Wall clock time and date at job start Tue Mar 31 2020 22:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86804 * 120.00397 * 2 1 4 4 H 1.48498 * 109.47288 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46684 * 299.99842 * 3 2 1 6 6 H 1.48498 * 109.46920 * 59.99390 * 3 2 1 7 7 C 1.38955 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99686 * 180.02562 * 7 2 1 9 9 N 1.37089 * 120.00101 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99882 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99807 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99884 * 179.97438 * 10 9 7 13 13 N 1.46900 * 109.47300 * 181.34096 * 12 10 9 14 14 C 1.46897 * 111.00191 * 162.31707 * 13 12 10 15 15 C 1.52998 * 109.47153 * 189.99948 * 14 13 12 16 16 N 1.46505 * 109.47371 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00006 * 179.97438 * 16 15 14 18 18 O 1.21568 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.47757 * 119.99695 * 180.02562 * 17 16 15 20 20 C 1.39357 * 124.11377 * 179.97438 * 19 17 16 21 21 N 1.30091 * 112.14327 * 180.26326 * 20 19 17 22 22 S 1.55929 * 108.75470 * 359.60333 * 21 20 19 23 23 N 1.31487 * 124.11803 * 0.02562 * 19 17 16 24 24 C 1.46898 * 110.99864 * 286.27293 * 13 12 10 25 25 C 1.52997 * 117.50265 * 3.74686 * 24 13 12 26 26 C 1.52994 * 117.50092 * 295.12333 * 24 13 12 27 27 H 0.96998 * 119.99739 * 0.02562 * 1 2 3 28 28 H 0.96993 * 120.00082 * 359.97438 * 9 7 2 29 29 H 1.09009 * 109.47353 * 61.34157 * 12 10 9 30 30 H 1.09003 * 109.47098 * 301.34322 * 12 10 9 31 31 H 1.09003 * 109.47027 * 70.00140 * 14 13 12 32 32 H 1.08998 * 109.47313 * 310.00051 * 14 13 12 33 33 H 1.09003 * 109.46997 * 60.00173 * 15 14 13 34 34 H 1.09001 * 109.47813 * 300.00265 * 15 14 13 35 35 H 0.96997 * 119.99416 * 0.02562 * 16 15 14 36 36 H 1.08001 * 123.92738 * 0.02562 * 20 19 17 37 37 H 1.09004 * 115.55023 * 149.45182 * 24 13 12 38 38 H 1.09004 * 117.49808 * 359.97438 * 25 24 13 39 39 H 1.08996 * 117.50376 * 145.01509 * 25 24 13 40 40 H 1.09002 * 117.50010 * 214.98378 * 26 24 13 41 41 H 1.09000 * 117.49739 * 359.97438 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3963 -1.2126 6 1 1.8894 2.3964 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8629 0.0011 13 7 2.1979 -5.9794 0.0334 14 6 1.5385 -7.2236 0.4518 15 6 2.5959 -8.2978 0.7143 16 7 1.9383 -9.5385 1.1322 17 6 2.6767 -10.6290 1.4186 18 8 3.8883 -10.5830 1.3306 19 6 2.0134 -11.8805 1.8395 20 6 2.6913 -13.0564 2.1550 21 7 1.8792 -14.0157 2.4905 22 16 0.4162 -13.4804 2.4236 23 7 0.7117 -12.0205 1.9610 24 6 2.8581 -6.1454 -1.2683 25 6 2.5312 -5.1260 -2.3614 26 6 1.9845 -6.5518 -2.4568 27 1 -0.4850 0.8401 -0.0004 28 1 0.3534 -2.3906 0.0005 29 1 0.6348 -4.9314 -0.9005 30 1 0.5994 -4.9101 0.8791 31 1 0.8657 -7.5610 -0.3366 32 1 0.9688 -7.0440 1.3635 33 1 3.2687 -7.9603 1.5027 34 1 3.1657 -8.4774 -0.1974 35 1 0.9716 -9.5752 1.2020 36 1 3.7658 -13.1605 2.1210 37 1 3.8744 -6.5378 -1.2333 38 1 1.8259 -4.3323 -2.1148 39 1 3.3325 -4.8474 -3.0457 40 1 2.4261 -7.2113 -3.2039 41 1 0.9199 -6.6963 -2.2727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317548689.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:30 Heat of formation + Delta-G solvation = 10.985041 kcal Electronic energy + Delta-G solvation = -26080.568638 eV Core-core repulsion = 22123.347727 eV Total energy + Delta-G solvation = -3957.220911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.16944 -41.01768 -40.12278 -38.94435 -36.40635 -35.84154 -34.81961 -34.16591 -33.19677 -30.86903 -28.76320 -27.65769 -26.05064 -24.73491 -23.58583 -23.04294 -21.65610 -21.40286 -20.43033 -20.38201 -19.68706 -18.82382 -18.09800 -17.63329 -17.24734 -17.17250 -16.56430 -16.36382 -16.23340 -15.96271 -15.60448 -15.23591 -15.10534 -14.89449 -14.57194 -14.14162 -13.56603 -13.47284 -13.30515 -13.13666 -13.02119 -12.72177 -12.52384 -12.37276 -12.29069 -12.26937 -12.13909 -12.09797 -12.09053 -11.59284 -11.46394 -11.32298 -11.03846 -10.36101 -10.26639 -10.07750 -9.94453 -9.17801 -8.42959 -5.90221 -0.65635 0.34528 0.44958 0.63407 1.37387 1.42275 1.55934 1.84196 1.98690 2.12855 2.31177 2.78876 2.90455 3.23706 3.39468 3.43874 3.70043 3.74596 3.96891 3.99084 4.02156 4.05376 4.14691 4.31883 4.40213 4.49077 4.51413 4.56530 4.73809 4.88995 4.96043 4.98121 5.16345 5.18093 5.24228 5.34820 5.45053 5.85114 6.08553 6.13135 6.35673 6.66375 6.97946 7.19038 7.63172 8.20443 8.74816 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025623 B = 0.001872 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.515963 B =14955.930739 C =15257.826617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.015 4.015 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.324 4.324 8 H 0.077 0.923 9 N -0.580 5.580 10 C 0.449 3.551 11 O -0.606 6.606 12 C 0.053 3.947 13 N -0.501 5.501 14 C 0.053 3.947 15 C 0.133 3.867 16 N -0.695 5.695 17 C 0.604 3.396 18 O -0.555 6.555 19 C -0.004 4.004 20 C 0.088 3.912 21 N -0.601 5.601 22 S 0.800 5.200 23 N -0.561 5.561 24 C 0.031 3.969 25 C -0.195 4.195 26 C -0.186 4.186 27 H 0.276 0.724 28 H 0.394 0.606 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.419 0.581 36 H 0.222 0.778 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.820 -27.378 1.809 28.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.215 4.215 3 Si 0.813 3.187 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.454 4.454 8 H 0.095 0.905 9 N -0.219 5.219 10 C 0.236 3.764 11 O -0.491 6.491 12 C -0.078 4.078 13 N -0.224 5.224 14 C -0.075 4.075 15 C 0.009 3.991 16 N -0.346 5.346 17 C 0.385 3.615 18 O -0.433 6.433 19 C -0.177 4.177 20 C -0.104 4.104 21 N -0.444 5.444 22 S 0.841 5.159 23 N -0.413 5.413 24 C -0.078 4.078 25 C -0.232 4.232 26 C -0.225 4.225 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.256 0.744 36 H 0.239 0.761 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.107 0.893 40 H 0.132 0.868 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.708 -28.039 2.518 28.724 hybrid contribution 0.660 1.917 -0.902 2.219 sum -5.048 -26.122 1.616 26.654 Atomic orbital electron populations 1.69673 1.06679 1.28965 1.51073 1.25966 0.96526 1.02200 0.96769 0.84925 0.78035 0.77517 0.78199 1.19968 1.19755 1.19776 1.19628 0.92534 0.84016 1.49212 0.90526 1.41915 1.09166 1.04637 1.66147 1.20626 0.88344 0.85671 0.81709 1.90514 1.15596 1.87695 1.55290 1.21827 0.93550 0.88802 1.03657 1.61309 1.30405 1.03445 1.27236 1.22258 0.95186 0.88047 1.01989 1.21147 0.95267 0.82031 1.00626 1.45569 1.11563 1.10421 1.67095 1.16903 0.85645 0.81848 0.77130 1.90848 1.14191 1.84044 1.54208 1.22190 0.87741 0.98465 1.09302 1.23869 1.03871 0.85671 0.96978 1.72183 1.10449 1.36535 1.25188 1.78842 1.07559 0.90164 1.39366 1.72256 1.19845 1.28232 1.21003 1.22635 0.98649 1.03370 0.83150 1.23147 1.03897 0.93517 1.02638 1.23504 1.00426 0.96772 1.01810 0.91504 0.77209 0.90848 0.87008 0.91691 0.88588 0.91778 0.91226 0.74390 0.76126 0.86479 0.90441 0.89341 0.86774 0.87876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.32 -18.33 9.68 84.04 0.81 -17.52 16 8 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 9 N -0.58 -29.29 5.29 -306.98 -1.62 -30.91 16 10 C 0.45 20.80 5.84 87.65 0.51 21.31 16 11 O -0.61 -33.00 14.79 -3.06 -0.05 -33.05 16 12 C 0.05 1.72 5.00 85.56 0.43 2.15 16 13 N -0.50 -14.95 4.34 -875.54 -3.80 -18.75 16 14 C 0.05 1.07 4.96 86.30 0.43 1.50 16 15 C 0.13 2.85 5.67 86.38 0.49 3.34 16 16 N -0.69 -12.48 5.55 -466.04 -2.59 -15.07 16 17 C 0.60 12.81 7.82 86.76 0.68 13.49 16 18 O -0.56 -15.46 16.81 -3.93 -0.07 -15.53 16 19 C 0.00 -0.07 6.81 41.98 0.29 0.22 16 20 C 0.09 1.33 11.22 85.22 0.96 2.28 16 21 N -0.60 -8.47 11.41 -92.43 -1.05 -9.53 16 22 S 0.80 7.24 23.69 -56.49 -1.34 5.90 16 23 N -0.56 -7.78 11.00 -80.57 -0.89 -8.67 16 24 C 0.03 0.91 4.55 44.91 0.20 1.11 16 25 C -0.19 -6.29 8.48 30.59 0.26 -6.03 16 26 C -0.19 -4.29 9.26 30.59 0.28 -4.01 16 27 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 28 H 0.39 18.91 7.90 -92.71 -0.73 18.18 16 29 H 0.07 2.15 5.99 -2.38 -0.01 2.13 16 30 H 0.11 3.12 7.77 -2.39 -0.02 3.10 16 31 H 0.07 1.07 6.87 -2.39 -0.02 1.05 16 32 H 0.10 1.70 7.84 -2.39 -0.02 1.68 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.60 7.30 -2.39 -0.02 1.59 16 35 H 0.42 5.71 8.06 -92.71 -0.75 4.96 16 36 H 0.22 2.77 8.06 -2.91 -0.02 2.75 16 37 H 0.12 3.53 8.03 -2.38 -0.02 3.52 16 38 H 0.08 2.91 4.92 -2.39 -0.01 2.90 16 39 H 0.09 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 41 H 0.10 2.09 7.15 -2.39 -0.02 2.07 16 Total: -1.00 -73.09 361.39 -3.65 -76.74 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.36 Total: 35.40 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 5.81 Total: 17.49 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -9.67 Total: -132.30 kcal Atomic # 8 Polarization: -48.47 SS G_CDS: -0.11 Total: -48.58 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 7.24 SS G_CDS: -1.34 Total: 5.90 kcal Total: -73.09 -3.65 -76.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317548689.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.727 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds