Wall clock time and date at job start Tue Mar 31 2020 22:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99962 * 2 1 4 4 H 1.48493 * 109.46816 * 240.00113 * 3 2 1 5 5 H 1.48496 * 109.46993 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46738 * 119.99907 * 3 2 1 7 7 C 1.38952 * 119.99783 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99404 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99974 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00362 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99883 * 180.02562 * 10 9 7 13 13 N 1.46905 * 109.47033 * 180.02562 * 12 10 9 14 14 C 1.47441 * 111.00003 * 55.56368 * 13 12 10 15 15 C 1.54310 * 107.23650 * 123.25616 * 14 13 12 16 16 C 1.55260 * 103.08534 * 22.20311 * 15 14 13 17 17 C 1.47846 * 110.99602 * 176.40372 * 13 12 10 18 18 H 1.09002 * 110.37562 * 332.57332 * 17 13 12 19 19 C 1.53001 * 110.37350 * 94.80919 * 17 13 12 20 20 N 1.46502 * 109.46730 * 298.45313 * 19 17 13 21 21 C 1.34778 * 119.99629 * 173.46214 * 20 19 17 22 22 O 1.21569 * 120.00322 * 359.97438 * 21 20 19 23 23 C 1.47750 * 119.99920 * 179.97438 * 21 20 19 24 24 C 1.39353 * 124.11706 * 179.97438 * 23 21 20 25 25 N 1.30094 * 112.14550 * 180.02562 * 24 23 21 26 26 S 1.55921 * 108.75471 * 359.97438 * 25 24 23 27 27 N 1.31488 * 124.11502 * 359.97438 * 23 21 20 28 28 H 0.97002 * 120.00339 * 359.97438 * 1 2 3 29 29 H 0.96996 * 119.99732 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.46896 * 60.00359 * 12 10 9 31 31 H 1.09004 * 109.47089 * 300.00570 * 12 10 9 32 32 H 1.09001 * 109.88958 * 242.66709 * 14 13 12 33 33 H 1.09006 * 109.88945 * 3.68597 * 14 13 12 34 34 H 1.09004 * 110.71027 * 140.66467 * 15 14 13 35 35 H 1.09006 * 110.70602 * 263.72530 * 15 14 13 36 36 H 1.09003 * 111.09235 * 206.38780 * 16 15 14 37 37 H 1.08998 * 110.94504 * 82.53149 * 16 15 14 38 38 H 1.08999 * 109.47238 * 178.45067 * 19 17 13 39 39 H 1.09002 * 109.47138 * 58.45225 * 19 17 13 40 40 H 0.96991 * 119.99988 * 353.45270 * 20 19 17 41 41 H 1.08002 * 123.92716 * 0.26470 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0001 9 7 1.3234 -2.3907 0.0016 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0011 12 6 1.2437 -4.8629 0.0022 13 7 2.1983 -5.9795 0.0027 14 6 3.1333 -5.8748 1.1379 15 6 3.0165 -7.1826 1.9486 16 6 2.4402 -8.1870 0.9144 17 6 1.4955 -7.2773 0.0898 18 1 0.5408 -7.1582 0.6021 19 6 1.2798 -7.8612 -1.3078 20 7 0.4423 -6.9512 -2.0932 21 6 0.2268 -7.1937 -3.4013 22 8 0.7278 -8.1672 -3.9297 23 6 -0.6183 -6.2763 -4.1933 24 6 -0.8970 -6.4439 -5.5483 25 7 -1.6639 -5.5007 -6.0117 26 16 -1.9954 -4.5102 -4.8540 27 7 -1.1991 -5.2023 -3.7053 28 1 -0.4851 0.8400 0.0004 29 1 0.3534 -2.3906 0.0016 30 1 0.6168 -4.9208 -0.8875 31 1 0.6173 -4.9204 0.8924 32 1 4.1523 -5.7567 0.7694 33 1 2.8642 -5.0231 1.7627 34 1 3.9963 -7.5081 2.2983 35 1 2.3319 -7.0562 2.7874 36 1 1.8827 -8.9825 1.4088 37 1 3.2316 -8.5981 0.2877 38 1 0.7859 -8.8293 -1.2249 39 1 2.2433 -7.9860 -1.8021 40 1 0.0428 -6.1744 -1.6717 41 1 -0.5231 -7.2638 -6.1437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317499739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:14 Heat of formation + Delta-G solvation = -23.016252 kcal Electronic energy + Delta-G solvation = -27272.411774 eV Core-core repulsion = 23313.716456 eV Total energy + Delta-G solvation = -3958.695318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.18238 -41.03493 -40.04363 -39.11959 -36.06420 -35.77279 -34.58509 -33.45343 -32.95771 -31.15811 -28.61477 -28.31980 -26.46679 -25.76571 -23.78766 -22.43549 -21.54785 -21.17773 -20.88188 -20.40438 -19.85814 -18.86483 -17.77197 -17.43382 -17.11598 -16.90602 -16.58497 -16.48400 -16.13954 -15.95498 -15.60146 -15.55794 -15.05032 -14.76266 -14.45196 -13.83981 -13.55641 -13.50007 -13.28748 -13.15760 -12.96151 -12.85897 -12.54304 -12.43923 -12.28431 -12.25472 -12.19307 -12.13909 -12.10537 -11.97478 -11.55831 -11.45820 -11.22274 -10.36656 -10.27393 -10.04460 -10.00831 -9.26482 -8.46836 -5.95313 -0.64758 0.35827 0.46103 0.61088 1.38042 1.40731 1.50972 1.92972 2.01738 2.08156 2.27334 2.75196 3.19042 3.24529 3.39009 3.65058 3.71905 3.78023 4.01609 4.05636 4.14080 4.24420 4.28370 4.40732 4.46148 4.47115 4.62518 4.67622 4.81444 4.95538 5.03119 5.13000 5.21747 5.27122 5.37206 5.40231 5.40928 5.87633 6.02003 6.13175 6.31293 6.59302 6.94869 7.11999 7.54046 8.09789 8.70166 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007437 B = 0.004503 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3763.818122 B = 6215.916317 C = 9536.573437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.570 5.570 10 C 0.438 3.562 11 O -0.614 6.614 12 C 0.054 3.946 13 N -0.521 5.521 14 C 0.064 3.936 15 C -0.136 4.136 16 C -0.106 4.106 17 C 0.054 3.946 18 H 0.079 0.921 19 C 0.137 3.863 20 N -0.701 5.701 21 C 0.603 3.397 22 O -0.551 6.551 23 C -0.008 4.008 24 C 0.090 3.910 25 N -0.595 5.595 26 S 0.781 5.219 27 N -0.568 5.568 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.067 0.933 40 H 0.407 0.593 41 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.982 -15.463 -2.833 17.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.209 4.209 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.095 0.905 9 N -0.207 5.207 10 C 0.225 3.775 11 O -0.500 6.500 12 C -0.077 4.077 13 N -0.247 5.247 14 C -0.064 4.064 15 C -0.175 4.175 16 C -0.144 4.144 17 C -0.054 4.054 18 H 0.096 0.904 19 C 0.014 3.986 20 N -0.353 5.353 21 C 0.384 3.616 22 O -0.429 6.429 23 C -0.181 4.181 24 C -0.102 4.102 25 N -0.437 5.437 26 S 0.823 5.177 27 N -0.420 5.420 28 H 0.088 0.912 29 H 0.229 0.771 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.246 0.754 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.859 -14.220 -3.669 16.209 hybrid contribution 0.426 0.247 0.761 0.907 sum -6.433 -13.973 -2.908 15.655 Atomic orbital electron populations 1.69654 1.06672 1.29350 1.50017 1.25966 0.96519 1.02142 0.96238 0.85050 0.77850 0.76974 0.78832 1.20004 1.19303 1.19771 1.19575 0.92576 0.83973 1.50161 0.90540 1.41885 1.09230 1.04628 1.65003 1.20647 0.88336 0.85915 0.82579 1.90509 1.15525 1.87725 1.56246 1.22013 0.94170 0.89230 1.02312 1.63197 1.16237 1.00701 1.44538 1.22521 0.96724 0.97016 0.90090 1.22859 1.02745 0.93875 0.97970 1.22671 0.98479 0.96943 0.96328 1.23037 0.98094 0.89146 0.95095 0.90359 1.21592 0.94871 0.92449 0.89713 1.46063 1.50494 1.29728 1.09029 1.16863 0.79496 0.83276 0.81945 1.90791 1.51488 1.29411 1.71190 1.22468 1.04815 0.95806 0.95048 1.23943 0.95111 0.98933 0.92246 1.72229 1.21502 1.11831 1.38135 1.79037 1.32875 1.24234 0.81604 1.72316 1.16521 1.13006 1.40120 0.91233 0.77071 0.88671 0.91129 0.92847 0.95244 0.89474 0.90559 0.87279 0.89955 0.88473 0.91424 0.75385 0.75333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.45 13.05 21.66 0.28 -48.17 16 2 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 3 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 7 C -0.33 -18.80 9.68 84.04 0.81 -17.98 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 10 C 0.44 20.80 7.10 87.66 0.62 21.42 16 11 O -0.61 -33.73 13.97 -3.07 -0.04 -33.77 16 12 C 0.05 1.87 5.03 85.56 0.43 2.30 16 13 N -0.52 -16.29 4.70 -865.16 -4.07 -20.35 16 14 C 0.06 2.07 5.14 86.64 0.45 2.51 16 15 C -0.14 -2.82 6.94 31.81 0.22 -2.60 16 16 C -0.11 -1.77 6.51 32.02 0.21 -1.56 16 17 C 0.05 1.16 2.68 45.39 0.12 1.28 16 18 H 0.08 1.45 7.72 -2.39 -0.02 1.43 16 19 C 0.14 3.00 5.39 86.38 0.47 3.47 16 20 N -0.70 -17.77 5.34 -466.05 -2.49 -20.26 16 21 C 0.60 16.63 7.82 86.76 0.68 17.31 16 22 O -0.55 -16.96 16.79 -3.93 -0.07 -17.02 16 23 C -0.01 -0.20 6.81 41.98 0.29 0.09 16 24 C 0.09 1.98 11.22 85.22 0.96 2.94 16 25 N -0.60 -13.17 11.41 -92.45 -1.05 -14.22 16 26 S 0.78 15.80 23.69 -56.49 -1.34 14.46 16 27 N -0.57 -14.47 11.00 -80.58 -0.89 -15.36 16 28 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 29 H 0.40 19.13 7.90 -92.71 -0.73 18.40 16 30 H 0.10 3.05 5.35 -2.39 -0.01 3.04 16 31 H 0.07 2.13 8.00 -2.38 -0.02 2.11 16 32 H 0.05 1.99 8.00 -2.39 -0.02 1.98 16 33 H 0.03 1.10 6.61 -2.38 -0.02 1.09 16 34 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 35 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 38 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.73 8.11 -2.39 -0.02 1.71 16 40 H 0.41 10.45 5.07 -92.71 -0.47 9.98 16 41 H 0.23 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -71.57 356.85 -3.64 -75.21 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.10 Total: 36.35 kcal Atomic # 6 Polarization: 23.49 SS G_CDS: 5.72 Total: 29.20 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -9.84 Total: -149.04 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -0.11 Total: -50.80 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 15.80 SS G_CDS: -1.34 Total: 14.46 kcal Total: -71.57 -3.64 -75.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317499739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.190 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds