Wall clock time and date at job start Tue Mar 31 2020 22:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.38360 * 127.15505 * 2 1 4 4 C 1.39778 * 126.56056 * 0.02562 * 3 2 1 5 5 H 1.07998 * 120.00124 * 0.30373 * 4 3 2 6 6 C 1.40081 * 119.99861 * 180.30749 * 4 3 2 7 7 N 1.30815 * 119.99951 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47485 * 59.99825 * 8 6 4 10 10 H 1.48506 * 109.47048 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46992 * 299.99400 * 8 6 4 12 12 N 1.33096 * 106.87252 * 180.29180 * 3 2 1 13 13 N 1.28516 * 109.74612 * 359.74976 * 12 3 2 14 14 C 1.32382 * 110.20373 * 359.97438 * 13 12 3 15 15 S 1.76203 * 126.26039 * 180.02562 * 14 13 12 16 16 C 1.80996 * 99.99861 * 0.02562 * 15 14 13 17 17 C 1.52999 * 109.47308 * 180.02562 * 16 15 14 18 18 N 1.46507 * 109.47261 * 179.97438 * 17 16 15 19 19 C 1.33787 * 124.17730 * 269.95727 * 18 17 16 20 20 O 1.21544 * 123.77238 * 0.03466 * 19 18 17 21 21 N 1.34861 * 112.49937 * 180.12117 * 19 18 17 22 22 C 1.47309 * 106.44087 * 359.87131 * 21 19 18 23 23 C 1.53006 * 110.59850 * 241.52072 * 22 21 19 24 24 C 1.52997 * 110.60267 * 118.72310 * 22 21 19 25 25 C 1.34767 * 124.17630 * 89.99939 * 18 17 16 26 26 O 1.21237 * 127.15808 * 0.02562 * 25 18 17 27 27 H 1.09004 * 109.46828 * 270.15280 * 1 2 3 28 28 H 1.08995 * 109.46934 * 30.15119 * 1 2 3 29 29 H 1.09000 * 109.47127 * 150.15964 * 1 2 3 30 30 H 0.97001 * 119.99969 * 179.97438 * 7 6 4 31 31 H 1.09004 * 109.47664 * 60.00098 * 16 15 14 32 32 H 1.09000 * 109.47380 * 299.99847 * 16 15 14 33 33 H 1.08999 * 109.46883 * 60.00139 * 17 16 15 34 34 H 1.08995 * 109.47051 * 299.99946 * 17 16 15 35 35 H 0.97001 * 126.87283 * 179.97438 * 21 19 18 36 36 H 1.09001 * 109.47002 * 296.46320 * 23 22 21 37 37 H 1.08993 * 109.46955 * 56.46758 * 23 22 21 38 38 H 1.09000 * 109.47050 * 176.46587 * 23 22 21 39 39 H 1.09008 * 109.47157 * 183.52839 * 24 22 21 40 40 H 1.08991 * 109.47304 * 303.53589 * 24 22 21 41 41 H 1.09003 * 109.47101 * 63.53649 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3006 1.1027 0.0000 4 6 1.9087 2.4444 0.0005 5 1 0.8595 2.7005 0.0059 6 6 2.8768 3.4569 -0.0061 7 7 4.1476 3.1467 -0.0122 8 14 2.3530 5.2499 -0.0047 9 1 1.5493 5.5300 1.2122 10 1 3.5582 6.1176 -0.0131 11 1 1.5353 5.5277 -1.2128 12 7 3.5490 0.6414 -0.0065 13 7 3.5370 -0.6437 -0.0051 14 6 2.2905 -1.0893 0.0028 15 16 1.7873 -2.7780 0.0082 16 6 3.4058 -3.5881 0.0007 17 6 3.2162 -5.1063 0.0035 18 7 4.5263 -5.7621 -0.0033 19 6 5.1917 -6.1005 -1.1135 20 8 4.7772 -5.8977 -2.2379 21 7 6.3731 -6.6935 -0.8466 22 6 6.4919 -6.7446 0.6208 23 6 7.7088 -5.9448 1.0905 24 6 6.5830 -8.1935 1.1035 25 6 5.2096 -6.0997 1.1082 26 8 4.8690 -5.9251 2.2586 27 1 -0.3633 0.0027 1.0277 28 1 -0.3633 0.8886 -0.5162 29 1 -0.3633 -0.8914 -0.5113 30 1 4.8179 3.8477 -0.0171 31 1 3.9656 -3.2900 0.8872 32 1 3.9559 -3.2927 -0.8928 33 1 2.6567 -5.4042 -0.8833 34 1 2.6660 -5.4021 0.8966 35 1 7.0191 -7.0209 -1.4920 36 1 8.6174 -6.4024 0.6991 37 1 7.6324 -4.9201 0.7273 38 1 7.7436 -5.9425 2.1800 39 1 6.6070 -8.2127 2.1931 40 1 5.7152 -8.7497 0.7493 41 1 7.4919 -8.6505 0.7120 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321219538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:10 Heat of formation + Delta-G solvation = -0.448128 kcal Electronic energy + Delta-G solvation = -26621.544278 eV Core-core repulsion = 22663.827588 eV Total energy + Delta-G solvation = -3957.716690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.64257 -42.49876 -39.81557 -37.82396 -36.92792 -35.65543 -35.19474 -33.06152 -31.85244 -31.32215 -28.45291 -28.32234 -27.50096 -26.11243 -24.96147 -22.90602 -22.71476 -22.21244 -21.39514 -19.30377 -19.11785 -18.27940 -17.69574 -17.47647 -17.21528 -16.92539 -16.76224 -16.63747 -16.14524 -15.70802 -15.55266 -15.35214 -15.19468 -14.68511 -14.59900 -13.98181 -13.89065 -13.81365 -13.65942 -13.29671 -13.18086 -13.13357 -12.96829 -12.78656 -12.76174 -12.58250 -12.14643 -12.01769 -11.85592 -11.73519 -11.45036 -11.23855 -11.13109 -10.61985 -10.55515 -10.42225 -10.32709 -8.61006 -8.56599 -6.62277 0.18359 0.48310 0.97946 1.17031 1.28878 1.40544 1.56319 1.59985 1.82270 2.07792 2.17097 2.41151 2.48024 2.80992 3.31404 3.44789 3.53986 3.64926 3.75800 4.06233 4.10667 4.14872 4.26874 4.44647 4.50548 4.59753 4.61003 4.65935 4.71824 4.73653 4.84728 4.86060 4.92111 5.09902 5.19048 5.28932 5.52591 5.76532 5.90705 5.98921 6.18981 6.25726 6.72832 6.89004 7.01626 8.38707 8.59583 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.002547 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.380483 B =10991.664645 C =11637.361073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.520 5.520 3 C 0.318 3.682 4 C -0.470 4.470 5 H 0.106 0.894 6 C 0.027 3.973 7 N -0.789 5.789 8 Si 1.009 2.991 9 H -0.252 1.252 10 H -0.272 1.272 11 H -0.253 1.253 12 N -0.390 5.390 13 N -0.332 5.332 14 C 0.049 3.951 15 S 0.030 5.970 16 C -0.109 4.109 17 C 0.141 3.859 18 N -0.576 5.576 19 C 0.698 3.302 20 O -0.576 6.576 21 N -0.700 5.700 22 C 0.125 3.875 23 C -0.148 4.148 24 C -0.140 4.140 25 C 0.521 3.479 26 O -0.485 6.485 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.285 0.715 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.453 0.547 36 H 0.113 0.887 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 -20.745 1.861 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.222 5.222 3 C 0.071 3.929 4 C -0.510 4.510 5 H 0.123 0.877 6 C -0.194 4.194 7 N -0.414 5.414 8 Si 0.827 3.173 9 H -0.176 1.176 10 H -0.197 1.197 11 H -0.177 1.177 12 N -0.236 5.236 13 N -0.177 5.177 14 C -0.325 4.325 15 S 0.256 5.744 16 C -0.260 4.260 17 C 0.018 3.982 18 N -0.323 5.323 19 C 0.399 3.601 20 O -0.452 6.452 21 N -0.366 5.366 22 C 0.035 3.965 23 C -0.206 4.206 24 C -0.198 4.198 25 C 0.309 3.691 26 O -0.355 6.355 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.301 0.699 36 H 0.131 0.869 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.977 -20.988 1.910 21.167 hybrid contribution 0.098 1.692 -0.385 1.738 sum 2.075 -19.296 1.525 19.467 Atomic orbital electron populations 1.21891 0.75035 1.04633 1.03493 1.46361 1.08178 1.04203 1.63466 1.22074 0.85063 0.89982 0.95737 1.18623 0.96100 0.86344 1.49933 0.87656 1.27042 0.93882 1.06668 0.91761 1.70161 1.02460 1.37158 1.31577 0.84874 0.78692 0.73271 0.80440 1.17633 1.19658 1.17659 1.75311 1.17509 0.99014 1.31806 1.74414 1.17351 1.07272 1.18630 1.26329 0.91188 0.95525 1.19430 1.83821 1.08468 0.87182 1.94961 1.23595 0.98629 0.98206 1.05564 1.21338 0.82137 0.87595 1.07151 1.46467 1.21307 1.55791 1.08693 1.16126 0.82171 0.78331 0.83507 1.91017 1.71840 1.60382 1.21932 1.45689 1.19778 1.63181 1.07955 1.21652 0.93718 1.00508 0.80588 1.22081 0.95740 0.99173 1.03615 1.22040 1.05231 0.89050 1.03468 1.21553 0.86415 0.76694 0.84411 1.90800 1.73032 1.53147 1.18510 0.90601 0.89175 0.88925 0.90499 0.90578 0.90803 0.86483 0.86000 0.69904 0.86864 0.93325 0.89204 0.89184 0.91564 0.87163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.24 10.87 127.77 1.39 4.63 16 2 N -0.52 -25.77 3.26 -543.62 -1.77 -27.54 16 3 C 0.32 18.61 7.53 133.23 1.00 19.61 16 4 C -0.47 -25.51 9.04 23.09 0.21 -25.30 16 5 H 0.11 5.01 7.31 -2.91 -0.02 4.99 16 6 C 0.03 1.42 5.50 85.29 0.47 1.89 16 7 N -0.79 -45.57 11.94 21.85 0.26 -45.31 16 8 Si 1.01 38.15 29.56 68.60 2.03 40.18 16 9 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 10 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 11 H -0.25 -8.99 7.11 99.48 0.71 -8.28 16 12 N -0.39 -25.15 10.48 -55.01 -0.58 -25.72 16 13 N -0.33 -19.63 11.62 -56.17 -0.65 -20.28 16 14 C 0.05 2.46 8.09 179.18 1.45 3.91 16 15 S 0.03 1.09 21.79 -56.49 -1.23 -0.14 16 16 C -0.11 -3.77 5.55 71.98 0.40 -3.37 16 17 C 0.14 3.62 5.70 86.38 0.49 4.12 16 18 N -0.58 -14.32 2.60 -772.81 -2.01 -16.33 16 19 C 0.70 17.36 8.63 179.34 1.55 18.90 16 20 O -0.58 -18.77 17.48 -3.85 -0.07 -18.84 16 21 N -0.70 -10.61 5.93 -439.35 -2.61 -13.21 16 22 C 0.13 1.74 1.37 2.98 0.00 1.75 16 23 C -0.15 -1.76 8.98 71.98 0.65 -1.11 16 24 C -0.14 -1.03 8.98 71.98 0.65 -0.38 16 25 C 0.52 11.86 6.98 87.94 0.61 12.47 16 26 O -0.48 -13.53 17.76 -2.90 -0.05 -13.59 16 27 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 28 H 0.09 2.96 7.54 -2.39 -0.02 2.95 16 29 H 0.09 2.76 7.85 -2.39 -0.02 2.74 16 30 H 0.28 14.87 8.30 -92.71 -0.77 14.10 16 31 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 32 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.12 2.78 7.86 -2.39 -0.02 2.76 16 34 H 0.12 2.70 8.00 -2.39 -0.02 2.68 16 35 H 0.45 4.19 8.96 -92.71 -0.83 3.36 16 36 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 Total: -1.00 -86.40 370.04 2.44 -83.96 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.25 Total: 19.69 kcal Atomic # 6 Polarization: 28.26 SS G_CDS: 8.87 Total: 37.13 kcal Atomic # 7 Polarization: -141.04 SS G_CDS: -7.36 Total: -148.40 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.12 Total: -32.42 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -1.23 Total: -0.14 kcal Total: -86.40 2.44 -83.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321219538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.513 kcal (2) G-P(sol) polarization free energy of solvation -86.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds