Wall clock time and date at job start Tue Mar 31 2020 22:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38360 * 127.15505 * 2 1 4 4 C 1.39778 * 126.56056 * 0.02562 * 3 2 1 5 5 H 1.07998 * 120.00124 * 0.30373 * 4 3 2 6 6 C 1.40081 * 119.99861 * 180.30749 * 4 3 2 7 7 N 1.30815 * 119.99951 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47485 * 59.99825 * 8 6 4 10 10 H 1.48506 * 109.47048 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46992 * 299.99400 * 8 6 4 12 12 N 1.33096 * 106.87252 * 180.29180 * 3 2 1 13 13 N 1.28516 * 109.74612 * 359.74976 * 12 3 2 14 14 C 1.32382 * 110.20373 * 359.97438 * 13 12 3 15 15 S 1.76203 * 126.26039 * 180.02562 * 14 13 12 16 16 C 1.80996 * 99.99861 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.47308 * 180.02562 * 16 15 14 18 18 N 1.46507 * 109.47261 * 179.97438 * 17 16 15 19 19 C 1.33787 * 124.17730 * 269.95727 * 18 17 16 20 20 O 1.21544 * 123.77238 * 0.03466 * 19 18 17 21 21 N 1.34861 * 112.49937 * 180.12117 * 19 18 17 22 22 C 1.47309 * 106.44087 * 359.87131 * 21 19 18 23 23 C 1.53006 * 110.59850 * 241.52072 * 22 21 19 24 24 C 1.52997 * 110.60267 * 118.72310 * 22 21 19 25 25 C 1.34767 * 124.17630 * 89.99939 * 18 17 16 26 26 O 1.21237 * 127.15808 * 0.02562 * 25 18 17 27 27 H 1.09004 * 109.46828 * 270.15280 * 1 2 3 28 28 H 1.08995 * 109.46934 * 30.15119 * 1 2 3 29 29 H 1.09000 * 109.47127 * 150.15964 * 1 2 3 30 30 H 0.97001 * 119.99969 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47664 * 60.00098 * 16 15 14 32 32 H 1.09000 * 109.47380 * 299.99847 * 16 15 14 33 33 H 1.08999 * 109.46883 * 60.00139 * 17 16 15 34 34 H 1.08995 * 109.47051 * 299.99946 * 17 16 15 35 35 H 0.97001 * 126.87283 * 179.97438 * 21 19 18 36 36 H 1.09001 * 109.47002 * 296.46320 * 23 22 21 37 37 H 1.08993 * 109.46955 * 56.46758 * 23 22 21 38 38 H 1.09000 * 109.47050 * 176.46587 * 23 22 21 39 39 H 1.09008 * 109.47157 * 183.52839 * 24 22 21 40 40 H 1.08991 * 109.47304 * 303.53589 * 24 22 21 41 41 H 1.09003 * 109.47101 * 63.53649 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0059 6 6 2.8768 3.4569 -0.0061 7 7 4.1476 3.1467 -0.0122 8 14 2.3530 5.2499 -0.0047 9 1 1.5493 5.5300 1.2122 10 1 3.5582 6.1176 -0.0131 11 1 1.5353 5.5277 -1.2128 12 7 3.5490 0.6414 -0.0065 13 7 3.5370 -0.6437 -0.0051 14 6 2.2905 -1.0893 0.0028 15 16 1.7873 -2.7780 0.0082 16 6 3.4058 -3.5881 0.0007 17 6 3.2162 -5.1063 0.0035 18 7 4.5263 -5.7621 -0.0033 19 6 5.1917 -6.1005 -1.1135 20 8 4.7772 -5.8977 -2.2379 21 7 6.3731 -6.6935 -0.8466 22 6 6.4919 -6.7446 0.6208 23 6 7.7088 -5.9448 1.0905 24 6 6.5830 -8.1935 1.1035 25 6 5.2096 -6.0997 1.1082 26 8 4.8690 -5.9251 2.2586 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8914 -0.5113 30 1 4.8179 3.8477 -0.0171 31 1 3.9656 -3.2900 0.8872 32 1 3.9559 -3.2927 -0.8928 33 1 2.6567 -5.4042 -0.8833 34 1 2.6660 -5.4021 0.8966 35 1 7.0191 -7.0209 -1.4920 36 1 8.6174 -6.4024 0.6991 37 1 7.6324 -4.9201 0.7273 38 1 7.7436 -5.9425 2.1800 39 1 6.6070 -8.2127 2.1931 40 1 5.7152 -8.7497 0.7493 41 1 7.4919 -8.6505 0.7120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321219538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:11 Heat of formation + Delta-G solvation = 25.903615 kcal Electronic energy + Delta-G solvation = -26620.401581 eV Core-core repulsion = 22663.827588 eV Total energy + Delta-G solvation = -3956.573993 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.72123 -40.51231 -38.79148 -36.93851 -35.86320 -33.70448 -33.33679 -32.15453 -30.83060 -29.32474 -27.96746 -26.54518 -25.70215 -24.97745 -23.90679 -21.78327 -20.87322 -20.63495 -20.24792 -18.18777 -17.38567 -17.12301 -16.54894 -16.07188 -15.95871 -15.84965 -15.39862 -14.85304 -14.79522 -14.38682 -14.37749 -14.29425 -13.87342 -13.40967 -13.14856 -13.06394 -12.79440 -12.67933 -12.63740 -12.33048 -12.21956 -12.01193 -11.56334 -11.42504 -11.28036 -10.98392 -10.93234 -10.43847 -10.36542 -10.25840 -10.01744 -9.76416 -9.73278 -9.61618 -8.71164 -8.44540 -8.39679 -6.86867 -6.65267 -4.58427 1.40995 1.61940 2.29814 2.72618 2.82863 2.85999 2.92630 3.05980 3.08281 3.35251 3.62303 3.86876 4.13496 4.23143 4.33989 4.41821 4.69515 4.80174 5.02385 5.09226 5.09264 5.22094 5.25846 5.32074 5.33060 5.39063 5.51922 5.55115 5.68654 5.74757 5.88966 6.04443 6.10499 6.52863 6.75700 6.83346 6.87937 7.16263 7.23493 7.47622 7.87708 7.92447 8.16723 8.69407 8.85035 10.27219 10.62719 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.002547 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.380483 B =10991.664645 C =11637.361073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.515 5.515 3 C 0.347 3.653 4 C -0.446 4.446 5 H 0.084 0.916 6 C 0.078 3.922 7 N -0.736 5.736 8 Si 0.922 3.078 9 H -0.265 1.265 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.333 5.333 13 N -0.284 5.284 14 C 0.045 3.955 15 S -0.035 6.035 16 C -0.114 4.114 17 C 0.135 3.865 18 N -0.571 5.571 19 C 0.703 3.297 20 O -0.535 6.535 21 N -0.723 5.723 22 C 0.117 3.883 23 C -0.149 4.149 24 C -0.145 4.145 25 C 0.529 3.471 26 O -0.457 6.457 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.280 0.720 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.439 0.561 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -19.493 1.582 19.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.217 5.217 3 C 0.103 3.897 4 C -0.487 4.487 5 H 0.102 0.898 6 C -0.148 4.148 7 N -0.360 5.360 8 Si 0.745 3.255 9 H -0.189 1.189 10 H -0.201 1.201 11 H -0.190 1.190 12 N -0.181 5.181 13 N -0.130 5.130 14 C -0.326 4.326 15 S 0.191 5.809 16 C -0.264 4.264 17 C 0.013 3.987 18 N -0.317 5.317 19 C 0.403 3.597 20 O -0.407 6.407 21 N -0.388 5.388 22 C 0.027 3.973 23 C -0.207 4.207 24 C -0.204 4.204 25 C 0.315 3.685 26 O -0.325 6.325 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.283 0.717 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.898 -19.689 1.621 19.968 hybrid contribution -0.169 1.503 -0.325 1.547 sum 2.729 -18.187 1.297 18.436 Atomic orbital electron populations 1.21501 0.78460 1.02740 1.01659 1.46018 1.06096 1.05220 1.64392 1.21621 0.84742 0.88404 0.94913 1.18073 0.94698 0.86423 1.49466 0.89780 1.25806 0.94337 1.01333 0.93297 1.70003 1.00725 1.35136 1.30165 0.86165 0.78970 0.80580 0.79751 1.18938 1.20069 1.18952 1.75461 1.15313 0.97771 1.29521 1.74540 1.15165 1.07656 1.15617 1.25166 0.91602 0.92329 1.23552 1.84143 1.08686 0.92319 1.95781 1.23589 0.99538 0.95515 1.07763 1.21392 0.81098 0.90471 1.05745 1.46386 1.21328 1.55971 1.08060 1.15957 0.81265 0.78243 0.84201 1.91046 1.70630 1.58502 1.20552 1.45744 1.21138 1.64801 1.07157 1.21480 0.95615 0.98754 0.81469 1.22029 0.95049 1.00453 1.03219 1.21994 1.03727 0.91561 1.03082 1.20827 0.85407 0.77235 0.85023 1.90820 1.72141 1.51961 1.17599 0.92515 0.90325 0.91494 0.90903 0.88634 0.88373 0.87574 0.87785 0.71664 0.90206 0.90942 0.89659 0.89695 0.91408 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.87 10.87 59.85 0.65 2.52 16 2 N -0.51 -12.67 3.26 -123.18 -0.40 -13.07 16 3 C 0.35 9.87 7.53 -154.80 -1.17 8.71 16 4 C -0.45 -11.94 9.04 -38.32 -0.35 -12.29 16 5 H 0.08 2.03 7.31 -52.49 -0.38 1.64 16 6 C 0.08 2.01 5.50 -17.29 -0.10 1.91 16 7 N -0.74 -20.46 11.94 55.56 0.66 -19.80 16 8 Si 0.92 18.66 29.56 -169.99 -5.03 13.64 16 9 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 10 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 11 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 12 N -0.33 -10.22 10.48 31.26 0.33 -9.89 16 13 N -0.28 -7.99 11.62 30.89 0.36 -7.64 16 14 C 0.05 1.12 8.09 -87.28 -0.71 0.41 16 15 S -0.04 -0.64 21.79 -107.50 -2.34 -2.99 16 16 C -0.11 -1.92 5.55 37.16 0.21 -1.71 16 17 C 0.14 1.76 5.70 -4.04 -0.02 1.74 16 18 N -0.57 -7.14 2.60 -120.63 -0.31 -7.45 16 19 C 0.70 8.84 8.63 -87.72 -0.76 8.09 16 20 O -0.53 -8.64 17.48 5.33 0.09 -8.55 16 21 N -0.72 -6.02 5.93 -52.85 -0.31 -6.33 16 22 C 0.12 0.92 1.37 -132.09 -0.18 0.74 16 23 C -0.15 -1.02 8.98 37.16 0.33 -0.68 16 24 C -0.15 -0.75 8.98 37.16 0.33 -0.42 16 25 C 0.53 6.16 6.98 -10.56 -0.07 6.08 16 26 O -0.46 -6.43 17.76 5.59 0.10 -6.33 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 29 H 0.07 1.08 7.85 -51.93 -0.41 0.67 16 30 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 31 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 32 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 33 H 0.11 1.30 7.86 -51.93 -0.41 0.90 16 34 H 0.10 1.21 8.00 -51.93 -0.42 0.80 16 35 H 0.44 2.50 8.96 -40.82 -0.37 2.13 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -36.89 370.04 -8.41 -45.30 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.31 Total: 2.42 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: -1.82 Total: 15.10 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: 0.32 Total: -64.18 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: 0.19 Total: -14.88 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -2.34 Total: -2.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.89 -8.41 -45.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321219538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.204 kcal (2) G-P(sol) polarization free energy of solvation -36.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds