Wall clock time and date at job start Tue Mar 31 2020 22:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86794 * 120.00470 * 2 1 4 4 H 1.48509 * 109.46975 * 270.00007 * 3 2 1 5 5 H 1.48492 * 109.47296 * 29.99732 * 3 2 1 6 6 H 1.48501 * 109.47589 * 150.00171 * 3 2 1 7 7 C 1.38956 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00151 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99984 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00139 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00018 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47114 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46635 * 294.99938 * 15 14 13 17 17 N 1.46493 * 109.47254 * 54.99893 * 15 14 13 18 18 C 1.34775 * 120.00077 * 204.99876 * 17 15 14 19 19 O 1.21565 * 120.00093 * 0.02562 * 18 17 15 20 20 C 1.47757 * 119.99965 * 180.02562 * 18 17 15 21 21 C 1.39349 * 124.11419 * 180.02562 * 20 18 17 22 22 N 1.30093 * 112.14205 * 180.02562 * 21 20 18 23 23 S 1.55918 * 108.75758 * 359.97438 * 22 21 20 24 24 N 1.31494 * 124.11639 * 0.02562 * 20 18 17 25 25 C 1.53006 * 109.46966 * 175.00147 * 15 14 13 26 26 C 1.52998 * 117.49614 * 248.74574 * 25 15 14 27 27 C 1.52998 * 117.49658 * 180.08554 * 25 15 14 28 28 H 0.96998 * 119.99822 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00276 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47634 * 59.99919 * 12 10 9 31 31 H 1.09002 * 109.47411 * 299.99549 * 12 10 9 32 32 H 1.00898 * 111.00369 * 303.95358 * 13 12 10 33 33 H 1.09002 * 109.47233 * 59.99740 * 14 13 12 34 34 H 1.09002 * 109.47221 * 299.99756 * 14 13 12 35 35 H 0.97009 * 120.00128 * 25.00389 * 17 15 14 36 36 H 1.08000 * 123.92857 * 359.97438 * 21 20 18 37 37 H 1.08995 * 115.54878 * 34.41853 * 25 15 14 38 38 H 1.08997 * 117.49932 * 359.97438 * 26 25 15 39 39 H 1.09000 * 117.49530 * 145.02431 * 26 25 15 40 40 H 1.09005 * 117.49952 * 214.97932 * 27 25 15 41 41 H 1.08997 * 117.49830 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4457 2.6526 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2100 -3.5581 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9796 0.0016 14 6 1.4977 -7.2709 0.0028 15 6 2.5225 -8.4070 0.0039 16 1 3.0884 -8.3866 -0.9275 17 7 3.4378 -8.2378 1.1352 18 6 4.6767 -8.7659 1.0844 19 8 5.0349 -9.3822 0.0997 20 6 5.5997 -8.5958 2.2257 21 6 6.8966 -9.1041 2.2644 22 7 7.5022 -8.8181 3.3797 23 16 6.5320 -7.9938 4.2800 24 7 5.2972 -7.9464 3.3283 25 6 1.7971 -9.7481 0.1309 26 6 1.9759 -10.5273 1.4354 27 6 2.6540 -11.0154 0.1528 28 1 -0.4850 0.8400 -0.0004 29 1 0.3532 -2.3907 0.0005 30 1 0.6164 -4.9210 -0.8886 31 1 0.6172 -4.9206 0.8914 32 1 2.8329 -5.9130 -0.7797 33 1 0.8724 -7.3460 -0.8869 34 1 0.8731 -7.3447 0.8931 35 1 3.1521 -7.7458 1.9209 36 1 7.3464 -9.6703 1.4623 37 1 0.8260 -9.8056 -0.3607 38 1 2.6107 -10.0846 2.2030 39 1 1.1225 -11.0978 1.8019 40 1 2.2464 -11.9069 -0.3240 41 1 3.7345 -10.8938 0.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322959509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:39 Heat of formation + Delta-G solvation = 23.126932 kcal Electronic energy + Delta-G solvation = -26480.335855 eV Core-core repulsion = 22523.641456 eV Total energy + Delta-G solvation = -3956.694399 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37121 -39.87591 -38.30039 -37.38500 -35.55618 -34.23450 -33.86921 -33.21030 -31.24720 -29.80898 -27.61760 -26.31758 -24.23497 -23.46154 -22.66177 -22.09439 -20.79114 -20.14858 -19.55221 -19.24777 -17.98389 -17.78637 -16.77277 -16.55563 -15.98448 -15.89259 -15.52851 -15.13425 -14.78736 -14.55936 -14.26617 -14.03160 -13.72590 -13.40941 -13.36240 -12.89690 -12.47372 -12.15266 -11.97103 -11.76827 -11.60095 -11.56545 -11.52774 -11.49836 -11.34408 -11.24726 -11.05192 -10.56694 -10.40687 -10.24276 -10.20390 -10.05671 -9.52404 -9.44406 -9.08962 -8.50131 -8.12291 -7.97725 -6.43374 -3.84115 0.21941 1.17048 1.33312 1.39832 2.88724 2.99273 3.16631 3.25423 3.31376 3.66636 3.89059 4.00082 4.21657 4.28127 4.61549 4.70875 4.76230 4.83181 4.89862 5.02850 5.11686 5.19564 5.22854 5.23193 5.38341 5.51914 5.56435 5.74850 5.78606 5.81318 5.93857 5.98129 6.14247 6.18794 6.23298 6.36311 7.10974 7.39062 7.53730 7.57000 7.99300 8.04653 8.59639 9.16463 9.52659 10.04161 10.74400 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.002723 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.813056 B =10280.011989 C =12196.749132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.667 5.667 14 C 0.051 3.949 15 C 0.179 3.821 16 H 0.095 0.905 17 N -0.681 5.681 18 C 0.607 3.393 19 O -0.527 6.527 20 C 0.013 3.987 21 C 0.088 3.912 22 N -0.581 5.581 23 S 0.720 5.280 24 N -0.539 5.539 25 C -0.167 4.167 26 C -0.177 4.177 27 C -0.183 4.183 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.351 0.649 33 H 0.047 0.953 34 H 0.080 0.920 35 H 0.416 0.584 36 H 0.213 0.787 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 -21.290 5.828 22.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.467 6.467 12 C -0.081 4.081 13 N -0.300 5.300 14 C -0.079 4.079 15 C 0.074 3.926 16 H 0.113 0.887 17 N -0.331 5.331 18 C 0.388 3.612 19 O -0.404 6.404 20 C -0.163 4.163 21 C -0.105 4.105 22 N -0.422 5.422 23 S 0.762 5.238 24 N -0.389 5.389 25 C -0.187 4.187 26 C -0.214 4.214 27 C -0.220 4.220 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.170 0.830 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.230 0.770 37 H 0.130 0.870 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.218 -20.721 7.733 22.724 hybrid contribution -1.053 0.469 -2.196 2.481 sum 4.164 -20.252 5.537 21.404 Atomic orbital electron populations 1.69607 1.05938 1.28166 1.50621 1.25255 0.95630 0.99713 0.97311 0.85862 0.79262 0.80812 0.78391 1.20417 1.20906 1.19405 1.19698 0.93355 0.82247 1.47590 0.87967 1.41859 1.09181 1.04599 1.64385 1.19799 0.88391 0.84715 0.84526 1.90534 1.13749 1.87042 1.55328 1.21669 0.94274 0.90908 1.01272 1.60042 1.18715 0.99629 1.51578 1.22239 0.95116 0.88690 1.01827 1.20546 0.89733 0.92086 0.90231 0.88721 1.45640 1.12329 1.54147 1.21008 1.16694 0.81108 0.79270 0.84143 1.90758 1.75974 1.41992 1.31698 1.22518 0.96804 1.02153 0.94791 1.23762 0.90733 1.00225 0.95822 1.72253 1.37708 1.21350 1.10856 1.79130 0.88104 1.33921 1.22672 1.72475 1.35028 1.22090 1.09259 1.22686 1.00983 0.92293 1.02750 1.22933 1.03253 1.03682 0.91515 1.23355 1.01242 0.96766 1.00649 0.91867 0.77476 0.93766 0.89553 0.82971 0.93537 0.90167 0.74673 0.77035 0.86969 0.88934 0.89171 0.89335 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.69 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 8 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.21 7.82 -10.99 -0.09 10.13 16 11 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 13 N -0.67 -10.01 5.85 -115.05 -0.67 -10.68 16 14 C 0.05 0.56 5.23 -3.82 -0.02 0.54 16 15 C 0.18 1.92 2.67 -67.93 -0.18 1.73 16 16 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 17 N -0.68 -7.89 3.33 -54.78 -0.18 -8.07 16 18 C 0.61 7.61 6.66 -12.37 -0.08 7.53 16 19 O -0.53 -7.36 13.83 5.31 0.07 -7.28 16 20 C 0.01 0.15 6.81 -83.71 -0.57 -0.42 16 21 C 0.09 0.92 11.22 -17.87 -0.20 0.72 16 22 N -0.58 -6.08 11.41 19.43 0.22 -5.86 16 23 S 0.72 6.44 23.69 -107.50 -2.55 3.89 16 24 N -0.54 -6.16 11.00 23.18 0.26 -5.90 16 25 C -0.17 -1.55 5.71 -90.62 -0.52 -2.06 16 26 C -0.18 -1.62 9.74 -26.69 -0.26 -1.88 16 27 C -0.18 -1.80 9.82 -26.69 -0.26 -2.06 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.35 5.72 8.43 -39.29 -0.33 5.39 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.42 4.96 8.19 -40.82 -0.33 4.63 16 36 H 0.21 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.09 0.92 6.67 -51.93 -0.35 0.57 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.12 1.38 5.01 -51.93 -0.26 1.12 16 LS Contribution 365.40 15.07 5.51 5.51 Total: -1.00 -32.47 365.40 -8.95 -41.41 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -4.88 Total: 17.39 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -2.45 Total: 7.09 kcal Atomic # 7 Polarization: -68.68 SS G_CDS: 0.29 Total: -68.39 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.16 Total: -22.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -2.55 Total: 3.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.47 -8.95 -41.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322959509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.540 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds