4.26 45.44 0.19 1.23 16 15 C -0.16 -2.04 7.18 31.18 0.22 -1.82 16 16 C -0.11 -1.43 3.50 -10.21 -0.04 -1.47 16 17 C 0.13 1.61 5.52 86.38 0.48 2.09 16 18 N -0.71 -8.10 5.55 -466.61 -2.59 -10.69 16 19 C 0.60 9.47 7.80 86.59 0.68 10.14 16 20 O -0.55 -12.43 16.98 -4.10 -0.07 -12.50 16 21 C -0.30 -4.00 6.81 24.62 0.17 -3.83 16 22 C 0.08 1.08 11.55 84.78 0.98 2.06 16 23 N -0.28 -5.04 11.54 -57.87 -0.67 -5.71 16 24 N -0.29 -5.08 12.51 37.02 0.46 -4.61 16 25 S 0.50 5.28 23.05 -56.49 -1.30 3.98 16 26 C -0.12 -1.74 7.44 31.12 0.23 -1.51 16 27 H 0.28 13.70 8.31 -92.70 -0.77 12.93 16 28 H 0.40 18.66 7.90 -92.70 -0.73 17.93 16 29 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.10 2.92 8.13 -2.39 -0.02 2.90 16 31 H 0.35 9.82 7.79 -89.69 -0.70 9.12 16 32 H 0.09 1.57 7.88 -2.39 -0.02 1.56 16 33 H 0.10 1.07 7.91 -2.39 -0.02 1.05 16 34 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.10 1.33 8.05 -2.39 -0.02 1.31 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 0.94 7.86 -2.39 -0.02 0.93 16 38 H 0.41 3.04 7.90 -92.71 -0.73 2.31 16 39 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -72.77 371.45 -2.24 -75.01 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: -1.05 Total: 31.33 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 5.39 Total: 12.13 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -7.19 Total: -120.80 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -0.12 Total: -45.77 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 5.28 SS G_CDS: -1.30 Total: 3.98 kcal Total: -72.77 -2.24 -75.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316814355.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.250 kcal (2) G-P(sol) polarization free energy of solvation -72.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds