Wall clock time and date at job start Tue Mar 31 2020 22:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00563 * 2 1 4 4 O 1.20821 * 119.99780 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99931 * 179.97438 * 3 2 1 6 6 N 1.46509 * 109.46791 * 179.97438 * 5 3 2 7 7 C 1.37089 * 119.99892 * 263.10254 * 6 5 3 8 8 H 1.08002 * 120.00037 * 142.05898 * 7 6 5 9 9 C 1.38956 * 120.00219 * 322.05855 * 7 6 5 10 10 N 1.31418 * 119.99763 * 158.26117 * 9 7 6 11 11 Si 1.86791 * 119.99805 * 338.26329 * 9 7 6 12 12 H 1.48502 * 109.47187 * 95.91414 * 11 9 7 13 13 H 1.48500 * 109.47082 * 215.91352 * 11 9 7 14 14 H 1.48494 * 109.47519 * 335.91095 * 11 9 7 15 15 C 1.34771 * 119.99577 * 83.10409 * 6 5 3 16 16 O 1.21295 * 120.00680 * 0.02562 * 15 6 5 17 17 C 1.50707 * 119.99684 * 180.02562 * 15 6 5 18 18 C 1.53004 * 109.47154 * 180.02562 * 17 15 6 19 19 C 1.50698 * 109.46987 * 180.02562 * 18 17 15 20 20 C 1.38230 * 120.76587 * 90.00012 * 19 18 17 21 21 C 1.50696 * 120.37789 * 0.02562 * 20 19 18 22 22 N 1.32453 * 119.24527 * 179.97438 * 20 19 18 23 23 C 1.32318 * 120.90375 * 0.02562 * 22 20 19 24 24 O 1.35453 * 119.16602 * 180.02562 * 23 22 20 25 25 N 1.32281 * 121.67009 * 359.97438 * 23 22 20 26 26 C 1.32783 * 120.66471 * 359.70487 * 25 23 22 27 27 O 1.35508 * 120.48082 * 180.28667 * 26 25 23 28 28 H 1.09004 * 109.46306 * 59.99945 * 1 2 3 29 29 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46982 * 300.00650 * 1 2 3 31 31 H 1.09004 * 109.47127 * 60.00637 * 5 3 2 32 32 H 1.08992 * 109.47635 * 300.00130 * 5 3 2 33 33 H 0.96998 * 119.99589 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46674 * 299.99755 * 17 15 6 35 35 H 1.08995 * 109.47390 * 59.99968 * 17 15 6 36 36 H 1.09001 * 109.46469 * 299.99663 * 18 17 15 37 37 H 1.08995 * 109.47243 * 59.99577 * 18 17 15 38 38 H 1.08997 * 109.47035 * 89.99844 * 21 20 19 39 39 H 1.08998 * 109.47657 * 210.00166 * 21 20 19 40 40 H 1.09000 * 109.47430 * 330.00629 * 21 20 19 41 41 H 0.96704 * 114.00264 * 89.99669 * 24 23 22 42 42 H 0.96703 * 113.99718 * 270.29242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2746 0.0006 6 7 3.9819 2.6796 -0.0002 7 6 4.3135 3.2956 -1.1791 8 1 4.0352 4.3256 -1.3471 9 6 5.0077 2.5950 -2.1579 10 7 4.9611 2.9940 -3.4092 11 14 6.0069 1.0863 -1.6951 12 1 5.1945 -0.1353 -1.9256 13 1 7.2336 1.0298 -2.5301 14 1 6.3871 1.1648 -0.2618 15 6 4.0381 3.3662 1.1582 16 8 3.7452 2.8209 2.2013 17 6 4.4649 4.8115 1.1574 18 6 4.4436 5.3504 2.5892 19 6 4.8698 6.7959 2.5883 20 6 3.9386 7.8075 2.4455 21 6 2.4760 7.4804 2.2884 22 7 4.3465 9.0677 2.4494 23 6 5.6281 9.3667 2.5872 24 8 6.0062 10.6674 2.5868 25 7 6.5493 8.4277 2.7263 26 6 6.2112 7.1437 2.7377 27 8 7.1574 6.1850 2.8863 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9564 0.7804 -0.8892 32 1 3.9558 0.7807 0.8907 33 1 5.4460 2.5051 -4.0924 34 1 5.4744 4.8919 0.7543 35 1 3.7798 5.3924 0.5400 36 1 3.4342 5.2699 2.9926 37 1 5.1289 4.7695 3.2063 38 1 2.0058 7.4373 3.2708 39 1 1.9936 8.2518 1.6882 40 1 2.3707 6.5154 1.7926 41 1 6.0147 11.0749 3.4638 42 1 7.5376 5.8752 2.0528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321994235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:48 Heat of formation + Delta-G solvation = -134.363086 kcal Electronic energy + Delta-G solvation = -30005.416810 eV Core-core repulsion = 25566.847509 eV Total energy + Delta-G solvation = -4438.569301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47432 -40.09427 -38.86152 -38.25750 -37.14271 -36.03523 -35.08221 -34.51432 -33.19435 -32.16341 -30.39550 -29.11335 -28.21900 -26.66536 -25.31215 -24.34439 -22.99540 -22.00816 -20.81002 -19.37058 -19.17241 -18.62215 -18.01998 -17.51789 -17.23434 -16.73385 -15.96917 -15.88477 -15.58164 -15.46340 -15.30315 -14.75566 -14.46110 -13.95693 -13.85225 -13.55261 -13.30397 -13.15276 -12.86705 -12.70322 -12.53714 -12.49350 -12.36129 -12.14834 -11.95704 -11.76553 -11.66018 -11.55233 -11.08452 -10.76142 -10.70214 -10.67716 -10.43247 -10.41011 -10.21462 -9.98711 -9.45116 -9.31481 -9.09079 -8.78848 -8.10614 -6.66986 -4.29887 0.64524 0.84502 2.78548 2.82334 2.87901 2.94170 3.10417 3.12733 3.23768 3.62574 3.66932 3.91658 4.12640 4.22752 4.68404 4.77586 4.79050 5.05035 5.21349 5.31372 5.38079 5.39567 5.46654 5.52078 5.56381 5.60030 5.72804 5.74054 5.75833 5.80166 5.96534 6.11122 6.16330 6.37358 6.53102 6.69767 6.78338 7.03073 7.26784 7.32080 7.84672 7.89850 8.03885 8.31560 8.72346 9.08009 9.40741 10.43144 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.003496 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.659204 B = 8006.633801 C = 9048.884824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.369 6.369 3 C 0.451 3.549 4 O -0.491 6.491 5 C 0.108 3.892 6 N -0.448 5.448 7 C -0.347 4.347 8 H 0.107 0.893 9 C 0.067 3.933 10 N -0.848 5.848 11 Si 0.861 3.139 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.255 1.255 15 C 0.496 3.504 16 O -0.589 6.589 17 C -0.110 4.110 18 C -0.057 4.057 19 C -0.198 4.198 20 C 0.211 3.789 21 C -0.113 4.113 22 N -0.530 5.530 23 C 0.508 3.492 24 O -0.457 6.457 25 N -0.553 5.553 26 C 0.386 3.614 27 O -0.470 6.470 28 H 0.059 0.941 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.278 0.722 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.409 0.591 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.698 3.002 8.833 9.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.286 6.286 3 C 0.291 3.709 4 O -0.376 6.376 5 C -0.017 4.017 6 N -0.170 5.170 7 C -0.474 4.474 8 H 0.125 0.875 9 C -0.142 4.142 10 N -0.482 5.482 11 Si 0.687 3.313 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.178 1.178 15 C 0.287 3.713 16 O -0.474 6.474 17 C -0.150 4.150 18 C -0.096 4.096 19 C -0.203 4.203 20 C 0.067 3.933 21 C -0.170 4.170 22 N -0.257 5.257 23 C 0.203 3.797 24 O -0.260 6.260 25 N -0.289 5.289 26 C 0.198 3.802 27 O -0.278 6.278 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.268 0.732 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -1.729 4.004 9.102 10.093 hybrid contribution 0.390 -1.378 -0.285 1.460 sum -1.339 2.626 8.818 9.297 Atomic orbital electron populations 1.23139 0.77490 1.02870 1.02251 1.86521 1.22716 1.34504 1.84887 1.24724 0.92819 0.81204 0.72132 1.90598 1.66617 1.36287 1.44091 1.21387 0.86892 0.88538 1.04866 1.43405 1.57916 1.08240 1.07395 1.19082 1.36755 1.00045 0.91538 0.87506 1.25386 0.96092 0.98069 0.94612 1.69771 1.38092 1.40506 0.99830 0.87151 0.81008 0.82674 0.80466 1.19593 1.20613 1.17846 1.20314 0.79467 0.88924 0.82615 1.90570 1.53850 1.71173 1.31777 1.21300 1.03895 0.93821 0.95943 1.20260 1.03652 0.87813 0.97838 1.21744 0.93781 0.99699 1.05108 1.21379 0.97457 0.85883 0.88610 1.20927 0.88083 1.04060 1.03936 1.67822 1.17580 1.22294 1.18020 1.19756 0.83079 0.85247 0.91627 1.84731 1.88342 1.17917 1.35011 1.67352 1.41051 1.01751 1.18757 1.18934 0.86800 0.84813 0.89604 1.84664 1.55446 1.51625 1.36079 0.92205 0.88714 0.92299 0.87404 0.87310 0.91149 0.89183 0.89277 0.89548 0.89131 0.89239 0.89513 0.88816 0.73220 0.72682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.57 16 2 O -0.37 -6.58 10.56 -39.25 -0.41 -7.00 16 3 C 0.45 9.46 7.98 36.00 0.29 9.75 16 4 O -0.49 -11.46 16.01 -18.75 -0.30 -11.76 16 5 C 0.11 2.28 4.49 -5.19 -0.02 2.26 16 6 N -0.45 -10.06 1.74 -116.09 -0.20 -10.27 16 7 C -0.35 -8.39 9.05 -14.93 -0.14 -8.53 16 8 H 0.11 2.73 7.24 -52.49 -0.38 2.35 16 9 C 0.07 1.64 5.27 -17.46 -0.09 1.55 16 10 N -0.85 -22.00 13.96 55.50 0.77 -21.23 16 11 Si 0.86 18.14 25.01 -169.99 -4.25 13.89 16 12 H -0.27 -5.43 6.71 56.52 0.38 -5.06 16 13 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 14 H -0.25 -5.27 7.11 56.52 0.40 -4.87 16 15 C 0.50 10.46 7.37 -10.98 -0.08 10.38 16 16 O -0.59 -13.28 15.68 5.54 0.09 -13.20 16 17 C -0.11 -1.87 4.27 -27.88 -0.12 -1.99 16 18 C -0.06 -0.84 3.79 -27.88 -0.11 -0.94 16 19 C -0.20 -2.77 5.18 -104.20 -0.54 -3.31 16 20 C 0.21 2.89 6.82 -82.33 -0.56 2.33 16 21 C -0.11 -1.28 9.44 36.00 0.34 -0.94 16 22 N -0.53 -7.69 10.40 -11.01 -0.11 -7.81 16 23 C 0.51 7.33 8.71 -91.28 -0.80 6.54 16 24 O -0.46 -5.45 13.64 -18.05 -0.25 -5.69 16 25 N -0.55 -8.38 10.49 -14.79 -0.16 -8.54 16 26 C 0.39 5.55 7.81 -16.71 -0.13 5.42 16 27 O -0.47 -6.03 12.74 -18.22 -0.23 -6.26 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 31 H 0.11 2.25 3.66 -51.93 -0.19 2.06 16 32 H 0.11 2.11 7.64 -51.93 -0.40 1.71 16 33 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 34 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 35 H 0.09 1.53 7.00 -51.93 -0.36 1.16 16 36 H 0.09 1.26 6.76 -51.93 -0.35 0.91 16 37 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.12 6.04 -51.93 -0.31 0.80 16 41 H 0.41 2.54 9.06 45.56 0.41 2.95 16 42 H 0.41 3.67 9.06 45.56 0.41 4.08 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -33.38 363.00 -3.73 -37.11 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -3.25 Total: 11.21 kcal Atomic # 6 Polarization: 24.97 SS G_CDS: -0.89 Total: 24.08 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.30 Total: -47.84 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -1.11 Total: -43.91 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -4.25 Total: 13.89 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.38 -3.73 -37.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321994235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.257 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds