Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48501 * 109.46686 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.46754 * 29.99503 * 3 2 1 6 6 H 1.48495 * 109.47183 * 149.99821 * 3 2 1 7 7 C 1.38963 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99494 * 359.97438 * 7 2 1 9 9 N 1.37089 * 119.99926 * 180.27840 * 7 2 1 10 10 C 1.34774 * 120.00006 * 179.72178 * 9 7 2 11 11 O 1.21295 * 120.00103 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00295 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47136 * 179.97438 * 12 10 9 14 14 C 1.48554 * 111.00197 * 279.71306 * 13 12 10 15 15 C 1.54383 * 104.59218 * 200.96064 * 14 13 12 16 16 C 1.54257 * 105.06392 * 23.84978 * 15 14 13 17 17 C 1.48561 * 110.99769 * 164.29218 * 13 12 10 18 18 H 1.08999 * 110.41091 * 40.26463 * 17 13 12 19 19 C 1.53003 * 110.41185 * 277.93794 * 17 13 12 20 20 N 1.46504 * 109.47166 * 174.67337 * 19 17 13 21 21 C 1.34775 * 120.00063 * 184.89174 * 20 19 17 22 22 O 1.21566 * 119.99885 * 359.97438 * 21 20 19 23 23 C 1.47745 * 120.00088 * 180.02562 * 21 20 19 24 24 C 1.39346 * 124.12125 * 180.02562 * 23 21 20 25 25 N 1.30094 * 112.15013 * 179.97438 * 24 23 21 26 26 S 1.55915 * 108.75122 * 359.97438 * 25 24 23 27 27 N 1.31499 * 124.11538 * 359.69985 * 23 21 20 28 28 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00495 * 359.72302 * 9 7 2 30 30 H 1.08998 * 109.47314 * 300.00208 * 12 10 9 31 31 H 1.08998 * 109.46865 * 60.00478 * 12 10 9 32 32 H 1.08998 * 110.41236 * 319.73799 * 14 13 12 33 33 H 1.09005 * 110.41546 * 82.18324 * 14 13 12 34 34 H 1.09003 * 110.32624 * 264.95458 * 15 14 13 35 35 H 1.09001 * 110.41361 * 142.79631 * 15 14 13 36 36 H 1.08993 * 110.32967 * 241.10611 * 16 15 14 37 37 H 1.09007 * 110.32029 * 118.89456 * 16 15 14 38 38 H 1.08998 * 109.47078 * 294.67947 * 19 17 13 39 39 H 1.09004 * 109.46744 * 54.67479 * 19 17 13 40 40 H 0.97002 * 119.99705 * 4.89791 * 20 19 17 41 41 H 1.08003 * 123.92221 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4454 2.6526 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3705 0.0125 11 8 3.4472 -3.4210 0.0125 12 6 5.5607 -2.3706 0.0183 13 7 6.0503 -3.7556 0.0250 14 6 6.0019 -4.3307 1.3939 15 6 7.0011 -5.5070 1.3571 16 6 7.9787 -5.1670 0.2133 17 6 7.4880 -3.8137 -0.3448 18 1 8.0332 -2.9913 0.1183 19 6 7.6500 -3.7706 -1.8656 20 7 9.0738 -3.7008 -2.2033 21 6 9.4554 -3.5541 -3.4875 22 8 8.6181 -3.4802 -4.3657 23 6 10.8914 -3.4842 -3.8281 24 6 11.3809 -3.3333 -5.1240 25 7 12.6810 -3.2992 -5.1564 26 16 13.2225 -3.4424 -3.7013 27 7 11.8630 -3.5507 -2.9446 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3634 0.0060 30 1 5.9275 -1.8595 -0.8719 31 1 5.9206 -1.8541 0.9081 32 1 6.3146 -3.5892 2.1290 33 1 4.9983 -4.6913 1.6195 34 1 6.4797 -6.4402 1.1445 35 1 7.5367 -5.5806 2.3036 36 1 7.9370 -5.9332 -0.5608 37 1 8.9939 -5.0718 0.5987 38 1 7.2165 -4.6701 -2.3028 39 1 7.1393 -2.8923 -2.2606 40 1 9.7419 -3.7602 -1.5025 41 1 10.7538 -3.2538 -5.9998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317499740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = 6.931240 kcal Electronic energy + Delta-G solvation = -26336.368672 eV Core-core repulsion = 22378.971975 eV Total energy + Delta-G solvation = -3957.396697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.53708 -39.82227 -38.99792 -37.77484 -35.11690 -34.02070 -33.88753 -32.16404 -31.55092 -30.24447 -27.89634 -26.95096 -25.38934 -24.01682 -23.07656 -21.29555 -20.60410 -20.37290 -19.83260 -19.32575 -18.30425 -18.15151 -16.58348 -16.38624 -16.04028 -15.80104 -15.68854 -15.10064 -15.00737 -14.77759 -14.57012 -14.16406 -13.63570 -13.45806 -13.08433 -12.82119 -12.71691 -12.51187 -12.30148 -12.01952 -11.92420 -11.77018 -11.66782 -11.51481 -11.32227 -11.23710 -11.06228 -10.97405 -10.58043 -10.55836 -10.46134 -9.95151 -9.71643 -9.52996 -9.33142 -8.68461 -8.16884 -8.13155 -6.28194 -3.79298 -0.05948 0.89779 1.10798 1.14412 2.66406 2.76484 3.03576 3.08855 3.16591 3.76283 3.87125 4.06153 4.12643 4.37289 4.43688 4.52306 4.63279 4.79901 4.94586 5.03756 5.07700 5.13331 5.23187 5.33211 5.54325 5.56808 5.61367 5.71639 5.79131 5.82737 5.90114 5.91063 6.00831 6.07131 6.13688 6.28005 6.94243 7.02674 7.11218 7.61110 7.75972 8.17441 8.63561 8.98678 9.45656 9.87290 10.85083 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002398 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.530779 B =11674.540656 C =12992.515901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.302 4.302 8 H 0.120 0.880 9 N -0.594 5.594 10 C 0.456 3.544 11 O -0.555 6.555 12 C 0.029 3.971 13 N -0.474 5.474 14 C 0.039 3.961 15 C -0.123 4.123 16 C -0.119 4.119 17 C 0.047 3.953 18 H 0.057 0.943 19 C 0.131 3.869 20 N -0.706 5.706 21 C 0.602 3.398 22 O -0.516 6.516 23 C 0.014 3.986 24 C 0.091 3.909 25 N -0.577 5.577 26 S 0.719 5.281 27 N -0.549 5.549 28 H 0.273 0.727 29 H 0.369 0.631 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.408 0.592 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.864 -6.081 -2.554 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.137 0.863 9 N -0.234 5.234 10 C 0.241 3.759 11 O -0.436 6.436 12 C -0.103 4.103 13 N -0.198 5.198 14 C -0.089 4.089 15 C -0.161 4.161 16 C -0.157 4.157 17 C -0.062 4.062 18 H 0.075 0.925 19 C 0.008 3.992 20 N -0.357 5.357 21 C 0.382 3.618 22 O -0.390 6.390 23 C -0.161 4.161 24 C -0.102 4.102 25 N -0.418 5.418 26 S 0.760 5.240 27 N -0.399 5.399 28 H 0.083 0.917 29 H 0.202 0.798 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.243 0.757 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 30.234 -6.942 -2.857 31.152 hybrid contribution -0.315 2.077 0.268 2.118 sum 29.918 -4.865 -2.589 30.421 Atomic orbital electron populations 1.69615 1.05613 1.27421 1.49618 1.25029 0.95480 0.97915 0.97781 0.86683 0.79697 0.84150 0.78907 1.19593 1.20244 1.19619 1.19418 0.79198 0.96594 1.47907 0.86272 1.42206 1.07526 1.06093 1.67552 1.19549 0.87828 0.84570 0.83960 1.90563 1.69239 1.30832 1.52989 1.22159 0.96332 0.90003 1.01844 1.64889 1.13394 1.17485 1.24049 1.23159 1.01357 0.95736 0.88604 1.22288 0.96598 0.99295 0.97902 1.22372 0.98492 0.96242 0.98610 1.22835 0.90959 0.98019 0.94377 0.92480 1.21385 0.79280 1.04125 0.94451 1.45732 1.09470 1.72901 1.07643 1.16691 0.84269 0.77556 0.83319 1.90892 1.50995 1.49615 1.47500 1.22557 0.95722 1.07956 0.89900 1.23828 0.89030 0.98214 0.99151 1.72286 1.15994 1.23760 1.29745 1.79103 1.12822 1.46535 0.85507 1.72439 1.07135 1.21195 1.39125 0.91662 0.79820 0.89292 0.92758 0.94140 0.88545 0.90744 0.91509 0.90618 0.91434 0.89727 0.90329 0.75706 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.54 27.74 -169.99 -4.72 14.83 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.46 6.51 56.52 0.37 -5.09 16 7 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 9 N -0.59 -14.21 5.09 -10.96 -0.06 -14.27 16 10 C 0.46 10.34 7.69 -10.98 -0.08 10.25 16 11 O -0.56 -14.89 15.29 5.54 0.08 -14.80 16 12 C 0.03 0.47 5.31 -4.97 -0.03 0.44 16 13 N -0.47 -7.18 4.56 -223.57 -1.02 -8.20 16 14 C 0.04 0.54 6.07 -2.18 -0.01 0.53 16 15 C -0.12 -1.29 7.00 -25.35 -0.18 -1.46 16 16 C -0.12 -1.11 6.35 -25.35 -0.16 -1.27 16 17 C 0.05 0.52 2.29 -66.07 -0.15 0.37 16 18 H 0.06 0.57 8.00 -51.93 -0.42 0.15 16 19 C 0.13 1.51 5.26 -4.04 -0.02 1.49 16 20 N -0.71 -6.83 5.45 -61.28 -0.33 -7.16 16 21 C 0.60 6.69 7.82 -12.38 -0.10 6.59 16 22 O -0.52 -7.38 16.80 5.31 0.09 -7.29 16 23 C 0.01 0.13 6.81 -83.71 -0.57 -0.44 16 24 C 0.09 0.75 11.22 -17.88 -0.20 0.55 16 25 N -0.58 -4.63 11.41 19.41 0.22 -4.41 16 26 S 0.72 4.11 23.69 -107.50 -2.55 1.56 16 27 N -0.55 -4.31 11.00 23.18 0.26 -4.06 16 28 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.37 7.78 5.76 -40.82 -0.24 7.54 16 30 H 0.09 1.30 7.02 -51.93 -0.36 0.94 16 31 H 0.05 0.78 7.64 -51.93 -0.40 0.39 16 32 H 0.04 0.52 7.67 -51.93 -0.40 0.12 16 33 H 0.10 1.62 7.65 -51.93 -0.40 1.22 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.72 7.74 -51.93 -0.40 0.32 16 37 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 38 H 0.08 1.09 7.97 -51.93 -0.41 0.67 16 39 H 0.08 1.03 7.17 -51.93 -0.37 0.66 16 40 H 0.41 3.18 7.96 -40.82 -0.33 2.86 16 41 H 0.22 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 359.95 15.07 5.42 5.42 Total: -1.00 -35.04 359.95 -8.54 -43.58 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -4.97 Total: 10.67 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -1.75 Total: 9.33 kcal Atomic # 7 Polarization: -63.14 SS G_CDS: -0.16 Total: -63.30 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: 0.17 Total: -22.10 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.72 Total: 14.83 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -2.55 Total: 1.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.04 -8.54 -43.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317499740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.515 kcal (2) G-P(sol) polarization free energy of solvation -35.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds