Wall clock time and date at job start Tue Mar 31 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86805 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47133 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46827 * 299.99820 * 3 2 1 6 6 H 1.48498 * 109.47208 * 59.99629 * 3 2 1 7 7 C 1.38948 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99634 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00239 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00159 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99962 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00434 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47408 * 179.97438 * 12 10 9 14 14 C 1.46901 * 110.99979 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47099 * 185.26005 * 14 13 12 16 16 H 1.08996 * 109.87917 * 302.98473 * 15 14 13 17 17 C 1.54326 * 109.87708 * 64.00458 * 15 14 13 18 18 C 1.55156 * 102.94189 * 141.60925 * 17 15 14 19 19 C 1.54906 * 101.58240 * 324.49621 * 18 17 15 20 20 N 1.47020 * 109.88151 * 181.80506 * 15 14 13 21 21 C 1.34778 * 125.64512 * 61.60429 * 20 15 14 22 22 O 1.21562 * 120.00309 * 5.10576 * 21 20 15 23 23 C 1.47758 * 120.00023 * 185.10694 * 21 20 15 24 24 C 1.39351 * 124.11644 * 179.71850 * 23 21 20 25 25 N 1.30092 * 112.14368 * 179.84823 * 24 23 21 26 26 S 1.55925 * 108.75505 * 0.40614 * 25 24 23 27 27 N 1.31491 * 124.11501 * 0.02992 * 23 21 20 28 28 H 0.96992 * 120.00143 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00221 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.47177 * 59.99253 * 12 10 9 31 31 H 1.09000 * 109.47197 * 300.00215 * 12 10 9 32 32 H 1.00893 * 111.00569 * 303.95289 * 13 12 10 33 33 H 1.09007 * 109.47199 * 65.26695 * 14 13 12 34 34 H 1.08994 * 109.47761 * 305.26661 * 14 13 12 35 35 H 1.09005 * 110.71639 * 259.96944 * 17 15 14 36 36 H 1.08995 * 110.72308 * 23.24052 * 17 15 14 37 37 H 1.09006 * 111.00409 * 82.57013 * 18 17 15 38 38 H 1.09001 * 111.00486 * 206.37909 * 18 17 15 39 39 H 1.08998 * 110.37087 * 155.84870 * 19 18 17 40 40 H 1.09006 * 110.36751 * 278.05938 * 19 18 17 41 41 H 1.07994 * 123.92665 * 0.02607 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3465 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8893 2.3966 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0890 -1.2033 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9974 -3.5578 0.0005 11 8 3.2104 -3.5578 0.0010 12 6 1.2441 -4.8629 0.0000 13 7 2.1987 -5.9794 -0.0005 14 6 1.4984 -7.2708 -0.0005 15 6 2.5181 -8.4038 0.1312 16 1 3.2477 -8.3416 -0.6761 17 6 3.2346 -8.3091 1.4948 18 6 3.3782 -9.7955 1.9159 19 6 2.0643 -10.4032 1.3647 20 7 1.8305 -9.7027 0.0889 21 6 1.1057 -10.1744 -0.9449 22 8 1.0549 -9.5499 -1.9867 23 6 0.3729 -11.4505 -0.8121 24 6 -0.4053 -12.0137 -1.8216 25 7 -0.9426 -13.1405 -1.4557 26 16 -0.5160 -13.4459 0.0127 27 7 0.3709 -12.1900 0.2751 28 1 -0.4850 0.8400 -0.0004 29 1 0.3536 -2.3907 0.0005 30 1 0.6176 -4.9205 -0.8902 31 1 0.6170 -4.9209 0.8897 32 1 2.8335 -5.9121 -0.7818 33 1 0.9469 -7.3851 -0.9338 34 1 0.8039 -7.3075 0.8387 35 1 4.2139 -7.8432 1.3842 36 1 2.6249 -7.7617 2.2136 37 1 4.2482 -10.2528 1.4444 38 1 3.4289 -9.8911 3.0005 39 1 2.1836 -11.4731 1.1938 40 1 1.2420 -10.2197 2.0564 41 1 -0.5438 -11.5680 -2.7955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319056581.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:40 Heat of formation + Delta-G solvation = -22.440781 kcal Electronic energy + Delta-G solvation = -26264.100299 eV Core-core repulsion = 22305.429936 eV Total energy + Delta-G solvation = -3958.670363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.29624 -40.79141 -40.11404 -38.61679 -36.65556 -35.80196 -34.78031 -33.28095 -32.55718 -31.35567 -28.60408 -28.23417 -26.39495 -25.34405 -24.13366 -22.99634 -21.85547 -21.19861 -20.43471 -20.35396 -19.87688 -18.27782 -17.97044 -17.55443 -17.20872 -16.86511 -16.55100 -16.44664 -16.07115 -15.87612 -15.38955 -15.17402 -15.08085 -14.88108 -14.28191 -14.03641 -13.80472 -13.50616 -13.36220 -13.24128 -13.18729 -12.86116 -12.71390 -12.54059 -12.40643 -12.33916 -12.24305 -12.10931 -11.87197 -11.67723 -11.57885 -11.51635 -11.22388 -10.39071 -10.27554 -10.02316 -9.78068 -9.40206 -8.47059 -5.95973 -0.67681 0.32627 0.41254 0.62023 1.36764 1.41963 1.56535 1.71719 1.92998 2.03571 2.29256 2.89897 3.19854 3.25037 3.48091 3.52660 3.68344 3.79976 3.89804 4.00413 4.24568 4.25655 4.32351 4.39545 4.45631 4.49366 4.52819 4.67717 4.72833 4.89702 5.01521 5.04747 5.15460 5.26874 5.37967 5.40986 5.42569 5.80335 6.04358 6.28333 6.30955 6.58864 6.84078 7.11763 7.54846 8.09640 8.70698 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.001973 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.974806 B =14187.698816 C =14872.330058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.015 4.015 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.332 4.332 8 H 0.080 0.920 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.620 6.620 12 C 0.066 3.934 13 N -0.666 5.666 14 C 0.059 3.941 15 C 0.143 3.857 16 H 0.068 0.932 17 C -0.109 4.109 18 C -0.128 4.128 19 C 0.107 3.893 20 N -0.593 5.593 21 C 0.610 3.390 22 O -0.557 6.557 23 C -0.002 4.002 24 C 0.087 3.913 25 N -0.601 5.601 26 S 0.797 5.203 27 N -0.551 5.551 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.344 0.656 33 H 0.026 0.974 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -30.512 4.319 30.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.215 4.215 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.506 6.506 12 C -0.067 4.067 13 N -0.298 5.298 14 C -0.071 4.071 15 C 0.039 3.961 16 H 0.087 0.913 17 C -0.147 4.147 18 C -0.166 4.166 19 C -0.015 4.015 20 N -0.326 5.326 21 C 0.394 3.606 22 O -0.435 6.435 23 C -0.175 4.175 24 C -0.104 4.104 25 N -0.443 5.443 26 S 0.838 5.162 27 N -0.403 5.403 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.116 0.884 40 H 0.095 0.905 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.105 -31.685 5.604 32.246 hybrid contribution -0.253 2.487 -2.326 3.414 sum -2.358 -29.198 3.278 29.476 Atomic orbital electron populations 1.69685 1.06884 1.29257 1.50425 1.26084 0.96576 1.02530 0.96291 0.84842 0.78052 0.76952 0.78306 1.19678 1.19668 1.19538 1.19718 0.92747 0.83928 1.49770 0.90165 1.41936 1.09340 1.04750 1.65051 1.20739 0.88227 0.85979 0.82264 1.90488 1.15645 1.87904 1.56546 1.21513 0.94014 0.88265 1.02866 1.59992 1.18654 1.00136 1.51027 1.22207 0.96025 0.88221 1.00659 1.21514 0.93096 0.81074 1.00367 0.91345 1.22521 1.01119 0.97390 0.93630 1.22889 0.96676 0.94078 1.02910 1.22639 0.98044 0.97788 0.83024 1.48380 1.49095 1.18756 1.16331 1.16698 0.78480 0.82797 0.82600 1.90837 1.64395 1.59573 1.28705 1.22075 1.05489 0.99308 0.90590 1.23788 0.93837 0.89876 1.02910 1.72157 1.29845 1.20902 1.21389 1.78829 1.21845 1.16115 0.99373 1.72497 1.24573 1.12660 1.30589 0.91302 0.77031 0.92344 0.87618 0.83758 0.95561 0.90260 0.89851 0.90267 0.90196 0.87461 0.88427 0.90469 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 2 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 3 Si 0.99 43.40 29.55 68.60 2.03 45.42 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.33 -19.13 9.68 84.04 0.81 -18.31 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.06 5.29 -306.99 -1.62 -31.68 16 10 C 0.44 21.43 7.82 87.66 0.69 22.11 16 11 O -0.62 -34.68 15.78 -3.08 -0.05 -34.73 16 12 C 0.07 2.38 6.16 85.56 0.53 2.91 16 13 N -0.67 -21.89 5.82 -517.94 -3.01 -24.91 16 14 C 0.06 1.60 5.04 86.30 0.44 2.03 16 15 C 0.14 3.32 3.09 45.34 0.14 3.46 16 16 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 17 C -0.11 -2.06 6.21 31.78 0.20 -1.87 16 18 C -0.13 -1.63 7.08 31.98 0.23 -1.41 16 19 C 0.11 1.58 5.90 86.85 0.51 2.09 16 20 N -0.59 -12.51 3.06 -791.53 -2.43 -14.94 16 21 C 0.61 14.60 7.59 86.76 0.66 15.26 16 22 O -0.56 -16.92 16.00 -3.91 -0.06 -16.98 16 23 C 0.00 -0.04 6.70 41.98 0.28 0.24 16 24 C 0.09 1.46 11.22 85.22 0.96 2.42 16 25 N -0.60 -9.06 11.41 -92.45 -1.05 -10.11 16 26 S 0.80 7.47 23.69 -56.49 -1.34 6.14 16 27 N -0.55 -7.91 8.44 -80.58 -0.68 -8.59 16 28 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 29 H 0.40 19.78 7.90 -92.71 -0.73 19.05 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 32 H 0.34 12.12 8.49 -89.70 -0.76 11.36 16 33 H 0.03 0.80 6.96 -2.38 -0.02 0.78 16 34 H 0.08 2.02 8.08 -2.39 -0.02 2.00 16 35 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.08 1.61 7.82 -2.39 -0.02 1.59 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.31 6.43 -2.39 -0.02 1.29 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.06 16 41 H 0.22 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -72.71 361.60 -2.43 -75.14 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.39 Total: 36.81 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 5.90 Total: 28.58 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -8.51 Total: -140.38 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: -0.11 Total: -51.71 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 7.47 SS G_CDS: -1.34 Total: 6.14 kcal Total: -72.71 -2.43 -75.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319056581.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.695 kcal (2) G-P(sol) polarization free energy of solvation -72.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds