Wall clock time and date at job start Tue Mar 31 2020 22:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00397 * 2 1 4 4 H 1.48498 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46684 * 299.99842 * 3 2 1 6 6 H 1.48498 * 109.46920 * 59.99390 * 3 2 1 7 7 C 1.38955 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99686 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99882 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99807 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99884 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47300 * 181.34096 * 12 10 9 14 14 C 1.46897 * 111.00191 * 162.31707 * 13 12 10 15 15 C 1.52998 * 109.47153 * 189.99948 * 14 13 12 16 16 N 1.46505 * 109.47371 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00006 * 179.97438 * 16 15 14 18 18 O 1.21568 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.47757 * 119.99695 * 180.02562 * 17 16 15 20 20 C 1.39357 * 124.11377 * 179.97438 * 19 17 16 21 21 N 1.30091 * 112.14327 * 180.26326 * 20 19 17 22 22 S 1.55929 * 108.75470 * 359.60333 * 21 20 19 23 23 N 1.31487 * 124.11803 * 0.02562 * 19 17 16 24 24 C 1.46898 * 110.99864 * 286.27293 * 13 12 10 25 25 C 1.52997 * 117.50265 * 3.74686 * 24 13 12 26 26 C 1.52994 * 117.50092 * 295.12333 * 24 13 12 27 27 H 0.96998 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00082 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.47353 * 61.34157 * 12 10 9 30 30 H 1.09003 * 109.47098 * 301.34322 * 12 10 9 31 31 H 1.09003 * 109.47027 * 70.00140 * 14 13 12 32 32 H 1.08998 * 109.47313 * 310.00051 * 14 13 12 33 33 H 1.09003 * 109.46997 * 60.00173 * 15 14 13 34 34 H 1.09001 * 109.47813 * 300.00265 * 15 14 13 35 35 H 0.96997 * 119.99416 * 0.02562 * 16 15 14 36 36 H 1.08001 * 123.92738 * 0.02562 * 20 19 17 37 37 H 1.09004 * 115.55023 * 149.45182 * 24 13 12 38 38 H 1.09004 * 117.49808 * 359.97438 * 25 24 13 39 39 H 1.08996 * 117.50376 * 145.01509 * 25 24 13 40 40 H 1.09002 * 117.50010 * 214.98378 * 26 24 13 41 41 H 1.09000 * 117.49739 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1979 -5.9794 0.0334 14 6 1.5385 -7.2236 0.4518 15 6 2.5959 -8.2978 0.7143 16 7 1.9383 -9.5385 1.1322 17 6 2.6767 -10.6290 1.4186 18 8 3.8883 -10.5830 1.3306 19 6 2.0134 -11.8805 1.8395 20 6 2.6913 -13.0564 2.1550 21 7 1.8792 -14.0157 2.4905 22 16 0.4162 -13.4804 2.4236 23 7 0.7117 -12.0205 1.9610 24 6 2.8581 -6.1454 -1.2683 25 6 2.5312 -5.1260 -2.3614 26 6 1.9845 -6.5518 -2.4568 27 1 -0.4850 0.8401 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6348 -4.9314 -0.9005 30 1 0.5994 -4.9101 0.8791 31 1 0.8657 -7.5610 -0.3366 32 1 0.9688 -7.0440 1.3635 33 1 3.2687 -7.9603 1.5027 34 1 3.1657 -8.4774 -0.1974 35 1 0.9716 -9.5752 1.2020 36 1 3.7658 -13.1605 2.1210 37 1 3.8744 -6.5378 -1.2333 38 1 1.8259 -4.3323 -2.1148 39 1 3.3325 -4.8474 -3.0457 40 1 2.4261 -7.2113 -3.2039 41 1 0.9199 -6.6963 -2.2727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317548689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:31 Heat of formation + Delta-G solvation = 38.069140 kcal Electronic energy + Delta-G solvation = -26079.394184 eV Core-core repulsion = 22123.347727 eV Total energy + Delta-G solvation = -3956.046456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52409 -39.74262 -39.16944 -37.31830 -35.46833 -34.12122 -33.86745 -33.11277 -31.21256 -29.73997 -27.88648 -26.37105 -24.32127 -23.85356 -22.72265 -21.89251 -20.78572 -20.08823 -19.83279 -18.83905 -18.03072 -17.77686 -16.94637 -16.54130 -16.26130 -15.89518 -15.74621 -15.37995 -14.90446 -14.49488 -14.23591 -13.93855 -13.91656 -13.42927 -13.39319 -12.72890 -12.62053 -12.35770 -11.97715 -11.91257 -11.66998 -11.54953 -11.50831 -11.49722 -11.23269 -11.03066 -10.98698 -10.50436 -10.44724 -10.33275 -10.20686 -9.90588 -9.71000 -9.46797 -9.30769 -8.49219 -7.94819 -7.90490 -6.39989 -3.80335 -0.04882 0.90818 1.10996 1.15087 2.66707 2.76731 3.17285 3.27874 3.35113 3.81752 3.94387 4.05412 4.07846 4.24056 4.42565 4.64073 4.72348 4.93770 5.03097 5.10012 5.11589 5.15122 5.18558 5.27311 5.39676 5.65450 5.74680 5.78339 5.84386 5.88731 5.91722 6.07186 6.20742 6.26241 6.30108 6.46175 7.06634 7.15517 7.22931 7.57313 7.76165 8.08244 8.64351 9.20968 9.56631 10.09195 10.78022 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025623 B = 0.001872 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.515963 B =14955.930739 C =15257.826617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.020 3.980 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.294 4.294 8 H 0.103 0.897 9 N -0.569 5.569 10 C 0.448 3.552 11 O -0.566 6.566 12 C 0.039 3.961 13 N -0.479 5.479 14 C 0.046 3.954 15 C 0.124 3.876 16 N -0.706 5.706 17 C 0.604 3.396 18 O -0.519 6.519 19 C 0.013 3.987 20 C 0.091 3.909 21 N -0.578 5.578 22 S 0.720 5.280 23 N -0.548 5.548 24 C 0.041 3.959 25 C -0.165 4.165 26 C -0.228 4.228 27 H 0.270 0.730 28 H 0.390 0.610 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.408 0.592 36 H 0.216 0.784 37 H 0.123 0.877 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 -25.694 1.740 26.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.181 4.181 3 Si 0.755 3.245 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.424 4.424 8 H 0.121 0.879 9 N -0.207 5.207 10 C 0.233 3.767 11 O -0.449 6.449 12 C -0.093 4.093 13 N -0.202 5.202 14 C -0.082 4.082 15 C 0.000 4.000 16 N -0.357 5.357 17 C 0.383 3.617 18 O -0.394 6.394 19 C -0.162 4.162 20 C -0.103 4.103 21 N -0.419 5.419 22 S 0.762 5.238 23 N -0.398 5.398 24 C -0.068 4.068 25 C -0.203 4.203 26 C -0.267 4.267 27 H 0.080 0.920 28 H 0.223 0.777 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.243 0.757 36 H 0.232 0.768 37 H 0.140 0.860 38 H 0.122 0.878 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.750 -26.341 2.450 26.719 hybrid contribution 0.129 1.534 -0.914 1.790 sum -3.620 -24.807 1.536 25.117 Atomic orbital electron populations 1.69618 1.05902 1.27935 1.51093 1.25243 0.95626 0.99653 0.97560 0.85820 0.79737 0.81272 0.77644 1.19235 1.20849 1.20824 1.19726 0.93343 0.82149 1.47187 0.87883 1.41862 1.09080 1.04546 1.65223 1.19589 0.88502 0.84281 0.84364 1.90544 1.13434 1.86772 1.54124 1.22018 0.93957 0.91607 1.01687 1.61450 1.29857 1.02135 1.26718 1.22245 0.95243 0.90004 1.00737 1.21388 0.95465 0.81442 1.01667 1.45724 1.11131 1.11212 1.67645 1.16670 0.86003 0.81179 0.77834 1.90870 1.12626 1.83300 1.52569 1.22560 0.87352 0.98949 1.07328 1.23816 1.03342 0.85945 0.97176 1.72281 1.09157 1.35980 1.24453 1.79127 1.09572 0.92463 1.42649 1.72439 1.20230 1.26426 1.20724 1.22631 0.97963 1.03514 0.82664 1.23240 1.03628 0.92262 1.01125 1.23474 0.99946 0.99779 1.03543 0.92022 0.77660 0.92732 0.89408 0.93961 0.90040 0.89692 0.90533 0.75659 0.76793 0.85964 0.87847 0.88586 0.88894 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.65 16 2 C 0.02 0.54 5.50 -17.47 -0.10 0.44 16 3 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.29 -8.09 9.68 -14.94 -0.14 -8.23 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.57 -14.06 5.29 -10.96 -0.06 -14.12 16 10 C 0.45 10.19 5.84 -10.98 -0.06 10.12 16 11 O -0.57 -14.89 14.79 5.55 0.08 -14.81 16 12 C 0.04 0.65 5.00 -4.98 -0.02 0.63 16 13 N -0.48 -7.43 4.34 -228.09 -0.99 -8.42 16 14 C 0.05 0.52 4.96 -3.83 -0.02 0.50 16 15 C 0.12 1.39 5.67 -4.04 -0.02 1.36 16 16 N -0.71 -6.85 5.55 -61.27 -0.34 -7.19 16 17 C 0.60 6.60 7.82 -12.37 -0.10 6.50 16 18 O -0.52 -7.15 16.81 5.31 0.09 -7.06 16 19 C 0.01 0.12 6.81 -83.71 -0.57 -0.45 16 20 C 0.09 0.73 11.22 -17.87 -0.20 0.53 16 21 N -0.58 -4.60 11.41 19.43 0.22 -4.37 16 22 S 0.72 4.19 23.69 -107.50 -2.55 1.64 16 23 N -0.55 -4.40 11.00 23.18 0.26 -4.15 16 24 C 0.04 0.62 4.55 -67.72 -0.31 0.32 16 25 C -0.17 -2.67 8.48 -26.74 -0.23 -2.89 16 26 C -0.23 -2.91 9.26 -26.74 -0.25 -3.16 16 27 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 28 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 29 H 0.05 0.85 5.99 -51.92 -0.31 0.54 16 30 H 0.09 1.33 7.77 -51.93 -0.40 0.93 16 31 H 0.04 0.43 6.87 -51.93 -0.36 0.07 16 32 H 0.08 0.85 7.84 -51.93 -0.41 0.44 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.08 0.91 7.30 -51.93 -0.38 0.53 16 35 H 0.41 3.26 8.06 -40.82 -0.33 2.93 16 36 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.12 1.83 8.03 -51.93 -0.42 1.41 16 38 H 0.10 1.91 4.92 -51.93 -0.26 1.65 16 39 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 1.05 7.15 -51.93 -0.37 0.68 16 LS Contribution 361.39 15.07 5.45 5.45 Total: -1.00 -32.96 361.39 -8.92 -41.87 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -4.75 Total: 13.15 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -2.02 Total: 5.68 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.19 Total: -61.90 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: 0.17 Total: -21.87 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -2.55 Total: 1.64 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.96 -8.92 -41.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317548689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.940 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds