Wall clock time and date at job start Tue Mar 31 2020 22:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86805 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46827 * 299.99820 * 3 2 1 6 6 H 1.48498 * 109.47208 * 59.99629 * 3 2 1 7 7 C 1.38948 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99634 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00159 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99962 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00434 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99979 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47099 * 185.26005 * 14 13 12 16 16 H 1.08996 * 109.87917 * 302.98473 * 15 14 13 17 17 C 1.54326 * 109.87708 * 64.00458 * 15 14 13 18 18 C 1.55156 * 102.94189 * 141.60925 * 17 15 14 19 19 C 1.54906 * 101.58240 * 324.49621 * 18 17 15 20 20 N 1.47020 * 109.88151 * 181.80506 * 15 14 13 21 21 C 1.34778 * 125.64512 * 61.60429 * 20 15 14 22 22 O 1.21562 * 120.00309 * 5.10576 * 21 20 15 23 23 C 1.47758 * 120.00023 * 185.10694 * 21 20 15 24 24 C 1.39351 * 124.11644 * 179.71850 * 23 21 20 25 25 N 1.30092 * 112.14368 * 179.84823 * 24 23 21 26 26 S 1.55925 * 108.75505 * 0.40614 * 25 24 23 27 27 N 1.31491 * 124.11501 * 0.02992 * 23 21 20 28 28 H 0.96992 * 120.00143 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00221 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47177 * 59.99253 * 12 10 9 31 31 H 1.09000 * 109.47197 * 300.00215 * 12 10 9 32 32 H 1.00893 * 111.00569 * 303.95289 * 13 12 10 33 33 H 1.09007 * 109.47199 * 65.26695 * 14 13 12 34 34 H 1.08994 * 109.47761 * 305.26661 * 14 13 12 35 35 H 1.09005 * 110.71639 * 259.96944 * 17 15 14 36 36 H 1.08995 * 110.72308 * 23.24052 * 17 15 14 37 37 H 1.09006 * 111.00409 * 82.57013 * 18 17 15 38 38 H 1.09001 * 111.00486 * 206.37909 * 18 17 15 39 39 H 1.08998 * 110.37087 * 155.84870 * 19 18 17 40 40 H 1.09006 * 110.36751 * 278.05938 * 19 18 17 41 41 H 1.07994 * 123.92665 * 0.02607 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5578 0.0010 12 6 1.2441 -4.8629 0.0000 13 7 2.1987 -5.9794 -0.0005 14 6 1.4984 -7.2708 -0.0005 15 6 2.5181 -8.4038 0.1312 16 1 3.2477 -8.3416 -0.6761 17 6 3.2346 -8.3091 1.4948 18 6 3.3782 -9.7955 1.9159 19 6 2.0643 -10.4032 1.3647 20 7 1.8305 -9.7027 0.0889 21 6 1.1057 -10.1744 -0.9449 22 8 1.0549 -9.5499 -1.9867 23 6 0.3729 -11.4505 -0.8121 24 6 -0.4053 -12.0137 -1.8216 25 7 -0.9426 -13.1405 -1.4557 26 16 -0.5160 -13.4459 0.0127 27 7 0.3709 -12.1900 0.2751 28 1 -0.4850 0.8400 -0.0004 29 1 0.3536 -2.3907 0.0005 30 1 0.6176 -4.9205 -0.8902 31 1 0.6170 -4.9209 0.8897 32 1 2.8335 -5.9121 -0.7818 33 1 0.9469 -7.3851 -0.9338 34 1 0.8039 -7.3075 0.8387 35 1 4.2139 -7.8432 1.3842 36 1 2.6249 -7.7617 2.2136 37 1 4.2482 -10.2528 1.4444 38 1 3.4289 -9.8911 3.0005 39 1 2.1836 -11.4731 1.1938 40 1 1.2420 -10.2197 2.0564 41 1 -0.5438 -11.5680 -2.7955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319056581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:41 Heat of formation + Delta-G solvation = 3.619055 kcal Electronic energy + Delta-G solvation = -26262.970260 eV Core-core repulsion = 22305.429936 eV Total energy + Delta-G solvation = -3957.540324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.59514 -39.95818 -38.25597 -37.65877 -35.28573 -34.13626 -33.77596 -31.76056 -31.22186 -30.25160 -27.86216 -26.78884 -24.95548 -24.21364 -22.94871 -22.25424 -21.06221 -19.83610 -19.71134 -19.08411 -17.87337 -17.41591 -16.94641 -16.40592 -16.15947 -15.69221 -15.42213 -15.22435 -14.56930 -14.43035 -14.29832 -13.85613 -13.68420 -13.51393 -13.35399 -12.98139 -12.64958 -12.43909 -12.23323 -11.91235 -11.72740 -11.69946 -11.59984 -11.56491 -11.47716 -11.08544 -11.00578 -10.86798 -10.81569 -10.37332 -10.32608 -10.20324 -9.67478 -9.49722 -8.95384 -8.41761 -8.02904 -7.93316 -6.39494 -3.80210 -0.03258 0.92748 1.12515 1.16930 2.53648 2.76032 3.18027 3.28360 3.35797 3.89277 3.93969 4.14463 4.19978 4.34467 4.49150 4.61622 4.66787 4.79286 4.99311 5.05324 5.15529 5.20649 5.26493 5.34367 5.51070 5.61031 5.65592 5.74577 5.82823 5.85810 5.92635 5.97722 6.01929 6.17468 6.22071 6.30523 7.10585 7.21992 7.57599 7.65221 7.72852 8.08916 8.63721 9.20246 9.56996 10.08347 10.78409 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.001973 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.974806 B =14187.698816 C =14872.330058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.565 5.565 10 C 0.443 3.557 11 O -0.583 6.583 12 C 0.052 3.948 13 N -0.663 5.663 14 C 0.049 3.951 15 C 0.142 3.858 16 H 0.082 0.918 17 C -0.111 4.111 18 C -0.140 4.140 19 C 0.107 3.893 20 N -0.594 5.594 21 C 0.615 3.385 22 O -0.518 6.518 23 C 0.018 3.982 24 C 0.091 3.909 25 N -0.576 5.576 26 S 0.709 5.291 27 N -0.541 5.541 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.350 0.650 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -29.008 2.998 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.228 3.772 11 O -0.467 6.467 12 C -0.080 4.080 13 N -0.296 5.296 14 C -0.082 4.082 15 C 0.039 3.961 16 H 0.100 0.900 17 C -0.149 4.149 18 C -0.178 4.178 19 C -0.016 4.016 20 N -0.327 5.327 21 C 0.397 3.603 22 O -0.393 6.393 23 C -0.158 4.158 24 C -0.102 4.102 25 N -0.417 5.417 26 S 0.751 5.249 27 N -0.391 5.391 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.170 0.830 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.540 -30.167 4.274 30.507 hybrid contribution -0.371 2.191 -1.980 2.976 sum -1.911 -27.976 2.294 28.135 Atomic orbital electron populations 1.69623 1.05938 1.28022 1.50785 1.25273 0.95644 0.99739 0.97415 0.85797 0.79707 0.81142 0.77671 1.19211 1.20790 1.20775 1.19753 0.93395 0.82214 1.47358 0.87850 1.41869 1.09218 1.04617 1.64434 1.19790 0.88368 0.84686 0.84360 1.90519 1.13725 1.87082 1.55367 1.21648 0.94322 0.90823 1.01238 1.59977 1.18806 0.99505 1.51291 1.22249 0.95699 0.89027 1.01179 1.21605 0.93743 0.81066 0.99650 0.90032 1.22584 1.01922 0.95519 0.94909 1.22898 0.96930 0.96412 1.01553 1.22488 0.97441 0.97518 0.84181 1.48292 1.49636 1.19094 1.15642 1.16363 0.78669 0.82248 0.83007 1.90869 1.62994 1.58200 1.27276 1.22489 1.04151 0.99482 0.89631 1.23800 0.93938 0.89773 1.02726 1.72277 1.29031 1.20817 1.19551 1.79147 1.25098 1.18952 1.01694 1.72719 1.23832 1.11822 1.30720 0.91950 0.77466 0.93811 0.89683 0.83040 0.94104 0.91054 0.89240 0.89722 0.90773 0.89664 0.89272 0.91081 0.76852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 8 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 9 N -0.56 -14.53 5.29 -10.97 -0.06 -14.59 16 10 C 0.44 10.59 7.82 -10.99 -0.09 10.50 16 11 O -0.58 -15.89 15.78 5.54 0.09 -15.80 16 12 C 0.05 0.95 6.16 -4.98 -0.03 0.92 16 13 N -0.66 -10.86 5.82 -115.06 -0.67 -11.53 16 14 C 0.05 0.67 5.04 -3.82 -0.02 0.65 16 15 C 0.14 1.66 3.09 -66.95 -0.21 1.45 16 16 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.11 -1.11 6.21 -24.90 -0.15 -1.27 16 18 C -0.14 -1.05 7.08 -24.59 -0.17 -1.22 16 19 C 0.11 0.89 5.90 -2.53 -0.01 0.87 16 20 N -0.59 -6.42 3.06 -164.15 -0.50 -6.93 16 21 C 0.61 7.33 7.59 -12.37 -0.09 7.24 16 22 O -0.52 -7.59 16.00 5.31 0.08 -7.51 16 23 C 0.02 0.17 6.70 -83.71 -0.56 -0.39 16 24 C 0.09 0.79 11.22 -17.87 -0.20 0.59 16 25 N -0.58 -4.81 11.41 19.43 0.22 -4.59 16 26 S 0.71 4.23 23.69 -107.50 -2.55 1.69 16 27 N -0.54 -4.43 8.44 23.18 0.20 -4.23 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.39 9.68 7.90 -40.82 -0.32 9.35 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 32 H 0.35 6.02 8.49 -39.30 -0.33 5.68 16 33 H 0.04 0.61 6.96 -51.93 -0.36 0.25 16 34 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 0.91 7.82 -51.93 -0.41 0.51 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.70 6.43 -51.93 -0.33 0.37 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.22 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -33.38 361.60 -8.89 -42.27 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.07 Total: 12.39 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -1.78 Total: 11.28 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -0.09 Total: -65.98 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.17 Total: -23.31 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.55 Total: 1.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.38 -8.89 -42.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319056581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.888 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds