Wall clock time and date at job start Tue Mar 31 2020 22:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48501 * 109.46686 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.46754 * 29.99503 * 3 2 1 6 6 H 1.48495 * 109.47183 * 149.99821 * 3 2 1 7 7 C 1.38963 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99494 * 359.97438 * 7 2 1 9 9 N 1.37089 * 119.99926 * 180.27840 * 7 2 1 10 10 C 1.34774 * 120.00006 * 179.72178 * 9 7 2 11 11 O 1.21295 * 120.00103 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00295 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47136 * 179.97438 * 12 10 9 14 14 C 1.48554 * 111.00197 * 279.71306 * 13 12 10 15 15 C 1.54383 * 104.59218 * 200.96064 * 14 13 12 16 16 C 1.54257 * 105.06392 * 23.84978 * 15 14 13 17 17 C 1.48561 * 110.99769 * 164.29218 * 13 12 10 18 18 H 1.08999 * 110.41091 * 40.26463 * 17 13 12 19 19 C 1.53003 * 110.41185 * 277.93794 * 17 13 12 20 20 N 1.46504 * 109.47166 * 174.67337 * 19 17 13 21 21 C 1.34775 * 120.00063 * 184.89174 * 20 19 17 22 22 O 1.21566 * 119.99885 * 359.97438 * 21 20 19 23 23 C 1.47745 * 120.00088 * 180.02562 * 21 20 19 24 24 C 1.39346 * 124.12125 * 180.02562 * 23 21 20 25 25 N 1.30094 * 112.15013 * 179.97438 * 24 23 21 26 26 S 1.55915 * 108.75122 * 359.97438 * 25 24 23 27 27 N 1.31499 * 124.11538 * 359.69985 * 23 21 20 28 28 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 29 29 H 0.96997 * 120.00495 * 359.72302 * 9 7 2 30 30 H 1.08998 * 109.47314 * 300.00208 * 12 10 9 31 31 H 1.08998 * 109.46865 * 60.00478 * 12 10 9 32 32 H 1.08998 * 110.41236 * 319.73799 * 14 13 12 33 33 H 1.09005 * 110.41546 * 82.18324 * 14 13 12 34 34 H 1.09003 * 110.32624 * 264.95458 * 15 14 13 35 35 H 1.09001 * 110.41361 * 142.79631 * 15 14 13 36 36 H 1.08993 * 110.32967 * 241.10611 * 16 15 14 37 37 H 1.09007 * 110.32029 * 118.89456 * 16 15 14 38 38 H 1.08998 * 109.47078 * 294.67947 * 19 17 13 39 39 H 1.09004 * 109.46744 * 54.67479 * 19 17 13 40 40 H 0.97002 * 119.99705 * 4.89791 * 20 19 17 41 41 H 1.08003 * 123.92221 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4454 2.6526 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3705 0.0125 11 8 3.4472 -3.4210 0.0125 12 6 5.5607 -2.3706 0.0183 13 7 6.0503 -3.7556 0.0250 14 6 6.0019 -4.3307 1.3939 15 6 7.0011 -5.5070 1.3571 16 6 7.9787 -5.1670 0.2133 17 6 7.4880 -3.8137 -0.3448 18 1 8.0332 -2.9913 0.1183 19 6 7.6500 -3.7706 -1.8656 20 7 9.0738 -3.7008 -2.2033 21 6 9.4554 -3.5541 -3.4875 22 8 8.6181 -3.4802 -4.3657 23 6 10.8914 -3.4842 -3.8281 24 6 11.3809 -3.3333 -5.1240 25 7 12.6810 -3.2992 -5.1564 26 16 13.2225 -3.4424 -3.7013 27 7 11.8630 -3.5507 -2.9446 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3634 0.0060 30 1 5.9275 -1.8595 -0.8719 31 1 5.9206 -1.8541 0.9081 32 1 6.3146 -3.5892 2.1290 33 1 4.9983 -4.6913 1.6195 34 1 6.4797 -6.4402 1.1445 35 1 7.5367 -5.5806 2.3036 36 1 7.9370 -5.9332 -0.5608 37 1 8.9939 -5.0718 0.5987 38 1 7.2165 -4.6701 -2.3028 39 1 7.1393 -2.8923 -2.2606 40 1 9.7419 -3.7602 -1.5025 41 1 10.7538 -3.2538 -5.9998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317499740.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:17 Heat of formation + Delta-G solvation = -23.727549 kcal Electronic energy + Delta-G solvation = -26337.698137 eV Core-core repulsion = 22378.971975 eV Total energy + Delta-G solvation = -3958.726162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18212 -40.89914 -40.12717 -39.27397 -36.11491 -35.86510 -34.59938 -33.79353 -33.14908 -31.14231 -28.57723 -28.47381 -26.35157 -25.70402 -23.80991 -22.30874 -21.49076 -21.25515 -21.17285 -20.37746 -20.20398 -18.92703 -17.65459 -17.43113 -17.16502 -16.92846 -16.53993 -16.51020 -16.06326 -15.93494 -15.83663 -15.25069 -15.12254 -14.60083 -14.51297 -14.30434 -14.19682 -13.67818 -13.29501 -13.10069 -12.96936 -12.93895 -12.53067 -12.42664 -12.29514 -12.25827 -12.15275 -12.09557 -11.98320 -11.87203 -11.50248 -11.37284 -11.30055 -10.43659 -10.37603 -10.23489 -10.08875 -9.40052 -8.40659 -6.01114 -0.65738 0.34327 0.44397 0.63881 1.28783 1.35464 1.43454 1.85568 1.97417 1.98218 2.22920 2.68158 3.14554 3.24460 3.41065 3.57178 3.63574 3.78047 3.99976 4.01825 4.11115 4.20005 4.29893 4.34354 4.40162 4.49066 4.50867 4.68068 4.78533 4.95618 5.02741 5.05467 5.20340 5.24513 5.30553 5.33746 5.53466 5.87800 5.93599 6.02159 6.35322 6.60881 6.89807 6.98271 7.41152 7.99355 8.77202 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.002398 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.530779 B =11674.540656 C =12992.515901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.326 4.326 8 H 0.054 0.946 9 N -0.595 5.595 10 C 0.453 3.547 11 O -0.606 6.606 12 C 0.042 3.958 13 N -0.508 5.508 14 C 0.036 3.964 15 C -0.116 4.116 16 C -0.112 4.112 17 C 0.056 3.944 18 H 0.084 0.916 19 C 0.138 3.862 20 N -0.691 5.691 21 C 0.603 3.397 22 O -0.557 6.557 23 C -0.004 4.004 24 C 0.086 3.914 25 N -0.602 5.602 26 S 0.803 5.197 27 N -0.558 5.558 28 H 0.279 0.721 29 H 0.388 0.612 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.420 0.580 41 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.986 -4.373 -1.683 35.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.784 3.216 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.154 1.154 7 C -0.455 4.455 8 H 0.072 0.928 9 N -0.237 5.237 10 C 0.241 3.759 11 O -0.489 6.489 12 C -0.090 4.090 13 N -0.232 5.232 14 C -0.092 4.092 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.053 4.053 18 H 0.102 0.898 19 C 0.014 3.986 20 N -0.343 5.343 21 C 0.384 3.616 22 O -0.435 6.435 23 C -0.176 4.176 24 C -0.105 4.105 25 N -0.444 5.444 26 S 0.844 5.156 27 N -0.411 5.411 28 H 0.088 0.912 29 H 0.224 0.776 30 H 0.131 0.869 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.258 0.742 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 35.390 -5.253 -1.970 35.832 hybrid contribution -1.839 1.383 0.010 2.301 sum 33.552 -3.870 -1.960 33.831 Atomic orbital electron populations 1.69801 1.08116 1.29180 1.50548 1.26112 0.96480 1.02689 0.96218 0.85373 0.79520 0.76807 0.79867 1.18362 1.19935 1.15381 1.18983 0.81483 0.94854 1.50161 0.92764 1.42045 1.05815 1.07564 1.68298 1.20875 0.90755 0.83271 0.81010 1.90542 1.71264 1.32733 1.54383 1.22032 0.90768 0.91742 1.04427 1.64733 1.16587 1.16818 1.25104 1.23119 1.00114 0.97467 0.88483 1.22258 0.96088 0.97199 0.99841 1.22390 0.99802 0.94896 0.97906 1.22849 0.88564 1.00092 0.93764 0.89814 1.21170 0.80147 1.02403 0.94929 1.45530 1.08866 1.72220 1.07683 1.16946 0.84962 0.76621 0.83117 1.90869 1.52419 1.51560 1.48622 1.22130 0.94785 1.10333 0.90396 1.23846 0.89252 0.98177 0.99223 1.72170 1.15947 1.24592 1.31735 1.78808 1.10400 1.42921 0.83447 1.72245 1.07910 1.21208 1.39705 0.91192 0.77619 0.86933 0.89468 0.92522 0.92927 0.91898 0.88771 0.91074 0.87898 0.91703 0.92058 0.74221 0.76376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.96 21.67 0.30 -57.03 16 2 C -0.02 -0.94 5.50 84.93 0.47 -0.47 16 3 Si 0.96 39.49 27.74 68.60 1.90 41.39 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.23 -7.89 6.51 99.48 0.65 -7.24 16 7 C -0.33 -19.44 10.16 84.05 0.85 -18.59 16 8 H 0.05 3.86 7.39 -2.91 -0.02 3.84 16 9 N -0.59 -28.67 5.09 -306.98 -1.56 -30.23 16 10 C 0.45 20.93 7.69 87.66 0.67 21.60 16 11 O -0.61 -34.41 15.29 -3.08 -0.05 -34.46 16 12 C 0.04 1.30 5.31 85.56 0.45 1.75 16 13 N -0.51 -14.82 4.56 -861.23 -3.93 -18.74 16 14 C 0.04 0.96 6.07 86.45 0.53 1.49 16 15 C -0.12 -2.18 7.00 31.49 0.22 -1.96 16 16 C -0.11 -1.72 6.35 31.49 0.20 -1.52 16 17 C 0.06 1.07 2.29 45.06 0.10 1.18 16 18 H 0.08 1.24 8.00 -2.39 -0.02 1.22 16 19 C 0.14 3.00 5.26 86.38 0.45 3.46 16 20 N -0.69 -11.99 5.45 -466.05 -2.54 -14.53 16 21 C 0.60 12.82 7.82 86.76 0.68 13.50 16 22 O -0.56 -16.13 16.80 -3.92 -0.07 -16.20 16 23 C 0.00 -0.06 6.81 41.98 0.29 0.22 16 24 C 0.09 1.32 11.22 85.22 0.96 2.28 16 25 N -0.60 -8.37 11.41 -92.49 -1.06 -9.43 16 26 S 0.80 6.65 23.69 -56.49 -1.34 5.31 16 27 N -0.56 -7.17 11.00 -80.59 -0.89 -8.05 16 28 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.39 15.50 5.76 -92.71 -0.53 14.96 16 30 H 0.11 2.98 7.02 -2.39 -0.02 2.96 16 31 H 0.09 2.17 7.64 -2.39 -0.02 2.15 16 32 H 0.06 1.32 7.67 -2.39 -0.02 1.30 16 33 H 0.05 1.86 7.65 -2.38 -0.02 1.84 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.19 7.74 -2.39 -0.02 1.17 16 37 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.06 1.68 7.97 -2.39 -0.02 1.66 16 39 H 0.06 1.56 7.17 -2.39 -0.02 1.55 16 40 H 0.42 5.15 7.96 -92.71 -0.74 4.42 16 41 H 0.22 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -84.33 359.95 -3.57 -87.91 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.23 Total: 31.14 kcal Atomic # 6 Polarization: 17.06 SS G_CDS: 5.87 Total: 22.93 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -9.67 Total: -138.02 kcal Atomic # 8 Polarization: -50.54 SS G_CDS: -0.11 Total: -50.66 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -1.34 Total: 5.31 kcal Total: -84.33 -3.57 -87.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317499740.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.180 kcal (2) G-P(sol) polarization free energy of solvation -84.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds