Wall clock time and date at job start Tue Mar 31 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99671 * 2 1 4 4 H 1.48503 * 109.46785 * 240.00135 * 3 2 1 5 5 H 1.48500 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46927 * 120.00456 * 3 2 1 7 7 C 1.37880 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99616 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00102 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99643 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26438 * 12 11 10 14 14 N 1.40079 * 125.97570 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00154 * 0.02562 * 14 13 12 16 16 O 1.21583 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.47655 * 119.99651 * 179.97438 * 15 14 13 18 18 C 1.40234 * 120.49350 * 179.72233 * 17 15 14 19 19 C 1.38041 * 118.35293 * 179.73341 * 18 17 15 20 20 C 1.39142 * 119.25371 * 0.56712 * 19 18 17 21 21 N 1.39542 * 119.52880 * 179.67542 * 20 19 18 22 22 C 1.34876 * 126.85472 * 179.72574 * 21 20 19 23 23 N 1.30793 * 108.01149 * 179.86905 * 22 21 20 24 24 C 1.33323 * 109.84771 * 0.41156 * 23 22 21 25 25 N 1.30696 * 109.02863 * 359.74257 * 24 23 22 26 26 N 1.32440 * 120.94775 * 359.69005 * 20 19 18 27 27 C 1.31621 * 121.80231 * 0.02562 * 26 20 19 28 28 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 29 29 H 0.97003 * 120.00388 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47687 * 59.99869 * 9 7 2 31 31 H 1.09002 * 109.47016 * 300.00065 * 9 7 2 32 32 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 33 33 H 1.08002 * 126.06677 * 180.24590 * 12 11 10 34 34 H 0.97007 * 120.00054 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.82452 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.36981 * 180.23331 * 19 18 17 37 37 H 1.07998 * 125.99464 * 0.02893 * 22 21 20 38 38 H 1.07998 * 125.48656 * 179.76831 * 24 23 22 39 39 H 1.08003 * 119.68359 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2570 -5.4458 0.5464 13 6 3.8668 -4.9167 -0.6026 14 7 4.9595 -5.4693 -1.2829 15 6 5.5195 -6.6131 -0.8419 16 8 5.0760 -7.1656 0.1462 17 6 6.6710 -7.1958 -1.5594 18 6 7.2654 -8.3824 -1.1063 19 6 8.3359 -8.8911 -1.8139 20 6 8.7941 -8.2095 -2.9371 21 7 9.8802 -8.7150 -3.6527 22 6 10.4393 -8.1818 -4.7583 23 7 11.4321 -8.9521 -5.1211 24 6 11.5330 -9.9849 -4.2841 25 7 10.6053 -9.8840 -3.3690 26 7 8.2144 -7.0878 -3.3366 27 6 7.1880 -6.5707 -2.6950 28 7 3.2338 -3.8139 -0.9275 29 1 -0.4851 0.8400 0.0004 30 1 0.6240 -2.5568 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.5777 -4.7525 1.7356 33 1 3.5472 -6.3498 1.0611 34 1 5.3127 -5.0291 -2.0719 35 1 6.8923 -8.8878 -0.2278 36 1 8.8158 -9.8049 -1.4961 37 1 10.1242 -7.2762 -5.2552 38 1 12.2638 -10.7772 -4.3512 39 1 6.7417 -5.6538 -3.0507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318668397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:51 Heat of formation + Delta-G solvation = 197.682784 kcal Electronic energy + Delta-G solvation = -26503.914124 eV Core-core repulsion = 22451.637834 eV Total energy + Delta-G solvation = -4052.276289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.90106 -41.24704 -40.51795 -39.11397 -35.09806 -34.84332 -33.44686 -33.27997 -31.83573 -31.43512 -30.39835 -29.42027 -26.90080 -25.67561 -24.71648 -23.43468 -22.69771 -22.10423 -21.68224 -20.50168 -19.81393 -19.27206 -17.87643 -17.26650 -16.64272 -16.59864 -16.47174 -16.02730 -15.49057 -15.38857 -15.21655 -14.77526 -14.63211 -14.46615 -14.24420 -13.87136 -13.75524 -13.46663 -12.84152 -12.79193 -12.42506 -12.32335 -11.89065 -11.51741 -11.13076 -10.92113 -10.76439 -10.64780 -10.60134 -10.53062 -10.46401 -10.30592 -10.13109 -9.79682 -9.59057 -9.27772 -8.67532 -8.25571 -7.59313 -6.28878 -4.34376 -0.33270 0.52450 1.14364 1.33526 2.25874 2.37213 2.50899 2.79422 3.19404 3.22435 3.26176 3.30093 3.48565 3.65881 3.69130 3.76996 3.83266 4.10850 4.23119 4.28141 4.40933 4.54027 4.62519 4.98340 5.06320 5.18845 5.35479 5.47561 5.53669 5.65729 5.70213 5.79048 6.09883 6.26342 6.36834 6.45364 6.77839 6.89248 6.98632 7.22225 7.41404 7.44695 7.64739 7.81730 7.94975 7.97439 8.51361 8.73857 9.31488 10.79799 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.001902 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.277295 B =14715.016224 C =15826.518942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.531 4.531 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.315 5.315 11 C 0.053 3.947 12 C -0.286 4.286 13 C 0.254 3.746 14 N -0.622 5.622 15 C 0.571 3.429 16 O -0.507 6.507 17 C -0.184 4.184 18 C 0.010 3.990 19 C -0.162 4.162 20 C 0.381 3.619 21 N -0.337 5.337 22 C 0.296 3.704 23 N -0.539 5.539 24 C 0.217 3.783 25 N -0.308 5.308 26 N -0.502 5.502 27 C 0.173 3.827 28 N -0.300 5.300 29 H 0.268 0.732 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.410 0.590 35 H 0.163 0.837 36 H 0.158 0.842 37 H 0.231 0.769 38 H 0.228 0.772 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.498 -18.562 -5.880 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.097 5.097 11 C -0.097 4.097 12 C -0.317 4.317 13 C 0.001 3.999 14 N -0.269 5.269 15 C 0.356 3.644 16 O -0.381 6.381 17 C -0.190 4.190 18 C -0.016 4.016 19 C -0.184 4.184 20 C 0.153 3.847 21 N -0.122 5.122 22 C 0.001 3.999 23 N -0.264 5.264 24 C -0.085 4.085 25 N -0.133 5.133 26 N -0.215 5.215 27 C 0.013 3.987 28 N -0.131 5.131 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.187 0.813 33 H 0.178 0.822 34 H 0.246 0.754 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.247 0.753 38 H 0.244 0.756 39 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 17.310 -17.816 -6.429 25.659 hybrid contribution 0.181 0.397 0.745 0.863 sum 17.492 -17.419 -5.684 25.332 Atomic orbital electron populations 1.69905 1.06040 1.27808 1.49489 1.24944 0.94993 0.99561 0.94526 0.86378 0.79383 0.81752 0.78936 1.19907 1.21025 1.20042 1.21200 0.93949 0.89347 1.52427 0.91329 1.19781 0.85567 0.81231 0.99390 1.49125 1.22898 1.19712 1.17997 1.22585 1.00274 0.90108 0.96728 1.21515 1.02257 1.06320 1.01621 1.19001 0.91494 0.94517 0.94899 1.42234 1.30121 1.24266 1.30300 1.17687 0.82413 0.80073 0.84217 1.90754 1.61900 1.60279 1.25146 1.20929 0.99773 0.99013 0.99300 1.21702 0.90625 0.91799 0.97507 1.21655 0.98793 1.02800 0.95179 1.17867 0.86448 0.90640 0.89706 1.47516 1.23880 1.19051 1.21792 1.26549 0.88813 0.98834 0.85744 1.70766 1.19768 1.06222 1.29684 1.26348 0.96510 0.97262 0.88423 1.78199 1.09759 1.00587 1.24802 1.66838 1.11266 1.10530 1.32850 1.22812 0.88926 0.97599 0.89360 1.77346 1.03502 1.15925 1.16332 0.92219 0.93595 0.92440 0.81332 0.82211 0.75367 0.81921 0.82456 0.75333 0.75581 0.80667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 13.29 55.43 0.74 -24.01 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.53 -14.34 9.23 -34.44 -0.32 -14.66 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.26 6.31 6.26 -5.20 -0.03 6.28 16 10 N -0.32 -6.98 3.67 -62.56 -0.23 -7.21 16 11 C 0.05 1.00 11.43 -17.24 -0.20 0.80 16 12 C -0.29 -5.27 9.60 -39.83 -0.38 -5.65 16 13 C 0.25 4.70 8.11 -154.45 -1.25 3.45 16 14 N -0.62 -8.48 5.40 -12.04 -0.07 -8.54 16 15 C 0.57 7.20 7.74 -12.41 -0.10 7.10 16 16 O -0.51 -7.81 13.54 5.29 0.07 -7.74 16 17 C -0.18 -1.69 5.89 -104.81 -0.62 -2.31 16 18 C 0.01 0.08 9.70 -38.90 -0.38 -0.29 16 19 C -0.16 -1.28 9.70 -39.32 -0.38 -1.66 16 20 C 0.38 3.40 7.56 -154.45 -1.17 2.23 16 21 N -0.34 -3.04 3.80 -13.32 -0.05 -3.09 16 22 C 0.30 2.36 12.25 -90.28 -1.11 1.25 16 23 N -0.54 -4.70 11.19 -15.72 -0.18 -4.88 16 24 C 0.22 1.59 13.03 -91.75 -1.20 0.40 16 25 N -0.31 -2.76 11.99 29.30 0.35 -2.41 16 26 N -0.50 -4.29 9.86 -11.98 -0.12 -4.41 16 27 C 0.17 1.35 10.71 -17.15 -0.18 1.17 16 28 N -0.30 -6.50 12.42 31.43 0.39 -6.11 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 32 H 0.17 2.56 8.06 -52.49 -0.42 2.14 16 33 H 0.16 2.82 5.91 -52.49 -0.31 2.51 16 34 H 0.41 4.28 6.88 -40.82 -0.28 4.00 16 35 H 0.16 1.16 7.73 -52.49 -0.41 0.76 16 36 H 0.16 1.08 7.71 -52.49 -0.40 0.68 16 37 H 0.23 1.16 8.06 -52.49 -0.42 0.74 16 38 H 0.23 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.18 0.94 6.41 -52.48 -0.34 0.60 16 LS Contribution 353.83 15.07 5.33 5.33 Total: -1.00 -34.03 353.83 -9.57 -43.61 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -3.39 Total: 3.89 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -7.40 Total: -0.30 kcal Atomic # 7 Polarization: -61.50 SS G_CDS: 0.84 Total: -60.66 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.03 -9.57 -43.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318668397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.292 kcal (2) G-P(sol) polarization free energy of solvation -34.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds