Wall clock time and date at job start Tue Mar 31 2020 22:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47030 * 240.00082 * 3 2 1 5 5 H 1.48492 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46937 * 120.00374 * 3 2 1 7 7 C 1.38948 * 119.99413 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00393 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99585 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00261 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47012 * 186.27036 * 12 10 9 14 14 C 1.46845 * 110.99786 * 190.60119 * 13 12 10 15 15 C 1.53044 * 109.52443 * 174.15662 * 14 13 12 16 16 C 1.53123 * 109.30697 * 59.15337 * 15 14 13 17 17 C 1.53114 * 109.16164 * 302.40731 * 16 15 14 18 18 H 1.08997 * 109.50545 * 297.63228 * 17 16 15 19 19 N 1.46507 * 109.50352 * 177.55620 * 17 16 15 20 20 C 1.34777 * 119.99527 * 85.07970 * 19 17 16 21 21 O 1.21617 * 120.00305 * 359.97438 * 20 19 17 22 22 C 1.47177 * 119.99693 * 179.97438 * 20 19 17 23 23 C 1.38241 * 128.47476 * 179.69885 * 22 20 19 24 24 N 1.31247 * 111.88464 * 179.81360 * 23 22 20 25 25 N 1.27333 * 120.03806 * 0.53848 * 24 23 22 26 26 S 1.56636 * 109.74195 * 359.68872 * 25 24 23 27 27 C 1.46841 * 111.00382 * 66.38532 * 13 12 10 28 28 H 0.97003 * 119.99617 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00319 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47472 * 66.26466 * 12 10 9 31 31 H 1.09003 * 109.46709 * 306.26334 * 12 10 9 32 32 H 1.09000 * 109.46239 * 294.16993 * 14 13 12 33 33 H 1.09000 * 109.46629 * 54.14034 * 14 13 12 34 34 H 1.08993 * 109.50250 * 179.11296 * 15 14 13 35 35 H 1.08995 * 109.49978 * 299.24038 * 15 14 13 36 36 H 1.09000 * 109.55790 * 182.47910 * 16 15 14 37 37 H 1.09001 * 109.49397 * 62.29259 * 16 15 14 38 38 H 0.96994 * 120.00252 * 265.07834 * 19 17 16 39 39 H 1.07992 * 124.05563 * 359.96813 * 23 22 20 40 40 H 1.08997 * 109.46537 * 65.82537 * 27 13 12 41 41 H 1.09000 * 109.45623 * 305.84806 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3906 -0.0005 10 6 1.9970 -3.5580 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1907 -5.9755 0.1503 14 6 1.5320 -7.2647 -0.0959 15 6 2.5750 -8.3845 -0.0734 16 6 3.2733 -8.3986 1.2893 17 6 3.9088 -7.0288 1.5426 18 1 4.6672 -6.8337 0.7844 19 7 4.5293 -7.0154 2.8697 20 6 5.7835 -7.4814 3.0320 21 8 6.4000 -7.9134 2.0768 22 6 6.4070 -7.4673 4.3651 23 6 7.6675 -7.9023 4.7297 24 7 7.8915 -7.7332 6.0118 25 7 6.9889 -7.2297 6.7556 26 16 5.7218 -6.8955 5.8975 27 6 2.8272 -5.9484 1.4732 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 -0.0005 30 1 0.7038 -4.9707 -0.9420 31 1 0.5350 -4.8738 0.8273 32 1 0.7877 -7.4461 0.6795 33 1 1.0435 -7.2429 -1.0700 34 1 2.0835 -9.3428 -0.2404 35 1 3.3120 -8.2110 -0.8574 36 1 4.0473 -9.1660 1.2947 37 1 2.5430 -8.6113 2.0701 38 1 4.0374 -6.6711 3.6316 39 1 8.3829 -8.3277 4.0416 40 1 2.0769 -6.1359 2.2413 41 1 3.2796 -4.9706 1.6385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317956297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:14 Heat of formation + Delta-G solvation = 10.200644 kcal Electronic energy + Delta-G solvation = -26585.377522 eV Core-core repulsion = 22628.122597 eV Total energy + Delta-G solvation = -3957.254925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18637 -40.18875 -38.94338 -37.59773 -34.98527 -33.97063 -32.86087 -32.31664 -31.25774 -29.95859 -27.76112 -27.48217 -24.76046 -23.98213 -23.02573 -22.15358 -20.90735 -20.03778 -19.54456 -19.19252 -17.90616 -17.79676 -16.50233 -16.23652 -16.07471 -15.62489 -15.19124 -15.03665 -14.88361 -14.63578 -14.40597 -14.08723 -13.98707 -13.48971 -13.31723 -13.18560 -13.05519 -12.60348 -12.33153 -12.02968 -11.61010 -11.53338 -11.41957 -11.10304 -10.96362 -10.77643 -10.71708 -10.63232 -10.47229 -10.45670 -10.34052 -10.24696 -10.21095 -9.51864 -9.31498 -8.51028 -8.03074 -7.95246 -6.45585 -3.86489 -0.63617 0.42972 1.10448 1.62096 2.59954 2.69572 3.17173 3.23484 3.27644 3.65013 3.85791 3.91964 4.19617 4.30955 4.37039 4.74359 4.80635 4.88782 4.98171 5.16188 5.20946 5.22241 5.29027 5.50580 5.54317 5.59512 5.72447 5.76272 5.90623 5.97000 6.01311 6.08716 6.19847 6.25886 6.31388 7.04132 7.15329 7.26800 7.27480 7.51412 7.75401 8.02075 8.57578 9.14281 9.50182 10.01841 10.71996 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.002845 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.505128 B = 9839.748708 C =11779.363951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.576 6.576 12 C 0.048 3.952 13 N -0.510 5.510 14 C 0.052 3.948 15 C -0.112 4.112 16 C -0.130 4.130 17 C 0.151 3.849 18 H 0.106 0.894 19 N -0.712 5.712 20 C 0.604 3.396 21 O -0.512 6.512 22 C -0.283 4.283 23 C 0.074 3.926 24 N -0.252 5.252 25 N -0.256 5.256 26 S 0.424 5.576 27 C 0.050 3.950 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.398 0.602 39 H 0.217 0.783 40 H 0.029 0.971 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.605 -17.409 8.364 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.460 6.460 12 C -0.083 4.083 13 N -0.235 5.235 14 C -0.076 4.076 15 C -0.150 4.150 16 C -0.169 4.169 17 C 0.047 3.953 18 H 0.124 0.876 19 N -0.363 5.363 20 C 0.386 3.614 21 O -0.387 6.387 22 C -0.425 4.425 23 C -0.093 4.093 24 N -0.116 5.116 25 N -0.238 5.238 26 S 0.559 5.441 27 C -0.079 4.079 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.232 0.768 39 H 0.233 0.767 40 H 0.047 0.953 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 3.775 -16.986 9.182 19.675 hybrid contribution -0.655 0.540 -0.338 0.914 sum 3.120 -16.446 8.845 18.932 Atomic orbital electron populations 1.69602 1.05936 1.28294 1.50485 1.25251 0.95619 0.99705 0.97270 0.85931 0.78785 0.80493 0.79112 1.19850 1.20974 1.19930 1.19641 0.93324 0.82205 1.47748 0.87968 1.41876 1.09181 1.04593 1.64380 1.19753 0.88463 0.84520 0.84701 1.90521 1.13580 1.86893 1.54996 1.21858 0.93507 0.91025 1.01925 1.61320 1.31556 1.01482 1.29135 1.22186 0.95288 0.89103 1.01050 1.21516 0.98534 0.97643 0.97334 1.21991 0.99894 0.97140 0.97859 1.21080 0.96080 0.94836 0.83281 0.87599 1.45871 1.14527 1.63621 1.12268 1.16412 0.81401 0.78470 0.85093 1.90869 1.62517 1.45874 1.39446 1.28122 1.00718 1.12469 1.01165 1.24493 0.95331 0.97931 0.91551 1.70709 1.22811 1.13914 1.04162 1.78887 1.01585 1.16863 1.26440 1.82667 1.23311 1.44503 0.93646 1.22339 0.95391 1.00711 0.89427 0.91801 0.77512 0.88940 0.93450 0.95062 0.90377 0.91174 0.90510 0.91262 0.92108 0.76807 0.76679 0.95294 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 8 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 9 N -0.56 -13.67 5.29 -10.96 -0.06 -13.73 16 10 C 0.44 9.82 7.31 -10.98 -0.08 9.74 16 11 O -0.58 -14.81 14.29 5.54 0.08 -14.73 16 12 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 13 N -0.51 -7.70 4.35 -236.12 -1.03 -8.72 16 14 C 0.05 0.59 5.46 -3.83 -0.02 0.57 16 15 C -0.11 -1.14 6.09 -26.64 -0.16 -1.30 16 16 C -0.13 -1.36 5.58 -26.61 -0.15 -1.51 16 17 C 0.15 1.90 2.62 -67.85 -0.18 1.72 16 18 H 0.11 1.66 7.58 -51.93 -0.39 1.26 16 19 N -0.71 -7.56 5.08 -54.88 -0.28 -7.84 16 20 C 0.60 7.08 7.77 -12.63 -0.10 6.98 16 21 O -0.51 -7.64 16.64 5.26 0.09 -7.55 16 22 C -0.28 -2.75 6.81 -35.95 -0.24 -2.99 16 23 C 0.07 0.70 11.55 -17.80 -0.21 0.50 16 24 N -0.25 -2.77 11.54 30.36 0.35 -2.42 16 25 N -0.26 -2.74 12.51 60.35 0.75 -1.98 16 26 S 0.42 3.36 23.05 -107.50 -2.48 0.89 16 27 C 0.05 0.71 4.59 -3.84 -0.02 0.69 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.39 9.09 7.90 -40.82 -0.32 8.76 16 30 H 0.09 1.37 7.97 -51.93 -0.41 0.96 16 31 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.83 8.01 -51.93 -0.42 0.41 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.40 3.24 8.03 -40.82 -0.33 2.91 16 39 H 0.22 1.59 8.06 -52.49 -0.42 1.16 16 40 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 1.86 6.06 -51.93 -0.31 1.55 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -32.71 361.12 -7.93 -40.64 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -5.08 Total: 10.17 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -1.42 Total: 7.42 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: 0.47 Total: -57.90 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.17 Total: -22.28 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -2.48 Total: 0.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.71 -7.93 -40.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317956297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.843 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds