Wall clock time and date at job start Tue Mar 31 2020 22:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31241 * 124.05577 * 2 1 4 4 N 1.27333 * 120.03532 * 180.33772 * 3 2 1 5 5 S 1.56638 * 109.74416 * 359.71607 * 4 3 2 6 6 C 1.38241 * 124.05470 * 179.82152 * 2 1 3 7 7 C 1.47176 * 128.47773 * 0.02562 * 6 2 1 8 8 O 1.21626 * 119.99968 * 359.69695 * 7 6 2 9 9 N 1.34777 * 120.00400 * 179.69599 * 7 6 2 10 10 C 1.46498 * 120.00268 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.89890 * 322.59092 * 10 9 7 12 12 C 1.55137 * 110.98975 * 86.45315 * 10 9 7 13 13 C 1.54318 * 103.17775 * 153.83206 * 12 10 9 14 14 N 1.47442 * 107.22989 * 337.63213 * 13 12 10 15 15 C 1.46903 * 110.99907 * 236.73864 * 14 13 12 16 16 C 1.50701 * 109.47024 * 176.64852 * 15 14 13 17 17 O 1.21287 * 120.00209 * 6.13181 * 16 15 14 18 18 N 1.34781 * 119.99733 * 186.12528 * 16 15 14 19 19 C 1.37095 * 119.99803 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00413 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00058 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00225 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00118 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47542 * 89.99799 * 23 21 19 25 25 H 1.48504 * 109.47550 * 210.00443 * 23 21 19 26 26 H 1.48505 * 109.47056 * 330.00102 * 23 21 19 27 27 C 1.47844 * 108.57052 * 359.00505 * 14 13 12 28 28 H 1.09008 * 109.46947 * 270.17509 * 1 2 3 29 29 H 1.08994 * 109.47098 * 30.17404 * 1 2 3 30 30 H 1.08994 * 109.46804 * 150.17817 * 1 2 3 31 31 H 0.96999 * 119.99611 * 0.02562 * 9 7 6 32 32 H 1.09001 * 110.70753 * 35.36627 * 12 10 9 33 33 H 1.09000 * 110.70829 * 272.30303 * 12 10 9 34 34 H 1.09004 * 109.88791 * 97.03282 * 13 12 10 35 35 H 1.08995 * 109.89035 * 218.23030 * 13 12 10 36 36 H 1.08997 * 109.47244 * 296.65022 * 15 14 13 37 37 H 1.08998 * 109.47192 * 56.65337 * 15 14 13 38 38 H 0.96999 * 119.99933 * 0.02562 * 18 16 15 39 39 H 0.97006 * 120.00244 * 179.97438 * 22 21 19 40 40 H 1.08997 * 110.37528 * 142.92428 * 27 14 13 41 41 H 1.08999 * 110.37704 * 265.16208 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5122 0.9981 -0.0065 5 16 3.9367 -0.5097 -0.0062 6 6 2.2812 -1.1453 0.0036 7 6 1.8394 -2.5492 0.0074 8 8 0.6522 -2.8131 0.0133 9 7 2.7504 -3.5425 0.0044 10 6 2.3107 -4.9399 0.0088 11 1 1.4255 -5.0670 0.6321 12 6 2.0511 -5.4453 -1.4348 13 6 2.2759 -6.9677 -1.3202 14 7 3.1263 -7.1959 -0.1375 15 6 4.3464 -7.9293 -0.5000 16 6 5.2267 -8.0714 0.7149 17 8 4.8259 -7.7072 1.8002 18 7 6.4593 -8.6034 0.5954 19 6 7.2599 -8.7332 1.7007 20 1 6.9029 -8.4095 2.6672 21 6 8.5309 -9.2811 1.5775 22 7 9.2985 -9.4050 2.6369 23 14 9.1484 -9.8415 -0.0940 24 1 9.8394 -8.7143 -0.7700 25 1 10.0974 -10.9701 0.0817 26 1 7.9990 -10.2859 -0.9228 27 6 3.4546 -5.8867 0.4659 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5165 30 1 -0.3633 -0.8915 -0.5110 31 1 3.6973 -3.3320 0.0001 32 1 2.7623 -5.0022 -2.1320 33 1 1.0276 -5.2288 -1.7408 34 1 1.3196 -7.4752 -1.1927 35 1 2.7779 -7.3368 -2.2145 36 1 4.0788 -8.9181 -0.8725 37 1 4.8826 -7.3819 -1.2751 38 1 6.7799 -8.8944 -0.2726 39 1 10.1857 -9.7879 2.5509 40 1 3.4715 -5.9635 1.5530 41 1 4.4157 -5.5289 0.0965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318230824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:40 Heat of formation + Delta-G solvation = -7.504031 kcal Electronic energy + Delta-G solvation = -26384.484755 eV Core-core repulsion = 22426.462098 eV Total energy + Delta-G solvation = -3958.022657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.13773 -41.20796 -40.40683 -39.00453 -36.05682 -35.58732 -34.40667 -33.73993 -32.33349 -30.14969 -29.12464 -28.17693 -27.98613 -25.80562 -24.06259 -22.33419 -21.95137 -21.49167 -21.19059 -20.17063 -19.61693 -18.74821 -17.81668 -17.52571 -17.24800 -16.76143 -16.56356 -16.22414 -15.94906 -15.76117 -15.37716 -15.16750 -14.73016 -14.58728 -14.39305 -14.17442 -14.13830 -14.00893 -13.95024 -13.51905 -13.26383 -12.97821 -12.81332 -12.61149 -12.44941 -12.38927 -12.28992 -11.97392 -11.77169 -11.55992 -11.46100 -11.21900 -11.01478 -10.84491 -10.37296 -10.25634 -10.20190 -9.23104 -8.39069 -5.99692 -1.43898 -0.31130 0.32825 0.76380 1.32132 1.36877 1.46230 1.68028 1.75743 1.97982 2.24806 2.69691 2.76388 3.17467 3.22874 3.40875 3.45031 3.62457 3.70862 4.05726 4.17945 4.21131 4.27413 4.36681 4.40039 4.56222 4.65522 4.69391 4.75651 4.88787 4.94540 5.06684 5.14666 5.20126 5.31799 5.54768 5.89231 5.97501 6.08801 6.16837 6.50171 6.61975 6.83468 6.91211 7.42459 7.99340 8.78414 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002484 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.243270 B =11268.011011 C =12433.197506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.100 3.900 3 N -0.273 5.273 4 N -0.280 5.280 5 S 0.490 5.510 6 C -0.312 4.312 7 C 0.611 3.389 8 O -0.536 6.536 9 N -0.703 5.703 10 C 0.142 3.858 11 H 0.094 0.906 12 C -0.141 4.141 13 C 0.045 3.955 14 N -0.527 5.527 15 C 0.049 3.951 16 C 0.448 3.552 17 O -0.605 6.605 18 N -0.592 5.592 19 C -0.324 4.324 20 H 0.056 0.944 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.963 3.037 24 H -0.256 1.256 25 H -0.279 1.279 26 H -0.230 1.230 27 C 0.055 3.945 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.409 0.591 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.085 0.915 38 H 0.389 0.611 39 H 0.278 0.722 40 H 0.067 0.933 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 13.945 -16.040 25.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.138 5.138 4 N -0.261 5.261 5 S 0.626 5.374 6 C -0.453 4.453 7 C 0.395 3.605 8 O -0.413 6.413 9 N -0.354 5.354 10 C 0.036 3.964 11 H 0.112 0.888 12 C -0.181 4.181 13 C -0.083 4.083 14 N -0.253 5.253 15 C -0.082 4.082 16 C 0.236 3.764 17 O -0.489 6.489 18 N -0.234 5.234 19 C -0.454 4.454 20 H 0.074 0.926 21 C -0.214 4.214 22 N -0.577 5.577 23 Si 0.783 3.217 24 H -0.181 1.181 25 H -0.204 1.204 26 H -0.153 1.153 27 C -0.073 4.073 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.103 0.897 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.018 14.749 -14.860 24.654 hybrid contribution 0.589 -0.456 -0.480 0.886 sum -12.428 14.293 -15.340 24.374 Atomic orbital electron populations 1.20604 0.82519 1.05419 1.05052 1.23306 1.01159 0.84809 0.95511 1.70691 0.97088 1.28673 1.17383 1.78680 1.09663 1.17738 1.20037 1.82412 1.07574 0.99365 1.48006 1.27700 0.99565 0.99400 1.18643 1.16424 0.85620 0.82190 0.76295 1.90809 1.16640 1.83416 1.50476 1.45684 1.09830 1.05571 1.74325 1.22190 0.97623 0.78436 0.98122 0.88817 1.23111 1.03801 0.95637 0.95503 1.22939 0.98446 0.95204 0.91664 1.63236 1.16158 1.18067 1.27801 1.22151 0.90251 1.02222 0.93551 1.20895 0.82373 0.81611 0.91496 1.90549 1.74074 1.53609 1.30687 1.42043 1.14383 1.57563 1.09371 1.18976 0.96710 1.40564 0.89100 0.92600 1.26102 0.95508 0.96851 1.02985 1.69808 1.10497 1.45405 1.31948 0.85392 0.79791 0.79026 0.77487 1.18068 1.20431 1.15287 1.23112 0.95877 0.87677 1.00675 0.88514 0.88391 0.88542 0.75406 0.89715 0.89414 0.89337 0.89782 0.86034 0.89710 0.77520 0.91247 0.91493 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.89 71.24 0.70 -0.42 16 2 C 0.10 1.92 7.00 42.65 0.30 2.22 16 3 N -0.27 -5.96 11.54 -48.18 -0.56 -6.52 16 4 N -0.28 -5.83 12.51 37.02 0.46 -5.36 16 5 S 0.49 7.28 23.05 -56.49 -1.30 5.98 16 6 C -0.31 -5.68 6.81 24.62 0.17 -5.51 16 7 C 0.61 12.40 7.80 86.59 0.68 13.08 16 8 O -0.54 -13.44 14.64 -4.11 -0.06 -13.50 16 9 N -0.70 -12.76 5.23 -438.72 -2.30 -15.05 16 10 C 0.14 2.99 3.33 46.54 0.16 3.15 16 11 H 0.09 2.31 7.73 -2.39 -0.02 2.29 16 12 C -0.14 -2.30 6.62 31.77 0.21 -2.09 16 13 C 0.04 0.78 6.90 86.65 0.60 1.38 16 14 N -0.53 -14.07 5.07 -889.12 -4.50 -18.57 16 15 C 0.05 1.34 5.07 85.56 0.43 1.77 16 16 C 0.45 18.74 7.34 87.66 0.64 19.38 16 17 O -0.61 -31.32 13.89 -3.05 -0.04 -31.37 16 18 N -0.59 -26.19 5.09 -306.99 -1.56 -27.75 16 19 C -0.32 -18.23 10.16 84.04 0.85 -17.38 16 20 H 0.06 3.77 7.39 -2.91 -0.02 3.75 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 22 N -0.94 -55.19 13.96 21.66 0.30 -54.89 16 23 Si 0.96 37.10 27.74 68.60 1.90 39.00 16 24 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 25 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 27 C 0.06 1.51 4.92 86.94 0.43 1.93 16 28 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.10 1.55 6.47 -2.39 -0.02 1.54 16 31 H 0.41 5.90 7.96 -92.71 -0.74 5.16 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.08 1.10 7.58 -2.39 -0.02 1.08 16 36 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 37 H 0.09 1.76 8.13 -2.39 -0.02 1.74 16 38 H 0.39 14.08 5.76 -92.71 -0.53 13.55 16 39 H 0.28 15.02 8.31 -92.70 -0.77 14.25 16 40 H 0.07 2.40 6.94 -2.39 -0.02 2.38 16 41 H 0.05 1.32 7.60 -2.39 -0.02 1.30 16 Total: -1.00 -77.92 357.51 -2.24 -80.17 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: -0.22 Total: 30.73 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 5.64 Total: 17.13 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -8.15 Total: -128.14 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.10 Total: -44.86 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 1.90 Total: 39.00 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -1.30 Total: 5.98 kcal Total: -77.92 -2.24 -80.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318230824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.664 kcal (2) G-P(sol) polarization free energy of solvation -77.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds