Wall clock time and date at job start Tue Mar 31 2020 22:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 120.00281 * 2 1 4 4 H 1.48503 * 109.46999 * 270.00074 * 3 2 1 5 5 H 1.48499 * 109.46709 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47444 * 149.99838 * 3 2 1 7 7 C 1.38803 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99434 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00358 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99889 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47138 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00248 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00158 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00037 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.85225 * 336.19984 * 14 13 11 16 16 C 1.53782 * 113.61243 * 107.50505 * 14 13 11 17 17 C 1.53784 * 87.08299 * 89.11748 * 16 14 13 18 18 H 1.09000 * 113.68886 * 270.87246 * 17 16 14 19 19 N 1.46898 * 113.61583 * 139.97941 * 17 16 14 20 20 C 1.46906 * 110.99888 * 107.50509 * 19 17 16 21 21 C 1.50699 * 109.47140 * 179.97438 * 20 19 17 22 22 C 1.38229 * 120.40333 * 269.72396 * 21 20 19 23 23 N 1.31854 * 120.81939 * 179.72765 * 22 21 20 24 24 C 1.31868 * 121.74820 * 0.53738 * 23 22 21 25 25 C 1.38430 * 120.72813 * 359.74847 * 24 23 22 26 26 F 1.35095 * 120.44490 * 179.97438 * 25 24 23 27 27 C 1.38588 * 120.40420 * 89.99988 * 21 20 19 28 28 C 1.53781 * 87.08004 * 25.43279 * 17 16 14 29 29 H 0.96996 * 119.99848 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47499 * 59.99776 * 10 9 7 31 31 H 1.09002 * 109.47001 * 299.99385 * 10 9 7 32 32 H 0.96993 * 120.00262 * 0.02562 * 13 11 10 33 33 H 1.09000 * 113.61581 * 334.56641 * 16 14 13 34 34 H 1.09000 * 113.61639 * 203.66367 * 16 14 13 35 35 H 1.00901 * 111.00121 * 343.55095 * 19 17 16 36 36 H 1.09004 * 109.47040 * 299.99934 * 20 19 17 37 37 H 1.09000 * 109.47033 * 59.99886 * 20 19 17 38 38 H 1.08002 * 119.59359 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.63633 * 179.73370 * 24 23 22 40 40 H 1.07999 * 120.80153 * 0.02562 * 27 21 20 41 41 H 1.09002 * 113.61514 * 89.12055 * 28 17 16 42 42 H 1.08996 * 113.61465 * 219.93703 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0017 11 6 5.5730 -3.2326 -0.0008 12 8 6.3441 -2.2964 0.0005 13 7 6.0457 -4.4947 -0.0014 14 6 7.4907 -4.7358 -0.0010 15 1 8.0596 -3.8987 -0.4057 16 6 8.0281 -5.2560 1.3426 17 6 7.7380 -6.6731 0.8204 18 1 6.7308 -7.0247 1.0442 19 7 8.7751 -7.6529 1.1702 20 6 8.2980 -8.5767 2.2080 21 6 9.3862 -9.5651 2.5395 22 6 9.4769 -10.7618 1.8537 23 7 10.4289 -11.6302 2.1334 24 6 11.3209 -11.4019 3.0774 25 6 11.2902 -10.2281 3.8105 26 9 12.2065 -10.0003 4.7767 27 6 10.3047 -9.2878 3.5396 28 6 7.8884 -6.0965 -0.5972 29 1 -0.4850 0.8400 -0.0004 30 1 3.6440 -3.4306 -0.8923 31 1 3.6434 -3.4325 0.8877 32 1 5.4291 -5.2435 -0.0028 33 1 7.4148 -4.9717 2.1977 34 1 9.0885 -5.0558 1.4958 35 1 9.6251 -7.1922 1.4592 36 1 8.0338 -8.0129 3.1027 37 1 7.4209 -9.1113 1.8432 38 1 8.7616 -10.9867 1.0764 39 1 12.0836 -12.1389 3.2809 40 1 10.2550 -8.3630 4.0951 41 1 8.9107 -6.1259 -0.9744 42 1 7.1633 -6.4917 -1.3085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317070597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:40 Heat of formation + Delta-G solvation = -24.304912 kcal Electronic energy + Delta-G solvation = -24843.963654 eV Core-core repulsion = 20865.292495 eV Total energy + Delta-G solvation = -3978.671160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.51018 -40.77834 -40.25746 -38.43764 -35.76058 -33.38772 -32.46923 -32.29257 -31.22609 -29.19769 -26.52950 -26.00767 -25.64427 -24.32269 -23.54356 -22.46745 -21.00990 -19.70603 -17.95693 -17.89976 -17.88840 -17.37817 -16.77908 -16.37181 -16.17858 -15.82705 -15.66889 -15.12706 -14.99706 -14.67529 -14.30399 -14.06851 -13.94016 -13.79143 -13.67633 -13.42985 -13.17561 -12.97885 -12.82862 -12.75757 -12.43176 -12.08306 -11.93578 -11.29557 -11.07438 -11.02947 -10.77213 -10.62524 -10.37304 -10.17531 -9.88830 -9.59662 -9.48374 -9.10222 -9.02445 -8.84714 -8.53930 -6.95484 -6.31788 -4.03935 0.31288 0.47153 2.70483 2.87799 2.99079 3.24890 3.31293 3.39209 3.47916 3.60027 3.70801 3.86848 4.03940 4.12082 4.22129 4.30283 4.30412 4.33623 4.49683 4.58876 4.65199 4.71271 4.84283 5.07156 5.07329 5.19297 5.21670 5.23389 5.33055 5.38180 5.46771 5.54985 5.67183 5.68879 5.72248 5.85246 5.96503 6.02667 6.40884 6.59709 6.79382 7.24328 7.53949 7.91164 8.38496 8.42516 9.14334 10.77382 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.001563 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.581177 B =17913.771749 C =18010.998165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.236 1.236 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.720 5.720 14 C 0.125 3.875 15 H 0.105 0.895 16 C -0.181 4.181 17 C 0.066 3.934 18 H 0.099 0.901 19 N -0.673 5.673 20 C 0.099 3.901 21 C -0.104 4.104 22 C 0.111 3.889 23 N -0.457 5.457 24 C 0.073 3.927 25 C 0.048 3.952 26 F -0.130 7.130 27 C -0.105 4.105 28 C -0.132 4.132 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.399 0.601 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.345 0.655 36 H 0.048 0.952 37 H 0.091 0.909 38 H 0.166 0.834 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.097 0.903 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.162 -23.362 5.447 31.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.160 1.160 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.373 5.373 14 C 0.018 3.982 15 H 0.123 0.877 16 C -0.222 4.222 17 C -0.044 4.044 18 H 0.117 0.883 19 N -0.303 5.303 20 C -0.031 4.031 21 C -0.106 4.106 22 C -0.047 4.047 23 N -0.164 5.164 24 C -0.086 4.086 25 C 0.027 3.973 26 F -0.109 7.109 27 C -0.132 4.132 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.234 0.766 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.164 0.836 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.183 0.817 39 H 0.184 0.816 40 H 0.164 0.836 41 H 0.116 0.884 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 22.184 -22.893 4.493 32.194 hybrid contribution -0.924 0.729 1.526 1.928 sum 21.260 -22.164 6.019 31.297 Atomic orbital electron populations 1.69936 1.05912 1.27792 1.47975 1.24713 0.94449 0.98962 0.93146 0.86736 0.81873 0.83286 0.79960 1.19177 1.19917 1.15957 1.22314 0.88247 0.97551 1.58906 0.89375 1.84802 1.09320 0.99940 1.97430 1.23283 0.93881 1.04510 1.05846 1.20318 0.90595 0.82278 0.74871 1.90701 1.58749 1.42180 1.47504 1.45673 1.06393 1.08050 1.77200 1.21609 0.82261 0.98208 0.96133 0.87742 1.24164 1.01982 0.96964 0.99052 1.23168 0.95401 0.89126 0.96745 0.88252 1.60513 1.06781 1.20800 1.42203 1.20898 0.94997 0.92835 0.94342 1.20757 0.97258 0.97076 0.95534 1.22834 0.95349 0.89062 0.97437 1.67802 1.02617 1.31839 1.14175 1.22967 0.98334 0.95029 0.92241 1.18807 0.90538 0.97065 0.90914 1.91542 1.64165 1.94731 1.60418 1.21627 0.93722 0.99701 0.98179 1.23443 1.03096 0.94149 0.96435 0.91917 0.88400 0.88469 0.76640 0.90846 0.89156 0.83577 0.93400 0.89047 0.81672 0.81580 0.83645 0.88416 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.28 13.97 55.49 0.78 -25.50 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.56 27.74 -169.99 -4.72 16.85 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 8 H 0.09 2.61 8.03 -52.48 -0.42 2.18 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 11 C 0.53 8.96 7.85 -10.99 -0.09 8.88 16 12 O -0.52 -10.77 15.46 5.55 0.09 -10.69 16 13 N -0.72 -8.24 5.26 -53.02 -0.28 -8.52 16 14 C 0.12 1.23 4.32 -67.12 -0.29 0.94 16 15 H 0.10 1.26 7.46 -51.93 -0.39 0.87 16 16 C -0.18 -1.42 7.49 -25.92 -0.19 -1.61 16 17 C 0.07 0.40 4.06 -66.90 -0.27 0.13 16 18 H 0.10 0.57 7.87 -51.93 -0.41 0.16 16 19 N -0.67 -3.67 6.61 -107.13 -0.71 -4.38 16 20 C 0.10 0.46 5.68 -4.97 -0.03 0.43 16 21 C -0.10 -0.57 5.41 -104.50 -0.57 -1.14 16 22 C 0.11 0.70 10.86 -17.55 -0.19 0.51 16 23 N -0.46 -3.55 10.36 -13.19 -0.14 -3.69 16 24 C 0.07 0.48 11.17 -17.47 -0.20 0.29 16 25 C 0.05 0.32 7.35 -39.27 -0.29 0.04 16 26 F -0.13 -0.97 17.28 2.25 0.04 -0.93 16 27 C -0.11 -0.61 9.85 -39.21 -0.39 -0.99 16 28 C -0.13 -0.93 7.63 -25.92 -0.20 -1.13 16 29 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 30 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 32 H 0.40 3.44 8.70 -40.82 -0.36 3.08 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.63 7.82 -51.93 -0.41 0.22 16 35 H 0.35 1.81 8.19 -39.29 -0.32 1.49 16 36 H 0.05 0.22 8.10 -51.93 -0.42 -0.20 16 37 H 0.09 0.37 8.08 -51.93 -0.42 -0.05 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -34.22 376.99 -9.19 -43.41 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.68 Total: 0.90 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -2.26 Total: -7.61 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: -0.35 Total: -42.09 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.69 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 0.04 Total: -0.93 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.72 Total: 16.85 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.22 -9.19 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317070597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.106 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds