Wall clock time and date at job start Tue Mar 31 2020 22:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86794 * 120.00470 * 2 1 4 4 H 1.48509 * 109.46975 * 270.00007 * 3 2 1 5 5 H 1.48492 * 109.47296 * 29.99732 * 3 2 1 6 6 H 1.48501 * 109.47589 * 150.00171 * 3 2 1 7 7 C 1.38956 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00149 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99812 * 0.02562 * 7 2 1 10 10 C 1.34779 * 120.00151 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99984 * 359.97438 * 10 9 7 12 12 C 1.50695 * 120.00139 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47066 * 180.02562 * 12 10 9 14 14 C 1.46901 * 111.00018 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47114 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.46635 * 294.99938 * 15 14 13 17 17 N 1.46493 * 109.47254 * 54.99893 * 15 14 13 18 18 C 1.34775 * 120.00077 * 204.99876 * 17 15 14 19 19 O 1.21565 * 120.00093 * 0.02562 * 18 17 15 20 20 C 1.47757 * 119.99965 * 180.02562 * 18 17 15 21 21 C 1.39349 * 124.11419 * 180.02562 * 20 18 17 22 22 N 1.30093 * 112.14205 * 180.02562 * 21 20 18 23 23 S 1.55918 * 108.75758 * 359.97438 * 22 21 20 24 24 N 1.31494 * 124.11639 * 0.02562 * 20 18 17 25 25 C 1.53006 * 109.46966 * 175.00147 * 15 14 13 26 26 C 1.52998 * 117.49614 * 248.74574 * 25 15 14 27 27 C 1.52998 * 117.49658 * 180.08554 * 25 15 14 28 28 H 0.96998 * 119.99822 * 0.02562 * 1 2 3 29 29 H 0.97002 * 120.00276 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47634 * 59.99919 * 12 10 9 31 31 H 1.09002 * 109.47411 * 299.99549 * 12 10 9 32 32 H 1.00898 * 111.00369 * 303.95358 * 13 12 10 33 33 H 1.09002 * 109.47233 * 59.99740 * 14 13 12 34 34 H 1.09002 * 109.47221 * 299.99756 * 14 13 12 35 35 H 0.97009 * 120.00128 * 25.00389 * 17 15 14 36 36 H 1.08000 * 123.92857 * 359.97438 * 21 20 18 37 37 H 1.08995 * 115.54878 * 34.41853 * 25 15 14 38 38 H 1.08997 * 117.49932 * 359.97438 * 26 25 15 39 39 H 1.09000 * 117.49530 * 145.02431 * 26 25 15 40 40 H 1.09005 * 117.49952 * 214.97932 * 27 25 15 41 41 H 1.08997 * 117.49830 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4457 2.6526 0.6999 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5580 0.0005 11 8 3.2100 -3.5581 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9796 0.0016 14 6 1.4977 -7.2709 0.0028 15 6 2.5225 -8.4070 0.0039 16 1 3.0884 -8.3866 -0.9275 17 7 3.4378 -8.2378 1.1352 18 6 4.6767 -8.7659 1.0844 19 8 5.0349 -9.3822 0.0997 20 6 5.5997 -8.5958 2.2257 21 6 6.8966 -9.1041 2.2644 22 7 7.5022 -8.8181 3.3797 23 16 6.5320 -7.9938 4.2800 24 7 5.2972 -7.9464 3.3283 25 6 1.7971 -9.7481 0.1309 26 6 1.9759 -10.5273 1.4354 27 6 2.6540 -11.0154 0.1528 28 1 -0.4850 0.8400 -0.0004 29 1 0.3532 -2.3907 0.0005 30 1 0.6164 -4.9210 -0.8886 31 1 0.6172 -4.9206 0.8914 32 1 2.8329 -5.9130 -0.7797 33 1 0.8724 -7.3460 -0.8869 34 1 0.8731 -7.3447 0.8931 35 1 3.1521 -7.7458 1.9209 36 1 7.3464 -9.6703 1.4623 37 1 0.8260 -9.8056 -0.3607 38 1 2.6107 -10.0846 2.2030 39 1 1.1225 -11.0978 1.8019 40 1 2.2464 -11.9069 -0.3240 41 1 3.7345 -10.8938 0.0763 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322959509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:38 Heat of formation + Delta-G solvation = -2.482552 kcal Electronic energy + Delta-G solvation = -26481.446365 eV Core-core repulsion = 22523.641456 eV Total energy + Delta-G solvation = -3957.804910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.22351 -40.76172 -40.08835 -38.32156 -36.69839 -35.85169 -35.08010 -34.16962 -33.25350 -30.88964 -28.58842 -27.77040 -25.87292 -24.36088 -23.51024 -22.96567 -21.66836 -21.18986 -20.85489 -20.32183 -19.90285 -18.78413 -17.92132 -17.55664 -17.32904 -16.80969 -16.58972 -16.39117 -16.22591 -15.94042 -15.58402 -15.17711 -14.94632 -14.78868 -14.61149 -14.04038 -13.67773 -13.44674 -13.25164 -13.06339 -12.79357 -12.76502 -12.59767 -12.42883 -12.41805 -12.34421 -12.17038 -12.12891 -12.08179 -11.50654 -11.36503 -11.06784 -10.85268 -10.34550 -10.24448 -10.00963 -9.96649 -9.32926 -8.46907 -5.95248 -0.62547 0.37207 0.47728 0.63484 1.37346 1.41298 1.53715 1.98886 2.06855 2.09636 2.28678 2.81314 3.00703 3.20843 3.41898 3.51192 3.73649 3.81269 3.99230 4.06878 4.08605 4.28215 4.30581 4.40068 4.46983 4.48237 4.58133 4.64329 4.71240 4.85733 4.94538 5.05264 5.24556 5.32932 5.40300 5.40759 5.48862 5.86887 6.09150 6.34110 6.45414 6.60827 7.06275 7.13280 7.57437 8.13260 8.70501 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.002723 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.813056 B =10280.011989 C =12196.749132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.990 3.010 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.334 4.334 8 H 0.076 0.924 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.625 6.625 12 C 0.067 3.933 13 N -0.680 5.680 14 C 0.058 3.942 15 C 0.180 3.820 16 H 0.079 0.921 17 N -0.678 5.678 18 C 0.604 3.396 19 O -0.548 6.548 20 C -0.006 4.006 21 C 0.086 3.914 22 N -0.597 5.597 23 S 0.781 5.219 24 N -0.562 5.562 25 C -0.160 4.160 26 C -0.171 4.171 27 C -0.192 4.192 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.070 0.930 31 H 0.108 0.892 32 H 0.341 0.659 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.415 0.585 36 H 0.226 0.774 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.748 -21.716 6.336 22.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.094 0.906 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.511 6.511 12 C -0.065 4.065 13 N -0.312 5.312 14 C -0.071 4.071 15 C 0.076 3.924 16 H 0.097 0.903 17 N -0.328 5.328 18 C 0.385 3.615 19 O -0.427 6.427 20 C -0.179 4.179 21 C -0.106 4.106 22 N -0.439 5.439 23 S 0.823 5.177 24 N -0.414 5.414 25 C -0.180 4.180 26 C -0.208 4.208 27 C -0.229 4.229 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.159 0.841 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.252 0.748 36 H 0.242 0.758 37 H 0.152 0.848 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.015 -21.172 8.233 23.069 hybrid contribution -0.644 0.568 -2.274 2.431 sum 3.372 -20.604 5.959 21.712 Atomic orbital electron populations 1.69661 1.06751 1.29271 1.50371 1.25995 0.96526 1.02290 0.96323 0.84966 0.77910 0.77077 0.78630 1.19683 1.19463 1.19906 1.19636 0.92613 0.84156 1.49932 0.90563 1.41923 1.09324 1.04677 1.65139 1.20962 0.88260 0.86285 0.82043 1.90504 1.16019 1.87996 1.56610 1.21526 0.93846 0.87722 1.03407 1.60027 1.18957 1.00823 1.51417 1.22297 0.95005 0.86333 1.03463 1.20557 0.89499 0.93093 0.89288 0.90338 1.45665 1.12263 1.53759 1.21088 1.16850 0.81430 0.79022 0.84201 1.90742 1.76410 1.42951 1.32550 1.22451 0.97264 1.03294 0.94901 1.23905 0.90367 1.00150 0.96173 1.72192 1.38449 1.22076 1.11216 1.78851 0.86325 1.31748 1.20810 1.72325 1.36712 1.22591 1.09752 1.22685 1.01377 0.90949 1.02982 1.22943 1.03360 1.03441 0.91028 1.23308 1.00211 0.97692 1.01666 0.91294 0.76923 0.91261 0.87389 0.84093 0.91384 0.88723 0.74827 0.75802 0.84836 0.90012 0.87547 0.88060 0.88660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 42.85 29.55 68.60 2.03 44.88 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 9 N -0.57 -28.97 5.29 -306.98 -1.62 -30.59 16 10 C 0.44 20.31 7.82 87.66 0.69 21.00 16 11 O -0.62 -34.42 15.78 -3.08 -0.05 -34.47 16 12 C 0.07 2.13 6.17 85.56 0.53 2.66 16 13 N -0.68 -19.57 5.85 -517.92 -3.03 -22.60 16 14 C 0.06 1.13 5.23 86.30 0.45 1.58 16 15 C 0.18 3.67 2.67 45.00 0.12 3.79 16 16 H 0.08 1.88 7.58 -2.39 -0.02 1.86 16 17 N -0.68 -15.56 3.33 -445.49 -1.49 -17.05 16 18 C 0.60 15.40 6.66 86.76 0.58 15.98 16 19 O -0.55 -15.74 13.83 -3.92 -0.05 -15.79 16 20 C -0.01 -0.13 6.81 41.98 0.29 0.15 16 21 C 0.09 1.79 11.22 85.22 0.96 2.75 16 22 N -0.60 -12.11 11.41 -92.45 -1.05 -13.16 16 23 S 0.78 13.26 23.69 -56.49 -1.34 11.92 16 24 N -0.56 -12.67 11.00 -80.58 -0.89 -13.56 16 25 C -0.16 -2.65 5.71 -10.79 -0.06 -2.72 16 26 C -0.17 -2.84 9.74 30.62 0.30 -2.54 16 27 C -0.19 -3.58 9.82 30.62 0.30 -3.28 16 28 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 29 H 0.40 18.92 7.90 -92.71 -0.73 18.19 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.34 11.02 8.43 -89.70 -0.76 10.26 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 9.72 8.19 -92.70 -0.76 8.96 16 36 H 0.23 3.81 8.06 -2.91 -0.02 3.78 16 37 H 0.13 1.67 8.11 -2.39 -0.02 1.65 16 38 H 0.08 1.56 6.67 -2.39 -0.02 1.54 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.10 2.27 5.01 -2.39 -0.01 2.25 16 Total: -1.00 -70.83 365.40 -2.91 -73.74 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -1.12 Total: 44.48 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 5.42 Total: 21.13 kcal Atomic # 7 Polarization: -138.08 SS G_CDS: -7.80 Total: -145.88 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -0.10 Total: -50.26 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 13.26 SS G_CDS: -1.34 Total: 11.92 kcal Total: -70.83 -2.91 -73.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322959509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.254 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds