Wall clock time and date at job start Tue Mar 31 2020 22:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99962 * 2 1 4 4 H 1.48493 * 109.46816 * 240.00113 * 3 2 1 5 5 H 1.48496 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46738 * 119.99907 * 3 2 1 7 7 C 1.38952 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99404 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00362 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99883 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47033 * 180.02562 * 12 10 9 14 14 C 1.47441 * 111.00003 * 55.56368 * 13 12 10 15 15 C 1.54310 * 107.23650 * 123.25616 * 14 13 12 16 16 C 1.55260 * 103.08534 * 22.20311 * 15 14 13 17 17 C 1.47846 * 110.99602 * 176.40372 * 13 12 10 18 18 H 1.09002 * 110.37562 * 332.57332 * 17 13 12 19 19 C 1.53001 * 110.37350 * 94.80919 * 17 13 12 20 20 N 1.46502 * 109.46730 * 298.45313 * 19 17 13 21 21 C 1.34778 * 119.99629 * 173.46214 * 20 19 17 22 22 O 1.21569 * 120.00322 * 359.97438 * 21 20 19 23 23 C 1.47750 * 119.99920 * 179.97438 * 21 20 19 24 24 C 1.39353 * 124.11706 * 179.97438 * 23 21 20 25 25 N 1.30094 * 112.14550 * 180.02562 * 24 23 21 26 26 S 1.55921 * 108.75471 * 359.97438 * 25 24 23 27 27 N 1.31488 * 124.11502 * 359.97438 * 23 21 20 28 28 H 0.97002 * 120.00339 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99732 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.46896 * 60.00359 * 12 10 9 31 31 H 1.09004 * 109.47089 * 300.00570 * 12 10 9 32 32 H 1.09001 * 109.88958 * 242.66709 * 14 13 12 33 33 H 1.09006 * 109.88945 * 3.68597 * 14 13 12 34 34 H 1.09004 * 110.71027 * 140.66467 * 15 14 13 35 35 H 1.09006 * 110.70602 * 263.72530 * 15 14 13 36 36 H 1.09003 * 111.09235 * 206.38780 * 16 15 14 37 37 H 1.08998 * 110.94504 * 82.53149 * 16 15 14 38 38 H 1.08999 * 109.47238 * 178.45067 * 19 17 13 39 39 H 1.09002 * 109.47138 * 58.45225 * 19 17 13 40 40 H 0.96991 * 119.99988 * 353.45270 * 20 19 17 41 41 H 1.08002 * 123.92716 * 0.26470 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 3.1333 -5.8748 1.1379 15 6 3.0165 -7.1826 1.9486 16 6 2.4402 -8.1870 0.9144 17 6 1.4955 -7.2773 0.0898 18 1 0.5408 -7.1582 0.6021 19 6 1.2798 -7.8612 -1.3078 20 7 0.4423 -6.9512 -2.0932 21 6 0.2268 -7.1937 -3.4013 22 8 0.7278 -8.1672 -3.9297 23 6 -0.6183 -6.2763 -4.1933 24 6 -0.8970 -6.4439 -5.5483 25 7 -1.6639 -5.5007 -6.0117 26 16 -1.9954 -4.5102 -4.8540 27 7 -1.1991 -5.2023 -3.7053 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6168 -4.9208 -0.8875 31 1 0.6173 -4.9204 0.8924 32 1 4.1523 -5.7567 0.7694 33 1 2.8642 -5.0231 1.7627 34 1 3.9963 -7.5081 2.2983 35 1 2.3319 -7.0562 2.7874 36 1 1.8827 -8.9825 1.4088 37 1 3.2316 -8.5981 0.2877 38 1 0.7859 -8.8293 -1.2249 39 1 2.2433 -7.9860 -1.8021 40 1 0.0428 -6.1744 -1.6717 41 1 -0.5231 -7.2638 -6.1437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317499739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:15 Heat of formation + Delta-G solvation = 3.462691 kcal Electronic energy + Delta-G solvation = -27271.263561 eV Core-core repulsion = 23313.716456 eV Total energy + Delta-G solvation = -3957.547104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.21977 -39.78899 -38.79548 -37.57434 -34.82019 -33.98963 -33.62440 -31.97359 -31.18889 -30.11790 -27.63586 -26.77772 -25.24385 -24.17451 -22.76447 -21.38624 -20.43136 -20.13194 -19.49471 -19.15715 -17.92843 -17.80372 -16.53901 -16.13120 -15.96948 -15.72588 -15.42722 -15.06730 -14.82657 -14.54905 -14.20561 -13.94840 -13.85447 -13.57581 -12.95568 -12.51212 -12.37231 -12.18186 -12.12911 -11.74484 -11.57437 -11.49578 -11.32455 -11.30757 -11.17940 -11.16373 -11.00408 -10.89136 -10.56328 -10.46618 -10.24595 -10.17311 -9.51358 -9.39703 -9.07657 -8.41438 -8.01297 -7.98216 -6.44917 -3.85676 0.30890 1.27053 1.41093 1.49039 2.96173 3.07452 3.17400 3.23419 3.27675 3.83749 3.93466 4.18440 4.32444 4.55033 4.65456 4.71440 4.97515 4.98092 5.06639 5.15775 5.21892 5.26573 5.30345 5.49561 5.53942 5.65315 5.78349 5.79325 5.83543 5.95332 6.07593 6.20843 6.24222 6.28675 6.36375 6.57405 7.22266 7.23892 7.36952 7.51821 8.00374 8.02037 8.57521 9.14363 9.49945 10.01383 10.72562 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.004503 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3763.818122 B = 6215.916317 C = 9536.573437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.561 5.561 10 C 0.442 3.558 11 O -0.577 6.577 12 C 0.039 3.961 13 N -0.502 5.502 14 C 0.063 3.937 15 C -0.147 4.147 16 C -0.116 4.116 17 C 0.053 3.947 18 H 0.061 0.939 19 C 0.136 3.864 20 N -0.701 5.701 21 C 0.606 3.394 22 O -0.530 6.530 23 C 0.008 3.992 24 C 0.088 3.912 25 N -0.583 5.583 26 S 0.733 5.267 27 N -0.542 5.542 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.408 0.592 41 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 -14.461 -3.126 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.198 5.198 10 C 0.227 3.773 11 O -0.461 6.461 12 C -0.093 4.093 13 N -0.227 5.227 14 C -0.064 4.064 15 C -0.186 4.186 16 C -0.155 4.155 17 C -0.056 4.056 18 H 0.078 0.922 19 C 0.012 3.988 20 N -0.354 5.354 21 C 0.386 3.614 22 O -0.406 6.406 23 C -0.167 4.167 24 C -0.106 4.106 25 N -0.424 5.424 26 S 0.775 5.225 27 N -0.393 5.393 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.248 0.752 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -5.664 -13.194 -3.969 14.897 hybrid contribution 0.073 -0.091 0.877 0.885 sum -5.591 -13.285 -3.092 14.742 Atomic orbital electron populations 1.69600 1.05901 1.28272 1.50404 1.25245 0.95623 0.99657 0.97252 0.85936 0.78800 0.80516 0.79087 1.19910 1.20938 1.19915 1.19637 0.93310 0.82181 1.47759 0.88004 1.41834 1.09152 1.04549 1.64254 1.19628 0.88412 0.84503 0.84783 1.90535 1.13533 1.86842 1.55208 1.22195 0.94505 0.91859 1.00771 1.63268 1.15811 0.99503 1.44103 1.22675 0.98299 0.95447 0.89971 1.22932 1.01418 0.96249 0.97959 1.22641 0.98648 0.97053 0.97127 1.22904 0.97190 0.90976 0.94551 0.92151 1.21499 0.95488 0.91601 0.90172 1.46000 1.50668 1.29687 1.09070 1.16710 0.79611 0.83368 0.81730 1.90811 1.50486 1.28483 1.70797 1.22517 1.04099 0.95565 0.94495 1.23733 0.95561 0.98651 0.92638 1.72247 1.21134 1.11422 1.37616 1.79248 1.34707 1.25661 0.82891 1.72446 1.15720 1.12538 1.38555 0.91804 0.77514 0.89905 0.93315 0.89832 0.92098 0.90742 0.91809 0.90716 0.90132 0.91009 0.89831 0.75228 0.77055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.94 13.05 55.50 0.72 -23.22 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 9 N -0.56 -13.94 5.29 -10.96 -0.06 -13.99 16 10 C 0.44 10.19 7.10 -10.99 -0.08 10.11 16 11 O -0.58 -15.16 13.97 5.55 0.08 -15.09 16 12 C 0.04 0.67 5.03 -4.97 -0.03 0.64 16 13 N -0.50 -7.97 4.70 -224.81 -1.06 -9.02 16 14 C 0.06 1.01 5.14 -2.84 -0.01 0.99 16 15 C -0.15 -1.68 6.94 -24.85 -0.17 -1.85 16 16 C -0.12 -1.16 6.51 -24.53 -0.16 -1.32 16 17 C 0.05 0.63 2.68 -66.18 -0.18 0.45 16 18 H 0.06 0.67 7.72 -51.93 -0.40 0.27 16 19 C 0.14 1.62 5.39 -4.04 -0.02 1.60 16 20 N -0.70 -9.30 5.34 -61.28 -0.33 -9.63 16 21 C 0.61 8.57 7.82 -12.37 -0.10 8.47 16 22 O -0.53 -8.33 16.79 5.31 0.09 -8.24 16 23 C 0.01 0.11 6.81 -83.71 -0.57 -0.46 16 24 C 0.09 1.01 11.22 -17.87 -0.20 0.81 16 25 N -0.58 -6.82 11.41 19.43 0.22 -6.60 16 26 S 0.73 7.85 23.69 -107.50 -2.55 5.30 16 27 N -0.54 -7.13 11.00 23.18 0.26 -6.88 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 9.32 7.90 -40.82 -0.32 9.00 16 30 H 0.08 1.36 5.35 -51.93 -0.28 1.08 16 31 H 0.05 0.77 8.00 -51.93 -0.42 0.35 16 32 H 0.08 1.48 8.00 -51.93 -0.42 1.07 16 33 H 0.06 1.11 6.61 -51.93 -0.34 0.77 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 40 H 0.41 5.48 5.07 -40.82 -0.21 5.27 16 41 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -32.33 356.85 -8.87 -41.20 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -4.85 Total: 13.38 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: -1.76 Total: 11.65 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -0.24 Total: -69.34 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.17 Total: -23.33 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 7.85 SS G_CDS: -2.55 Total: 5.30 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.33 -8.87 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317499739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.660 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds