Wall clock time and date at job start Tue Mar 31 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99671 * 2 1 4 4 H 1.48503 * 109.46785 * 240.00135 * 3 2 1 5 5 H 1.48500 * 109.47269 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46927 * 120.00456 * 3 2 1 7 7 C 1.37880 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99616 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00102 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.34964 * 125.97659 * 124.99643 * 10 9 7 12 12 C 1.35237 * 107.86287 * 179.73677 * 11 10 9 13 13 C 1.40426 * 107.86928 * 0.26438 * 12 11 10 14 14 N 1.40079 * 125.97570 * 179.97438 * 13 12 11 15 15 C 1.34778 * 120.00154 * 0.02562 * 14 13 12 16 16 O 1.21583 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.47655 * 119.99651 * 179.97438 * 15 14 13 18 18 C 1.40234 * 120.49350 * 179.72233 * 17 15 14 19 19 C 1.38041 * 118.35293 * 179.73341 * 18 17 15 20 20 C 1.39142 * 119.25371 * 0.56712 * 19 18 17 21 21 N 1.39542 * 119.52880 * 179.67542 * 20 19 18 22 22 C 1.34876 * 126.85472 * 179.72574 * 21 20 19 23 23 N 1.30793 * 108.01149 * 179.86905 * 22 21 20 24 24 C 1.33323 * 109.84771 * 0.41156 * 23 22 21 25 25 N 1.30696 * 109.02863 * 359.74257 * 24 23 22 26 26 N 1.32440 * 120.94775 * 359.69005 * 20 19 18 27 27 C 1.31621 * 121.80231 * 0.02562 * 26 20 19 28 28 N 1.31233 * 108.04440 * 359.97438 * 13 12 11 29 29 H 0.97003 * 120.00388 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47687 * 59.99869 * 9 7 2 31 31 H 1.09002 * 109.47016 * 300.00065 * 9 7 2 32 32 H 1.08002 * 126.07135 * 0.02562 * 11 10 9 33 33 H 1.08002 * 126.06677 * 180.24590 * 12 11 10 34 34 H 0.97007 * 120.00054 * 179.97438 * 14 13 12 35 35 H 1.08000 * 120.82452 * 359.97438 * 18 17 15 36 36 H 1.08000 * 120.36981 * 180.23331 * 19 18 17 37 37 H 1.07998 * 125.99464 * 0.02893 * 22 21 20 38 38 H 1.07998 * 125.48656 * 179.76831 * 24 23 22 39 39 H 1.08003 * 119.68359 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2570 -5.4458 0.5464 13 6 3.8668 -4.9167 -0.6026 14 7 4.9595 -5.4693 -1.2829 15 6 5.5195 -6.6131 -0.8419 16 8 5.0760 -7.1656 0.1462 17 6 6.6710 -7.1958 -1.5594 18 6 7.2654 -8.3824 -1.1063 19 6 8.3359 -8.8911 -1.8139 20 6 8.7941 -8.2095 -2.9371 21 7 9.8802 -8.7150 -3.6527 22 6 10.4393 -8.1818 -4.7583 23 7 11.4321 -8.9521 -5.1211 24 6 11.5330 -9.9849 -4.2841 25 7 10.6053 -9.8840 -3.3690 26 7 8.2144 -7.0878 -3.3366 27 6 7.1880 -6.5707 -2.6950 28 7 3.2338 -3.8139 -0.9275 29 1 -0.4851 0.8400 0.0004 30 1 0.6240 -2.5568 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 1.5777 -4.7525 1.7356 33 1 3.5472 -6.3498 1.0611 34 1 5.3127 -5.0291 -2.0719 35 1 6.8923 -8.8878 -0.2278 36 1 8.8158 -9.8049 -1.4961 37 1 10.1242 -7.2762 -5.2552 38 1 12.2638 -10.7772 -4.3512 39 1 6.7417 -5.6538 -3.0507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318668397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:51 Heat of formation + Delta-G solvation = 178.669330 kcal Electronic energy + Delta-G solvation = -26504.738609 eV Core-core repulsion = 22451.637834 eV Total energy + Delta-G solvation = -4053.100775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.49926 -42.35287 -41.61042 -40.18972 -36.37069 -35.60894 -35.23719 -33.95028 -32.95391 -32.42412 -31.38850 -30.91334 -28.60818 -26.57291 -25.35980 -24.96930 -23.73249 -22.70939 -22.68729 -21.92484 -21.07987 -19.90641 -18.92567 -18.67472 -18.22463 -17.66938 -17.23435 -16.90505 -16.60281 -16.58238 -16.22612 -15.97900 -15.62243 -15.46995 -15.16916 -14.96861 -14.61487 -14.45255 -14.21865 -14.02423 -13.80136 -13.66491 -13.39886 -12.94055 -12.71728 -12.28233 -12.20291 -12.08395 -11.70353 -11.44800 -11.36992 -11.29048 -11.26260 -11.07834 -10.85523 -10.70675 -9.96529 -9.75987 -9.13393 -8.31859 -6.45694 -1.02671 -0.09269 0.48078 0.73563 1.05861 1.27109 1.39989 1.41440 1.49849 1.53479 1.78320 2.16162 2.24781 2.39375 2.59237 2.88023 3.00340 3.19835 3.31560 3.34140 3.56024 3.67983 3.94238 4.00216 4.05232 4.26496 4.42153 4.58086 4.71478 4.78041 4.90364 4.93529 4.94413 5.04047 5.08752 5.13852 5.26003 5.57724 5.66294 5.80820 5.89080 6.16718 6.25625 6.28748 6.65507 6.85283 6.88105 7.05166 7.24214 8.75494 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.020399 B = 0.001902 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.277295 B =14715.016224 C =15826.518942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.272 3.728 10 N -0.342 5.342 11 C 0.056 3.944 12 C -0.292 4.292 13 C 0.265 3.735 14 N -0.616 5.616 15 C 0.578 3.422 16 O -0.534 6.534 17 C -0.192 4.192 18 C 0.018 3.982 19 C -0.161 4.161 20 C 0.376 3.624 21 N -0.348 5.348 22 C 0.296 3.704 23 N -0.559 5.559 24 C 0.220 3.780 25 N -0.331 5.331 26 N -0.507 5.507 27 C 0.183 3.817 28 N -0.341 5.341 29 H 0.272 0.728 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.201 0.799 33 H 0.171 0.829 34 H 0.424 0.576 35 H 0.172 0.828 36 H 0.167 0.833 37 H 0.252 0.748 38 H 0.262 0.738 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.171 -19.078 -6.158 27.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.794 3.206 4 H -0.197 1.197 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.072 0.928 9 C 0.153 3.847 10 N -0.124 5.124 11 C -0.092 4.092 12 C -0.322 4.322 13 C 0.010 3.990 14 N -0.266 5.266 15 C 0.366 3.634 16 O -0.410 6.410 17 C -0.199 4.199 18 C -0.008 4.008 19 C -0.183 4.183 20 C 0.149 3.851 21 N -0.133 5.133 22 C 0.001 3.999 23 N -0.285 5.285 24 C -0.081 4.081 25 N -0.156 5.156 26 N -0.219 5.219 27 C 0.023 3.977 28 N -0.172 5.172 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.218 0.782 33 H 0.188 0.812 34 H 0.264 0.736 35 H 0.189 0.811 36 H 0.184 0.816 37 H 0.267 0.733 38 H 0.277 0.723 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 19.015 -18.361 -6.725 27.275 hybrid contribution -0.213 0.389 0.784 0.901 sum 18.802 -17.972 -5.941 26.680 Atomic orbital electron populations 1.69986 1.07200 1.28790 1.49895 1.25726 0.95822 1.02687 0.93946 0.85421 0.78284 0.77933 0.78928 1.19739 1.20009 1.19539 1.21374 0.93439 0.90916 1.52839 0.92774 1.19349 0.85670 0.81488 0.98186 1.48848 1.23653 1.20323 1.19601 1.23186 1.00525 0.88817 0.96676 1.21735 1.02200 1.06550 1.01755 1.19323 0.91650 0.93331 0.94653 1.42321 1.28983 1.24638 1.30638 1.18118 0.82481 0.79126 0.83714 1.90730 1.62892 1.60899 1.26511 1.20630 0.99261 0.99853 1.00106 1.21807 0.90230 0.91247 0.97524 1.21713 0.98649 1.03066 0.94888 1.18106 0.86391 0.90745 0.89853 1.47606 1.24117 1.19369 1.22197 1.27056 0.88360 0.99191 0.85342 1.70810 1.20333 1.06940 1.30376 1.27089 0.96334 0.97396 0.87328 1.78176 1.10533 1.01050 1.25838 1.66922 1.11475 1.10595 1.32951 1.23138 0.88254 0.97850 0.88437 1.77263 1.04582 1.17858 1.17489 0.91887 0.95948 0.92358 0.78229 0.81204 0.73630 0.81088 0.81562 0.73260 0.72278 0.78420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.23 13.29 21.45 0.28 -50.94 16 2 C 0.02 1.01 5.46 84.65 0.46 1.47 16 3 Si 0.97 42.67 29.54 68.60 2.03 44.69 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -30.06 9.23 25.60 0.24 -29.82 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.27 13.66 6.26 85.63 0.54 14.20 16 10 N -0.34 -15.35 3.67 -351.85 -1.29 -16.64 16 11 C 0.06 2.10 11.43 83.52 0.96 3.05 16 12 C -0.29 -10.53 9.60 22.11 0.21 -10.32 16 13 C 0.26 9.69 8.11 133.35 1.08 10.77 16 14 N -0.62 -16.11 5.40 -310.28 -1.68 -17.78 16 15 C 0.58 13.81 7.74 86.73 0.67 14.48 16 16 O -0.53 -15.88 13.54 -3.98 -0.05 -15.93 16 17 C -0.19 -3.22 5.89 -19.99 -0.12 -3.34 16 18 C 0.02 0.27 9.70 22.71 0.22 0.49 16 19 C -0.16 -2.29 9.70 22.44 0.22 -2.07 16 20 C 0.38 6.10 7.56 132.87 1.00 7.11 16 21 N -0.35 -5.76 3.80 -196.07 -0.75 -6.51 16 22 C 0.30 4.25 12.25 180.23 2.21 6.46 16 23 N -0.56 -8.89 11.19 -203.65 -2.28 -11.17 16 24 C 0.22 2.86 13.03 180.74 2.35 5.21 16 25 N -0.33 -5.46 11.99 -61.21 -0.73 -6.19 16 26 N -0.51 -7.68 9.86 -191.81 -1.89 -9.57 16 27 C 0.18 2.50 10.71 85.04 0.91 3.41 16 28 N -0.34 -14.91 12.42 -54.48 -0.68 -15.59 16 29 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.87 8.07 -2.39 -0.02 2.85 16 32 H 0.20 5.82 8.06 -2.91 -0.02 5.79 16 33 H 0.17 5.81 5.91 -2.91 -0.02 5.79 16 34 H 0.42 8.27 6.88 -92.70 -0.64 7.63 16 35 H 0.17 2.19 7.73 -2.91 -0.02 2.16 16 36 H 0.17 2.04 7.71 -2.91 -0.02 2.02 16 37 H 0.25 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.26 1.02 8.06 -2.91 -0.02 1.00 16 39 H 0.20 1.64 6.41 -2.91 -0.02 1.62 16 Total: -1.00 -73.18 353.83 4.42 -68.76 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.50 Total: 15.76 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: 10.95 Total: 21.11 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -9.01 Total: -134.39 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.05 Total: -15.93 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -73.18 4.42 -68.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318668397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.428 kcal (2) G-P(sol) polarization free energy of solvation -73.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds