Wall clock time and date at job start Tue Mar 31 2020 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31241 * 124.05577 * 2 1 4 4 N 1.27333 * 120.03532 * 180.33772 * 3 2 1 5 5 S 1.56638 * 109.74416 * 359.71607 * 4 3 2 6 6 C 1.38241 * 124.05470 * 179.82152 * 2 1 3 7 7 C 1.47176 * 128.47773 * 0.02562 * 6 2 1 8 8 O 1.21626 * 119.99968 * 359.69695 * 7 6 2 9 9 N 1.34777 * 120.00400 * 179.69599 * 7 6 2 10 10 C 1.46498 * 120.00268 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.89890 * 322.59092 * 10 9 7 12 12 C 1.55137 * 110.98975 * 86.45315 * 10 9 7 13 13 C 1.54318 * 103.17775 * 153.83206 * 12 10 9 14 14 N 1.47442 * 107.22989 * 337.63213 * 13 12 10 15 15 C 1.46903 * 110.99907 * 236.73864 * 14 13 12 16 16 C 1.50701 * 109.47024 * 176.64852 * 15 14 13 17 17 O 1.21287 * 120.00209 * 6.13181 * 16 15 14 18 18 N 1.34781 * 119.99733 * 186.12528 * 16 15 14 19 19 C 1.37095 * 119.99803 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00413 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00058 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00225 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00118 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47542 * 89.99799 * 23 21 19 25 25 H 1.48504 * 109.47550 * 210.00443 * 23 21 19 26 26 H 1.48505 * 109.47056 * 330.00102 * 23 21 19 27 27 C 1.47844 * 108.57052 * 359.00505 * 14 13 12 28 28 H 1.09008 * 109.46947 * 270.17509 * 1 2 3 29 29 H 1.08994 * 109.47098 * 30.17404 * 1 2 3 30 30 H 1.08994 * 109.46804 * 150.17817 * 1 2 3 31 31 H 0.96999 * 119.99611 * 0.02562 * 9 7 6 32 32 H 1.09001 * 110.70753 * 35.36627 * 12 10 9 33 33 H 1.09000 * 110.70829 * 272.30303 * 12 10 9 34 34 H 1.09004 * 109.88791 * 97.03282 * 13 12 10 35 35 H 1.08995 * 109.89035 * 218.23030 * 13 12 10 36 36 H 1.08997 * 109.47244 * 296.65022 * 15 14 13 37 37 H 1.08998 * 109.47192 * 56.65337 * 15 14 13 38 38 H 0.96999 * 119.99933 * 0.02562 * 18 16 15 39 39 H 0.97006 * 120.00244 * 179.97438 * 22 21 19 40 40 H 1.08997 * 110.37528 * 142.92428 * 27 14 13 41 41 H 1.08999 * 110.37704 * 265.16208 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0065 5 16 3.9367 -0.5097 -0.0062 6 6 2.2812 -1.1453 0.0036 7 6 1.8394 -2.5492 0.0074 8 8 0.6522 -2.8131 0.0133 9 7 2.7504 -3.5425 0.0044 10 6 2.3107 -4.9399 0.0088 11 1 1.4255 -5.0670 0.6321 12 6 2.0511 -5.4453 -1.4348 13 6 2.2759 -6.9677 -1.3202 14 7 3.1263 -7.1959 -0.1375 15 6 4.3464 -7.9293 -0.5000 16 6 5.2267 -8.0714 0.7149 17 8 4.8259 -7.7072 1.8002 18 7 6.4593 -8.6034 0.5954 19 6 7.2599 -8.7332 1.7007 20 1 6.9029 -8.4095 2.6672 21 6 8.5309 -9.2811 1.5775 22 7 9.2985 -9.4050 2.6369 23 14 9.1484 -9.8415 -0.0940 24 1 9.8394 -8.7143 -0.7700 25 1 10.0974 -10.9701 0.0817 26 1 7.9990 -10.2859 -0.9228 27 6 3.4546 -5.8867 0.4659 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5110 31 1 3.6973 -3.3320 0.0001 32 1 2.7623 -5.0022 -2.1320 33 1 1.0276 -5.2288 -1.7408 34 1 1.3196 -7.4752 -1.1927 35 1 2.7779 -7.3368 -2.2145 36 1 4.0788 -8.9181 -0.8725 37 1 4.8826 -7.3819 -1.2751 38 1 6.7799 -8.8944 -0.2726 39 1 10.1857 -9.7879 2.5509 40 1 3.4715 -5.9635 1.5530 41 1 4.4157 -5.5289 0.0965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318230824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:41 Heat of formation + Delta-G solvation = 20.477625 kcal Electronic energy + Delta-G solvation = -26383.271379 eV Core-core repulsion = 22426.462098 eV Total energy + Delta-G solvation = -3956.809282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36582 -40.23238 -39.09522 -37.66912 -34.78933 -33.99755 -33.66709 -31.79814 -31.25640 -29.31120 -28.17360 -27.33153 -26.71654 -24.16401 -23.21108 -21.31788 -21.11095 -20.55208 -19.44713 -18.91186 -18.36459 -17.89081 -16.68902 -16.46752 -16.23510 -15.39196 -15.27618 -14.99701 -14.89882 -14.55976 -14.47724 -13.91449 -13.58736 -13.43138 -13.36411 -13.18162 -13.11724 -12.82113 -12.61103 -12.38309 -11.99477 -11.93888 -11.87502 -11.49619 -11.37100 -11.09253 -10.90503 -10.74969 -10.65124 -10.40946 -10.25361 -10.12104 -10.03874 -9.63179 -9.43825 -8.61422 -8.26095 -8.11825 -6.37455 -3.89276 -0.67651 0.40562 1.06322 1.53896 2.53195 2.57904 2.97090 3.00773 3.10222 3.47911 3.65066 3.91681 4.04220 4.14555 4.25912 4.47760 4.53855 4.71866 4.89514 4.93276 5.14171 5.17239 5.22469 5.25311 5.34030 5.42957 5.59410 5.68196 5.70597 5.71765 5.81246 5.85172 5.96108 6.13774 6.31867 6.93487 7.01097 7.05363 7.25243 7.51238 7.65525 8.07097 8.52665 8.88225 9.35237 9.74765 10.75437 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002484 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.243270 B =11268.011011 C =12433.197506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.104 3.896 3 N -0.251 5.251 4 N -0.251 5.251 5 S 0.423 5.577 6 C -0.297 4.297 7 C 0.606 3.394 8 O -0.512 6.512 9 N -0.709 5.709 10 C 0.133 3.867 11 H 0.110 0.890 12 C -0.153 4.153 13 C 0.042 3.958 14 N -0.503 5.503 15 C 0.038 3.962 16 C 0.448 3.552 17 O -0.561 6.561 18 N -0.589 5.589 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.050 3.950 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.401 0.599 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.110 0.890 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.236 14.211 -11.963 22.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.043 4.043 3 N -0.118 5.118 4 N -0.231 5.231 5 S 0.559 5.441 6 C -0.438 4.438 7 C 0.390 3.610 8 O -0.388 6.388 9 N -0.360 5.360 10 C 0.028 3.972 11 H 0.128 0.872 12 C -0.192 4.192 13 C -0.086 4.086 14 N -0.227 5.227 15 C -0.094 4.094 16 C 0.234 3.766 17 O -0.443 6.443 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.519 5.519 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.078 4.078 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.235 0.765 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.128 0.872 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.770 14.995 -10.758 22.443 hybrid contribution 0.560 -0.561 -1.907 2.065 sum -12.210 14.434 -12.665 22.756 Atomic orbital electron populations 1.20550 0.83659 1.05028 1.04527 1.22989 1.00282 0.84979 0.96099 1.70641 0.96903 1.27947 1.16272 1.78887 1.09457 1.15698 1.19103 1.82703 1.09502 1.01472 1.50391 1.27754 0.98299 0.99959 1.17772 1.16384 0.85957 0.81848 0.76839 1.90820 1.15656 1.82994 1.49305 1.45788 1.09377 1.06177 1.74691 1.22429 0.99468 0.78281 0.97056 0.87242 1.23170 1.02952 0.96257 0.96844 1.22869 0.98804 0.94579 0.92385 1.63337 1.16090 1.17876 1.25398 1.22192 0.90795 0.99936 0.96459 1.19628 0.82624 0.84342 0.90036 1.90547 1.73185 1.52591 1.27937 1.42218 1.14160 1.56527 1.09947 1.19419 0.95200 1.39164 0.89640 0.86227 1.25043 0.96055 0.97505 0.97509 1.69619 1.09782 1.44079 1.28451 0.86685 0.79503 0.79483 0.83794 1.19667 1.20122 1.19462 1.23360 0.94678 0.86686 1.03045 0.89157 0.89823 0.87999 0.76463 0.91259 0.90070 0.89890 0.92337 0.88732 0.93363 0.79711 0.91550 0.87230 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.89 36.01 0.36 -0.25 16 2 C 0.10 1.03 7.00 -82.84 -0.58 0.45 16 3 N -0.25 -2.83 11.54 33.42 0.39 -2.44 16 4 N -0.25 -2.72 12.51 60.35 0.75 -1.96 16 5 S 0.42 3.45 23.05 -107.50 -2.48 0.97 16 6 C -0.30 -2.86 6.81 -35.95 -0.24 -3.10 16 7 C 0.61 6.47 7.80 -12.63 -0.10 6.37 16 8 O -0.51 -6.60 14.64 5.25 0.08 -6.52 16 9 N -0.71 -6.89 5.23 -52.65 -0.28 -7.16 16 10 C 0.13 1.48 3.33 -65.54 -0.22 1.26 16 11 H 0.11 1.35 7.73 -51.93 -0.40 0.95 16 12 C -0.15 -1.49 6.62 -24.91 -0.16 -1.66 16 13 C 0.04 0.45 6.90 -2.84 -0.02 0.43 16 14 N -0.50 -7.24 5.07 -232.38 -1.18 -8.42 16 15 C 0.04 0.58 5.07 -4.97 -0.03 0.55 16 16 C 0.45 9.48 7.34 -10.98 -0.08 9.40 16 17 O -0.56 -13.95 13.89 5.55 0.08 -13.87 16 18 N -0.59 -13.28 5.09 -10.96 -0.06 -13.33 16 19 C -0.31 -8.29 10.16 -14.94 -0.15 -8.44 16 20 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.00 13.96 55.50 0.77 -24.23 16 23 Si 0.88 18.63 27.74 -169.99 -4.71 13.92 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.27 -5.18 6.52 56.52 0.37 -4.81 16 27 C 0.05 0.70 4.92 -2.04 -0.01 0.69 16 28 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.85 6.47 -51.93 -0.34 0.52 16 31 H 0.40 3.20 7.96 -40.82 -0.33 2.87 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.55 7.58 -51.93 -0.39 0.16 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 38 H 0.37 7.31 5.76 -40.82 -0.24 7.07 16 39 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.11 1.86 6.94 -51.93 -0.36 1.50 16 41 H 0.05 0.66 7.60 -51.93 -0.39 0.27 16 LS Contribution 357.51 15.07 5.39 5.39 Total: -1.00 -33.05 357.51 -7.54 -40.58 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -4.96 Total: 10.35 kcal Atomic # 6 Polarization: 8.06 SS G_CDS: -1.33 Total: 6.73 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 0.41 Total: -57.55 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.15 Total: -20.40 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -4.71 Total: 13.92 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.48 Total: 0.97 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.05 -7.54 -40.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318230824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.062 kcal (2) G-P(sol) polarization free energy of solvation -33.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds