Wall clock time and date at job start Tue Mar 31 2020 22:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34227 * 117.00563 * 2 1 4 4 O 1.20821 * 119.99780 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99931 * 179.97438 * 3 2 1 6 6 N 1.46509 * 109.46791 * 179.97438 * 5 3 2 7 7 C 1.37089 * 119.99892 * 263.10254 * 6 5 3 8 8 H 1.08002 * 120.00037 * 142.05898 * 7 6 5 9 9 C 1.38956 * 120.00219 * 322.05855 * 7 6 5 10 10 N 1.31418 * 119.99763 * 158.26117 * 9 7 6 11 11 Si 1.86791 * 119.99805 * 338.26329 * 9 7 6 12 12 H 1.48502 * 109.47187 * 95.91414 * 11 9 7 13 13 H 1.48500 * 109.47082 * 215.91352 * 11 9 7 14 14 H 1.48494 * 109.47519 * 335.91095 * 11 9 7 15 15 C 1.34771 * 119.99577 * 83.10409 * 6 5 3 16 16 O 1.21295 * 120.00680 * 0.02562 * 15 6 5 17 17 C 1.50707 * 119.99684 * 180.02562 * 15 6 5 18 18 C 1.53004 * 109.47154 * 180.02562 * 17 15 6 19 19 C 1.50698 * 109.46987 * 180.02562 * 18 17 15 20 20 C 1.38230 * 120.76587 * 90.00012 * 19 18 17 21 21 C 1.50696 * 120.37789 * 0.02562 * 20 19 18 22 22 N 1.32453 * 119.24527 * 179.97438 * 20 19 18 23 23 C 1.32318 * 120.90375 * 0.02562 * 22 20 19 24 24 O 1.35453 * 119.16602 * 180.02562 * 23 22 20 25 25 N 1.32281 * 121.67009 * 359.97438 * 23 22 20 26 26 C 1.32783 * 120.66471 * 359.70487 * 25 23 22 27 27 O 1.35508 * 120.48082 * 180.28667 * 26 25 23 28 28 H 1.09004 * 109.46306 * 59.99945 * 1 2 3 29 29 H 1.08996 * 109.47291 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46982 * 300.00650 * 1 2 3 31 31 H 1.09004 * 109.47127 * 60.00637 * 5 3 2 32 32 H 1.08992 * 109.47635 * 300.00130 * 5 3 2 33 33 H 0.96998 * 119.99589 * 179.97438 * 10 9 7 34 34 H 1.09000 * 109.46674 * 299.99755 * 17 15 6 35 35 H 1.08995 * 109.47390 * 59.99968 * 17 15 6 36 36 H 1.09001 * 109.46469 * 299.99663 * 18 17 15 37 37 H 1.08995 * 109.47243 * 59.99577 * 18 17 15 38 38 H 1.08997 * 109.47035 * 89.99844 * 21 20 19 39 39 H 1.08998 * 109.47657 * 210.00166 * 21 20 19 40 40 H 1.09000 * 109.47430 * 330.00629 * 21 20 19 41 41 H 0.96704 * 114.00264 * 89.99669 * 24 23 22 42 42 H 0.96703 * 113.99718 * 270.29242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5664 1.2746 0.0006 6 7 3.9819 2.6796 -0.0002 7 6 4.3135 3.2956 -1.1791 8 1 4.0352 4.3256 -1.3471 9 6 5.0077 2.5950 -2.1579 10 7 4.9611 2.9940 -3.4092 11 14 6.0069 1.0863 -1.6951 12 1 5.1945 -0.1353 -1.9256 13 1 7.2336 1.0298 -2.5301 14 1 6.3871 1.1648 -0.2618 15 6 4.0381 3.3662 1.1582 16 8 3.7452 2.8209 2.2013 17 6 4.4649 4.8115 1.1574 18 6 4.4436 5.3504 2.5892 19 6 4.8698 6.7959 2.5883 20 6 3.9386 7.8075 2.4455 21 6 2.4760 7.4804 2.2884 22 7 4.3465 9.0677 2.4494 23 6 5.6281 9.3667 2.5872 24 8 6.0062 10.6674 2.5868 25 7 6.5493 8.4277 2.7263 26 6 6.2112 7.1437 2.7377 27 8 7.1574 6.1850 2.8863 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 3.9564 0.7804 -0.8892 32 1 3.9558 0.7807 0.8907 33 1 5.4460 2.5051 -4.0924 34 1 5.4744 4.8919 0.7543 35 1 3.7798 5.3924 0.5400 36 1 3.4342 5.2699 2.9926 37 1 5.1289 4.7695 3.2063 38 1 2.0058 7.4373 3.2708 39 1 1.9936 8.2518 1.6882 40 1 2.3707 6.5154 1.7926 41 1 6.0147 11.0749 3.4638 42 1 7.5376 5.8752 2.0528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321994235.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:47 Heat of formation + Delta-G solvation = -164.979238 kcal Electronic energy + Delta-G solvation = -30006.744425 eV Core-core repulsion = 25566.847509 eV Total energy + Delta-G solvation = -4439.896917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.54985 -41.69267 -40.44215 -39.29524 -38.14704 -37.58385 -36.76937 -35.71657 -34.34392 -34.00769 -31.67464 -30.43625 -29.36717 -27.94887 -27.00388 -25.67407 -24.05405 -23.24797 -22.30059 -20.90774 -20.37271 -19.66885 -19.23899 -18.97937 -18.84395 -18.32816 -17.45163 -17.09561 -17.02318 -16.90277 -16.55807 -16.21563 -15.88599 -15.27452 -14.93827 -14.87056 -14.68231 -14.53623 -14.39842 -14.06325 -13.83391 -13.55856 -13.49967 -13.44702 -13.30441 -13.09707 -12.96544 -12.76425 -12.63617 -12.36796 -12.03738 -11.92057 -11.86115 -11.80006 -11.66996 -11.49718 -11.16555 -10.62961 -10.39398 -10.08815 -9.90237 -8.53250 -6.19527 -0.42158 -0.21872 1.15317 1.22445 1.35340 1.45255 1.52148 1.83620 1.98746 2.17017 2.22257 2.52456 2.63426 2.95576 3.19978 3.57992 3.71404 3.89477 3.94194 3.98152 4.16421 4.18118 4.22568 4.31640 4.31993 4.38534 4.45825 4.66005 4.66231 4.71373 4.78015 4.89322 5.08888 5.10322 5.22639 5.31733 5.37083 5.67751 6.03797 6.14505 6.40417 6.49248 6.73457 6.82244 6.89788 7.29130 7.65894 8.60394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.003496 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.659204 B = 8006.633801 C = 9048.884824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.452 3.548 4 O -0.523 6.523 5 C 0.100 3.900 6 N -0.460 5.460 7 C -0.345 4.345 8 H 0.082 0.918 9 C 0.029 3.971 10 N -0.891 5.891 11 Si 0.913 3.087 12 H -0.253 1.253 13 H -0.280 1.280 14 H -0.247 1.247 15 C 0.492 3.508 16 O -0.603 6.603 17 C -0.104 4.104 18 C -0.040 4.040 19 C -0.205 4.205 20 C 0.211 3.789 21 C -0.111 4.111 22 N -0.542 5.542 23 C 0.508 3.492 24 O -0.462 6.462 25 N -0.572 5.572 26 C 0.386 3.614 27 O -0.475 6.475 28 H 0.056 0.944 29 H 0.139 0.861 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.126 0.874 33 H 0.282 0.718 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.432 0.568 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.779 2.037 9.836 10.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C 0.293 3.707 4 O -0.411 6.411 5 C -0.025 4.025 6 N -0.181 5.181 7 C -0.472 4.472 8 H 0.099 0.901 9 C -0.176 4.176 10 N -0.527 5.527 11 Si 0.736 3.264 12 H -0.178 1.178 13 H -0.206 1.206 14 H -0.171 1.171 15 C 0.284 3.716 16 O -0.488 6.488 17 C -0.143 4.143 18 C -0.078 4.078 19 C -0.211 4.211 20 C 0.067 3.933 21 C -0.168 4.168 22 N -0.270 5.270 23 C 0.203 3.797 24 O -0.268 6.268 25 N -0.309 5.309 26 C 0.199 3.801 27 O -0.285 6.285 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.295 0.705 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -1.813 3.021 10.126 10.721 hybrid contribution 0.327 -1.051 -0.562 1.236 sum -1.486 1.970 9.564 9.877 Atomic orbital electron populations 1.23548 0.74901 1.05810 1.02222 1.86491 1.25138 1.32537 1.84092 1.24664 0.92923 0.81612 0.71452 1.90582 1.67279 1.37469 1.45778 1.21502 0.87393 0.87944 1.05698 1.43481 1.58590 1.08919 1.07140 1.18881 1.36802 0.99333 0.92167 0.90080 1.25954 0.96620 1.00847 0.94186 1.69851 1.39459 1.42481 1.00888 0.86317 0.79611 0.80055 0.80408 1.17821 1.20597 1.17068 1.20928 0.78535 0.90115 0.82015 1.90550 1.54323 1.71888 1.32083 1.21285 1.03981 0.91402 0.97641 1.20044 1.03662 0.88153 0.95984 1.21614 0.93867 0.99184 1.06447 1.21740 0.98403 0.85672 0.87493 1.20988 0.86895 1.03735 1.05181 1.67911 1.17658 1.22528 1.18892 1.19979 0.83091 0.85926 0.90714 1.84682 1.88152 1.16852 1.37143 1.67421 1.41433 1.02113 1.19942 1.19064 0.87173 0.84957 0.88928 1.84626 1.55253 1.51261 1.37387 0.92500 0.84289 0.92166 0.87232 0.85634 0.90835 0.88441 0.89614 0.89406 0.89511 0.87130 0.88820 0.89598 0.70485 0.70858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.90 16 2 O -0.37 -12.38 10.56 -51.39 -0.54 -12.92 16 3 C 0.45 18.57 7.98 71.23 0.57 19.14 16 4 O -0.52 -24.38 16.01 21.98 0.35 -24.03 16 5 C 0.10 4.07 4.49 85.63 0.38 4.45 16 6 N -0.46 -20.48 1.74 -639.58 -1.11 -21.59 16 7 C -0.34 -16.82 9.05 84.04 0.76 -16.06 16 8 H 0.08 4.29 7.24 -2.91 -0.02 4.27 16 9 C 0.03 1.43 5.27 84.93 0.45 1.87 16 10 N -0.89 -46.80 13.96 21.67 0.30 -46.50 16 11 Si 0.91 36.48 25.01 68.60 1.72 38.19 16 12 H -0.25 -9.37 6.71 99.48 0.67 -8.71 16 13 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 15 C 0.49 20.55 7.37 87.66 0.65 21.19 16 16 O -0.60 -26.68 15.68 -3.08 -0.05 -26.73 16 17 C -0.10 -3.51 4.27 29.85 0.13 -3.39 16 18 C -0.04 -1.14 3.79 29.85 0.11 -1.03 16 19 C -0.21 -5.61 5.18 -19.59 -0.10 -5.71 16 20 C 0.21 5.60 6.82 42.46 0.29 5.89 16 21 C -0.11 -2.39 9.44 71.23 0.67 -1.71 16 22 N -0.54 -15.21 10.40 -301.71 -3.14 -18.34 16 23 C 0.51 14.17 8.71 180.58 1.57 15.75 16 24 O -0.46 -10.41 13.64 -87.50 -1.19 -11.60 16 25 N -0.57 -16.87 10.49 -426.38 -4.47 -21.34 16 26 C 0.39 10.79 7.81 84.83 0.66 11.45 16 27 O -0.47 -11.70 12.74 -88.10 -1.12 -12.82 16 28 H 0.06 1.47 8.13 -2.38 -0.02 1.45 16 29 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.06 1.50 8.13 -2.39 -0.02 1.49 16 31 H 0.11 4.40 3.66 -2.39 -0.01 4.39 16 32 H 0.13 4.65 7.64 -2.39 -0.02 4.63 16 33 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 34 H 0.10 3.14 8.10 -2.39 -0.02 3.12 16 35 H 0.09 2.98 7.00 -2.39 -0.02 2.97 16 36 H 0.09 2.49 6.76 -2.39 -0.02 2.48 16 37 H 0.09 2.57 7.58 -2.39 -0.02 2.55 16 38 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 2.00 6.04 -2.39 -0.01 1.99 16 41 H 0.43 4.69 9.06 -74.05 -0.67 4.02 16 42 H 0.43 7.18 9.06 -74.06 -0.67 6.51 16 Total: -1.00 -70.91 363.00 -2.18 -73.08 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -0.26 Total: 30.84 kcal Atomic # 6 Polarization: 46.42 SS G_CDS: 7.34 Total: 53.76 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -8.42 Total: -107.77 kcal Atomic # 8 Polarization: -85.55 SS G_CDS: -2.55 Total: -88.11 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 1.72 Total: 38.19 kcal Total: -70.91 -2.18 -73.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321994235.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.895 kcal (2) G-P(sol) polarization free energy of solvation -70.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds