Wall clock time and date at job start Tue Mar 31 2020 22:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86807 * 120.00281 * 2 1 4 4 H 1.48503 * 109.46999 * 270.00074 * 3 2 1 5 5 H 1.48499 * 109.46709 * 29.99994 * 3 2 1 6 6 H 1.48496 * 109.47444 * 149.99838 * 3 2 1 7 7 C 1.38803 * 120.00335 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99434 * 359.97438 * 7 2 1 9 9 S 1.76195 * 120.00358 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99889 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47138 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00248 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00158 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00037 * 179.97438 * 13 11 10 15 15 H 1.08998 * 112.85225 * 336.19984 * 14 13 11 16 16 C 1.53782 * 113.61243 * 107.50505 * 14 13 11 17 17 C 1.53784 * 87.08299 * 89.11748 * 16 14 13 18 18 H 1.09000 * 113.68886 * 270.87246 * 17 16 14 19 19 N 1.46898 * 113.61583 * 139.97941 * 17 16 14 20 20 C 1.46906 * 110.99888 * 107.50509 * 19 17 16 21 21 C 1.50699 * 109.47140 * 179.97438 * 20 19 17 22 22 C 1.38229 * 120.40333 * 269.72396 * 21 20 19 23 23 N 1.31854 * 120.81939 * 179.72765 * 22 21 20 24 24 C 1.31868 * 121.74820 * 0.53738 * 23 22 21 25 25 C 1.38430 * 120.72813 * 359.74847 * 24 23 22 26 26 F 1.35095 * 120.44490 * 179.97438 * 25 24 23 27 27 C 1.38588 * 120.40420 * 89.99988 * 21 20 19 28 28 C 1.53781 * 87.08004 * 25.43279 * 17 16 14 29 29 H 0.96996 * 119.99848 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47499 * 59.99776 * 10 9 7 31 31 H 1.09002 * 109.47001 * 299.99385 * 10 9 7 32 32 H 0.96993 * 120.00262 * 0.02562 * 13 11 10 33 33 H 1.09000 * 113.61581 * 334.56641 * 16 14 13 34 34 H 1.09000 * 113.61639 * 203.66367 * 16 14 13 35 35 H 1.00901 * 111.00121 * 343.55095 * 19 17 16 36 36 H 1.09004 * 109.47040 * 299.99934 * 20 19 17 37 37 H 1.09000 * 109.47033 * 59.99886 * 20 19 17 38 38 H 1.08002 * 119.59359 * 359.97438 * 22 21 20 39 39 H 1.07998 * 119.63633 * 179.73370 * 24 23 22 40 40 H 1.07999 * 120.80153 * 0.02562 * 27 21 20 41 41 H 1.09002 * 113.61514 * 89.12055 * 28 17 16 42 42 H 1.08996 * 113.61465 * 219.93703 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9845 -0.0017 11 6 5.5730 -3.2326 -0.0008 12 8 6.3441 -2.2964 0.0005 13 7 6.0457 -4.4947 -0.0014 14 6 7.4907 -4.7358 -0.0010 15 1 8.0596 -3.8987 -0.4057 16 6 8.0281 -5.2560 1.3426 17 6 7.7380 -6.6731 0.8204 18 1 6.7308 -7.0247 1.0442 19 7 8.7751 -7.6529 1.1702 20 6 8.2980 -8.5767 2.2080 21 6 9.3862 -9.5651 2.5395 22 6 9.4769 -10.7618 1.8537 23 7 10.4289 -11.6302 2.1334 24 6 11.3209 -11.4019 3.0774 25 6 11.2902 -10.2281 3.8105 26 9 12.2065 -10.0003 4.7767 27 6 10.3047 -9.2878 3.5396 28 6 7.8884 -6.0965 -0.5972 29 1 -0.4850 0.8400 -0.0004 30 1 3.6440 -3.4306 -0.8923 31 1 3.6434 -3.4325 0.8877 32 1 5.4291 -5.2435 -0.0028 33 1 7.4148 -4.9717 2.1977 34 1 9.0885 -5.0558 1.4958 35 1 9.6251 -7.1922 1.4592 36 1 8.0338 -8.0129 3.1027 37 1 7.4209 -9.1113 1.8432 38 1 8.7616 -10.9867 1.0764 39 1 12.0836 -12.1389 3.2809 40 1 10.2550 -8.3630 4.0951 41 1 8.9107 -6.1259 -0.9744 42 1 7.1633 -6.4917 -1.3085 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317070597.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:39 Heat of formation + Delta-G solvation = -49.035516 kcal Electronic energy + Delta-G solvation = -24845.036054 eV Core-core repulsion = 20865.292495 eV Total energy + Delta-G solvation = -3979.743559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.03056 -41.35993 -41.05185 -39.48031 -36.34553 -34.67554 -34.31427 -32.89283 -31.79916 -30.51336 -27.86409 -27.00787 -26.61722 -24.79829 -24.20601 -22.89876 -22.17437 -20.49481 -19.87904 -18.40449 -18.37074 -18.04197 -17.81111 -17.21359 -17.00131 -16.89310 -16.57968 -16.42276 -16.30368 -15.68211 -15.16258 -15.00375 -14.80809 -14.71373 -14.48384 -14.37355 -14.11563 -13.92602 -13.67508 -13.36449 -13.34443 -13.29095 -13.01301 -12.96605 -12.66022 -12.39625 -11.86612 -11.75161 -11.37417 -11.17173 -11.01244 -10.85323 -10.65170 -10.53329 -10.09024 -9.94253 -9.32366 -8.99559 -8.51570 -6.22312 -0.13986 0.02089 0.99118 1.31383 1.46695 1.54972 1.55839 2.21008 2.25940 2.53052 2.71893 2.86816 2.94288 3.25039 3.44479 3.55372 3.63562 3.72288 3.75703 3.85139 3.88844 3.97788 4.06355 4.16073 4.24910 4.44315 4.47366 4.63623 4.73563 4.79808 4.81894 4.82597 4.90365 4.95519 5.07600 5.10668 5.16242 5.56162 5.59596 5.70696 6.04427 6.11527 6.37816 6.48586 6.78553 6.93822 7.21160 8.60681 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.001563 C = 0.001554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.581177 B =17913.771749 C =18010.998165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.046 3.954 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.537 3.463 12 O -0.564 6.564 13 N -0.694 5.694 14 C 0.108 3.892 15 H 0.079 0.921 16 C -0.175 4.175 17 C 0.081 3.919 18 H 0.111 0.889 19 N -0.674 5.674 20 C 0.102 3.898 21 C -0.100 4.100 22 C 0.105 3.895 23 N -0.482 5.482 24 C 0.066 3.934 25 C 0.035 3.965 26 F -0.137 7.137 27 C -0.105 4.105 28 C -0.119 4.119 29 H 0.277 0.723 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.417 0.583 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.348 0.652 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.181 0.819 39 H 0.181 0.819 40 H 0.160 0.840 41 H 0.103 0.897 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.141 -24.569 5.532 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.677 4.677 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.262 4.262 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.347 5.347 14 C 0.002 3.998 15 H 0.098 0.902 16 C -0.215 4.215 17 C -0.030 4.030 18 H 0.129 0.871 19 N -0.304 5.304 20 C -0.027 4.027 21 C -0.102 4.102 22 C -0.052 4.052 23 N -0.189 5.189 24 C -0.092 4.092 25 C 0.014 3.986 26 F -0.116 7.116 27 C -0.132 4.132 28 C -0.158 4.158 29 H 0.086 0.914 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.254 0.746 33 H 0.080 0.920 34 H 0.117 0.883 35 H 0.167 0.833 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.198 0.802 39 H 0.198 0.802 40 H 0.177 0.823 41 H 0.122 0.878 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 23.167 -24.168 4.583 33.790 hybrid contribution -1.180 0.922 1.492 2.114 sum 21.987 -23.246 6.075 32.568 Atomic orbital electron populations 1.70013 1.07279 1.28999 1.49132 1.25552 0.95254 1.02209 0.92908 0.85877 0.80669 0.79688 0.80194 1.18735 1.18383 1.16115 1.22467 0.90260 0.96709 1.58247 0.91856 1.84739 1.06424 1.06362 1.97592 1.23275 0.95865 0.99524 1.07561 1.19967 0.89325 0.83459 0.74927 1.90692 1.59323 1.43923 1.50231 1.45405 1.07765 1.06656 1.74838 1.21819 0.80586 0.98952 0.98423 0.90230 1.24150 1.02207 0.97987 0.97204 1.23044 0.96130 0.88253 0.95523 0.87144 1.60484 1.06660 1.20539 1.42682 1.20921 0.94873 0.92516 0.94405 1.20806 0.97283 0.96981 0.95168 1.23156 0.95230 0.89150 0.97710 1.67823 1.03443 1.32735 1.14927 1.23212 0.98523 0.95451 0.92008 1.18934 0.90959 0.97596 0.91156 1.91520 1.64533 1.94806 1.60761 1.21843 0.93238 0.99946 0.98147 1.23375 1.03518 0.91744 0.97159 0.91386 0.86725 0.86715 0.74555 0.91981 0.88263 0.83304 0.92797 0.87976 0.80242 0.80230 0.82268 0.87814 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.24 13.97 21.65 0.30 -54.93 16 2 C 0.05 2.69 5.50 84.86 0.47 3.15 16 3 Si 0.91 44.58 27.74 68.60 1.90 46.48 16 4 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 6 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 7 C -0.53 -30.37 10.04 67.96 0.68 -29.68 16 8 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 9 S -0.18 -8.81 18.55 -56.49 -1.05 -9.85 16 10 C -0.11 -3.99 6.16 71.24 0.44 -3.55 16 11 C 0.54 17.38 7.85 87.66 0.69 18.07 16 12 O -0.56 -23.32 15.46 -3.04 -0.05 -23.37 16 13 N -0.69 -14.37 5.26 -440.03 -2.32 -16.68 16 14 C 0.11 1.93 4.32 45.52 0.20 2.13 16 15 H 0.08 1.87 7.46 -2.39 -0.02 1.86 16 16 C -0.18 -2.34 7.49 31.12 0.23 -2.11 16 17 C 0.08 0.72 4.06 45.44 0.18 0.91 16 18 H 0.11 0.81 7.87 -2.39 -0.02 0.79 16 19 N -0.67 -5.19 6.61 -492.84 -3.26 -8.45 16 20 C 0.10 0.63 5.68 85.56 0.49 1.12 16 21 C -0.10 -0.88 5.41 -19.78 -0.11 -0.99 16 22 C 0.11 1.14 10.86 84.69 0.92 2.06 16 23 N -0.48 -6.97 10.36 -195.66 -2.03 -8.99 16 24 C 0.07 0.83 11.17 84.73 0.95 1.77 16 25 C 0.03 0.44 7.35 22.47 0.17 0.60 16 26 F -0.14 -1.97 17.28 44.97 0.78 -1.20 16 27 C -0.10 -1.03 9.85 22.51 0.22 -0.80 16 28 C -0.12 -1.33 7.63 31.12 0.24 -1.09 16 29 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 31 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.42 5.83 8.70 -92.71 -0.81 5.02 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.17 7.82 -2.39 -0.02 1.15 16 35 H 0.35 2.61 8.19 -89.69 -0.73 1.87 16 36 H 0.05 0.31 8.10 -2.38 -0.02 0.29 16 37 H 0.10 0.46 8.08 -2.39 -0.02 0.44 16 38 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -74.88 376.99 -0.46 -75.34 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -0.51 Total: 10.06 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 5.76 Total: -8.41 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -7.30 Total: -89.06 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.37 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.78 Total: -1.20 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.05 Total: -9.85 kcal Total: -74.88 -0.46 -75.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317070597.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.304 kcal (2) G-P(sol) polarization free energy of solvation -74.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds