Wall clock time and date at job start Tue Mar 31 2020 22:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47030 * 240.00082 * 3 2 1 5 5 H 1.48492 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46937 * 120.00374 * 3 2 1 7 7 C 1.38948 * 119.99413 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00135 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00294 * 359.97438 * 7 2 1 10 10 C 1.34782 * 120.00393 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99585 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00261 * 180.02562 * 10 9 7 13 13 N 1.46897 * 109.47012 * 186.27036 * 12 10 9 14 14 C 1.46845 * 110.99786 * 190.60119 * 13 12 10 15 15 C 1.53044 * 109.52443 * 174.15662 * 14 13 12 16 16 C 1.53123 * 109.30697 * 59.15337 * 15 14 13 17 17 C 1.53114 * 109.16164 * 302.40731 * 16 15 14 18 18 H 1.08997 * 109.50545 * 297.63228 * 17 16 15 19 19 N 1.46507 * 109.50352 * 177.55620 * 17 16 15 20 20 C 1.34777 * 119.99527 * 85.07970 * 19 17 16 21 21 O 1.21617 * 120.00305 * 359.97438 * 20 19 17 22 22 C 1.47177 * 119.99693 * 179.97438 * 20 19 17 23 23 C 1.38241 * 128.47476 * 179.69885 * 22 20 19 24 24 N 1.31247 * 111.88464 * 179.81360 * 23 22 20 25 25 N 1.27333 * 120.03806 * 0.53848 * 24 23 22 26 26 S 1.56636 * 109.74195 * 359.68872 * 25 24 23 27 27 C 1.46841 * 111.00382 * 66.38532 * 13 12 10 28 28 H 0.97003 * 119.99617 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00319 * 0.02562 * 9 7 2 30 30 H 1.08994 * 109.47472 * 66.26466 * 12 10 9 31 31 H 1.09003 * 109.46709 * 306.26334 * 12 10 9 32 32 H 1.09000 * 109.46239 * 294.16993 * 14 13 12 33 33 H 1.09000 * 109.46629 * 54.14034 * 14 13 12 34 34 H 1.08993 * 109.50250 * 179.11296 * 15 14 13 35 35 H 1.08995 * 109.49978 * 299.24038 * 15 14 13 36 36 H 1.09000 * 109.55790 * 182.47910 * 16 15 14 37 37 H 1.09001 * 109.49397 * 62.29259 * 16 15 14 38 38 H 0.96994 * 120.00252 * 265.07834 * 19 17 16 39 39 H 1.07992 * 124.05563 * 359.96813 * 23 22 20 40 40 H 1.08997 * 109.46537 * 65.82537 * 27 13 12 41 41 H 1.09000 * 109.45623 * 305.84806 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2833 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0087 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3906 -0.0005 10 6 1.9970 -3.5580 -0.0005 11 8 3.2100 -3.5580 -0.0010 12 6 1.2434 -4.8630 -0.0011 13 7 2.1907 -5.9755 0.1503 14 6 1.5320 -7.2647 -0.0959 15 6 2.5750 -8.3845 -0.0734 16 6 3.2733 -8.3986 1.2893 17 6 3.9088 -7.0288 1.5426 18 1 4.6672 -6.8337 0.7844 19 7 4.5293 -7.0154 2.8697 20 6 5.7835 -7.4814 3.0320 21 8 6.4000 -7.9134 2.0768 22 6 6.4070 -7.4673 4.3651 23 6 7.6675 -7.9023 4.7297 24 7 7.8915 -7.7332 6.0118 25 7 6.9889 -7.2297 6.7556 26 16 5.7218 -6.8955 5.8975 27 6 2.8272 -5.9484 1.4732 28 1 -0.4850 0.8401 -0.0004 29 1 0.3532 -2.3907 -0.0005 30 1 0.7038 -4.9707 -0.9420 31 1 0.5350 -4.8738 0.8273 32 1 0.7877 -7.4461 0.6795 33 1 1.0435 -7.2429 -1.0700 34 1 2.0835 -9.3428 -0.2404 35 1 3.3120 -8.2110 -0.8574 36 1 4.0473 -9.1660 1.2947 37 1 2.5430 -8.6113 2.0701 38 1 4.0374 -6.6711 3.6316 39 1 8.3829 -8.3277 4.0416 40 1 2.0769 -6.1359 2.2413 41 1 3.2796 -4.9706 1.6385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317956297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:14 Heat of formation + Delta-G solvation = -16.101466 kcal Electronic energy + Delta-G solvation = -26586.518067 eV Core-core repulsion = 22628.122597 eV Total energy + Delta-G solvation = -3958.395470 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98276 -41.19428 -40.31248 -39.02043 -36.15598 -35.77346 -33.89009 -33.23394 -33.12885 -30.91938 -28.99506 -28.47626 -26.49123 -24.87109 -24.20236 -23.07044 -21.82876 -21.01925 -20.90012 -20.28115 -19.83352 -18.68016 -17.70235 -17.49938 -17.04656 -16.70185 -16.51356 -16.26658 -16.00504 -15.80222 -15.71613 -15.40877 -15.23071 -14.79112 -14.53043 -14.38891 -13.87552 -13.76979 -13.53638 -13.25701 -13.08509 -12.99011 -12.72080 -12.41464 -12.37944 -12.12772 -11.94730 -11.77127 -11.66230 -11.46767 -11.42129 -11.23604 -11.22321 -10.96758 -10.34076 -10.18123 -9.96740 -9.16960 -8.44637 -5.92487 -1.41293 -0.29819 0.36611 0.82898 1.39946 1.42367 1.52333 1.68159 1.80492 2.09619 2.29657 2.80855 2.92179 3.23006 3.41180 3.49726 3.59415 3.81391 3.85033 4.07008 4.17083 4.28758 4.36685 4.47156 4.54051 4.59593 4.66070 4.69610 4.75981 4.94351 5.01370 5.08022 5.18188 5.24060 5.42445 5.43948 5.90708 6.09407 6.18978 6.25991 6.51144 6.64119 6.86357 7.16281 7.60764 8.17087 8.72479 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.002845 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.505128 B = 9839.748708 C =11779.363951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.988 3.012 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.440 3.560 11 O -0.615 6.615 12 C 0.061 3.939 13 N -0.536 5.536 14 C 0.052 3.948 15 C -0.109 4.109 16 C -0.121 4.121 17 C 0.158 3.842 18 H 0.066 0.934 19 N -0.704 5.704 20 C 0.607 3.393 21 O -0.550 6.550 22 C -0.303 4.303 23 C 0.079 3.921 24 N -0.275 5.275 25 N -0.286 5.286 26 S 0.504 5.496 27 C 0.055 3.945 28 H 0.277 0.723 29 H 0.396 0.604 30 H 0.113 0.887 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.411 0.589 39 H 0.231 0.769 40 H 0.056 0.944 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 -18.395 9.215 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.812 3.188 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.213 5.213 10 C 0.227 3.773 11 O -0.501 6.501 12 C -0.070 4.070 13 N -0.261 5.261 14 C -0.074 4.074 15 C -0.147 4.147 16 C -0.160 4.160 17 C 0.053 3.947 18 H 0.085 0.915 19 N -0.355 5.355 20 C 0.391 3.609 21 O -0.428 6.428 22 C -0.444 4.444 23 C -0.089 4.089 24 N -0.138 5.138 25 N -0.267 5.267 26 S 0.639 5.361 27 C -0.073 4.073 28 H 0.086 0.914 29 H 0.230 0.770 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.248 0.752 39 H 0.247 0.753 40 H 0.074 0.926 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.056 -17.983 10.065 20.710 hybrid contribution -0.155 0.829 -0.592 1.030 sum 1.901 -17.154 9.473 19.688 Atomic orbital electron populations 1.69657 1.06704 1.29235 1.50525 1.25948 0.96479 1.02167 0.96479 0.85065 0.77821 0.77078 0.78862 1.19979 1.19556 1.19748 1.19574 0.92584 0.84080 1.49748 0.90509 1.41937 1.09294 1.04649 1.65374 1.20863 0.88330 0.85976 0.82098 1.90502 1.15771 1.87816 1.55989 1.21723 0.93177 0.88069 1.04027 1.61255 1.32247 1.02778 1.29858 1.22296 0.95748 0.87063 1.02339 1.21531 0.98022 0.98702 0.96438 1.21932 1.00131 0.95071 0.98868 1.20866 0.94709 0.95960 0.83124 0.91532 1.45762 1.14411 1.63210 1.12158 1.16577 0.81271 0.77712 0.85386 1.90848 1.63374 1.47669 1.40918 1.27936 1.01329 1.13949 1.01224 1.24763 0.95574 0.97200 0.91383 1.70772 1.23427 1.14978 1.04582 1.78667 1.02823 1.17598 1.27640 1.82329 1.20830 1.41717 0.91255 1.22185 0.96147 0.98905 0.90070 0.91368 0.77004 0.86881 0.90912 0.92821 0.89375 0.88188 0.92457 0.91730 0.89731 0.75237 0.75311 0.92566 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.52 13.05 21.66 0.28 -48.24 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.11 16 3 Si 0.99 42.32 29.55 68.60 2.03 44.34 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.33 -18.28 9.68 84.04 0.81 -17.47 16 8 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 9 N -0.57 -28.29 5.29 -306.97 -1.62 -29.91 16 10 C 0.44 19.83 7.31 87.66 0.64 20.47 16 11 O -0.61 -32.77 14.29 -3.09 -0.04 -32.81 16 12 C 0.06 1.90 5.45 85.56 0.47 2.37 16 13 N -0.54 -15.42 4.35 -900.95 -3.92 -19.34 16 14 C 0.05 1.02 5.46 86.33 0.47 1.49 16 15 C -0.11 -1.94 6.09 30.65 0.19 -1.76 16 16 C -0.12 -2.28 5.58 30.67 0.17 -2.11 16 17 C 0.16 3.91 2.62 45.04 0.12 4.03 16 18 H 0.07 2.19 7.58 -2.39 -0.02 2.17 16 19 N -0.70 -14.49 5.08 -445.80 -2.26 -16.75 16 20 C 0.61 14.16 7.77 86.59 0.67 14.83 16 21 O -0.55 -16.86 16.64 -4.08 -0.07 -16.93 16 22 C -0.30 -5.66 6.81 24.62 0.17 -5.49 16 23 C 0.08 1.47 11.55 84.78 0.98 2.44 16 24 N -0.27 -5.90 11.54 -57.87 -0.67 -6.56 16 25 N -0.29 -5.80 12.51 37.02 0.46 -5.33 16 26 S 0.50 7.15 23.05 -56.49 -1.30 5.85 16 27 C 0.06 1.53 4.59 86.33 0.40 1.92 16 28 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 29 H 0.40 18.43 7.90 -92.71 -0.73 17.69 16 30 H 0.11 3.08 7.97 -2.39 -0.02 3.07 16 31 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 32 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.09 1.57 8.01 -2.39 -0.02 1.55 16 34 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.41 6.05 8.03 -92.71 -0.74 5.31 16 39 H 0.23 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 2.26 6.06 -2.39 -0.01 2.24 16 Total: -1.00 -73.44 361.12 -1.94 -75.38 By element: Atomic # 1 Polarization: 30.05 SS G_CDS: -0.38 Total: 29.67 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 5.55 Total: 20.64 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -7.72 Total: -126.14 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -0.11 Total: -49.74 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.30 Total: 5.85 kcal Total: -73.44 -1.94 -75.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317956297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.277 kcal (2) G-P(sol) polarization free energy of solvation -73.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds