Wall clock time and date at job start Tue Mar 31 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00136 * 2 1 4 4 H 1.48499 * 109.46851 * 239.99567 * 3 2 1 5 5 H 1.48500 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47021 * 120.00045 * 3 2 1 7 7 C 1.38957 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99582 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.34767 * 119.99863 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00411 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00353 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47580 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00488 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47819 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47163 * 64.99978 * 15 14 13 17 17 N 1.46506 * 109.47100 * 304.99878 * 15 14 13 18 18 C 1.34773 * 119.99969 * 154.71955 * 17 15 14 19 19 O 1.21564 * 119.99935 * 0.02562 * 18 17 15 20 20 C 1.47756 * 120.00087 * 179.97438 * 18 17 15 21 21 C 1.39341 * 124.11863 * 179.72507 * 20 18 17 22 22 N 1.30098 * 112.14782 * 179.85348 * 21 20 18 23 23 S 1.55927 * 108.75100 * 0.40169 * 22 21 20 24 24 N 1.31490 * 124.11333 * 0.03121 * 20 18 17 25 25 C 1.52997 * 109.47602 * 185.00126 * 15 14 13 26 26 C 1.53000 * 117.49897 * 248.74886 * 25 15 14 27 27 C 1.53006 * 117.50330 * 180.08667 * 25 15 14 28 28 H 0.96997 * 119.99839 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99579 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46727 * 59.99597 * 12 10 9 31 31 H 1.08997 * 109.46661 * 300.00253 * 12 10 9 32 32 H 1.00909 * 111.00193 * 303.95579 * 13 12 10 33 33 H 1.09002 * 109.47053 * 59.99345 * 14 13 12 34 34 H 1.09004 * 109.47118 * 300.00189 * 14 13 12 35 35 H 0.97005 * 119.99811 * 335.00008 * 17 15 14 36 36 H 1.07998 * 123.93010 * 0.02562 * 21 20 18 37 37 H 1.09000 * 115.55214 * 34.41012 * 25 15 14 38 38 H 1.09000 * 117.50268 * 359.97438 * 26 25 15 39 39 H 1.09007 * 117.50040 * 145.01782 * 26 25 15 40 40 H 1.08994 * 117.49645 * 214.98137 * 27 25 15 41 41 H 1.09000 * 117.49025 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 1.4980 -7.2708 -0.0005 15 6 2.5227 -8.4068 -0.0004 16 1 3.0885 -8.3857 0.9310 17 7 3.4382 -8.2389 -1.1318 18 6 4.6790 -8.7620 -1.0781 19 8 5.0385 -9.3737 -0.0910 20 6 5.6021 -8.5931 -2.2194 21 6 6.9026 -9.0923 -2.2534 22 7 7.5066 -8.8118 -3.3709 23 16 6.5341 -7.9942 -4.2748 24 7 5.2982 -7.9485 -3.3244 25 6 1.7975 -9.7481 -0.1261 26 6 1.8126 -10.6761 1.0902 27 6 2.6541 -11.0158 -0.1426 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6174 -4.9205 -0.8902 31 1 0.6167 -4.9209 0.8897 32 1 2.8331 -5.9121 -0.7819 33 1 0.8727 -7.3451 -0.8903 34 1 0.8733 -7.3454 0.8897 35 1 3.1525 -7.7476 -1.9180 36 1 7.3555 -9.6499 -1.4469 37 1 0.8982 -9.7404 -0.7420 38 1 2.3396 -10.3313 1.9799 39 1 0.9234 -11.2793 1.2743 40 1 2.3182 -11.8420 -0.7691 41 1 3.7345 -10.8940 -0.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322959510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:41 Heat of formation + Delta-G solvation = 20.315484 kcal Electronic energy + Delta-G solvation = -26349.104905 eV Core-core repulsion = 22392.288593 eV Total energy + Delta-G solvation = -3956.816313 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39949 -39.80771 -38.30435 -37.46890 -35.70943 -34.32033 -33.87954 -33.32423 -31.24319 -29.73587 -27.66963 -26.31479 -24.23883 -23.54367 -22.44208 -22.10216 -20.83234 -20.51644 -19.65119 -19.29677 -18.07968 -17.79886 -16.63723 -16.37983 -16.19033 -15.67927 -15.54896 -15.33791 -14.98338 -14.54161 -14.30405 -14.22178 -13.80986 -13.50887 -13.26419 -12.61874 -12.52624 -12.02477 -11.96461 -11.82616 -11.73821 -11.57864 -11.51631 -11.43130 -11.40373 -11.31528 -11.02392 -10.55862 -10.45366 -10.39013 -10.22675 -10.15338 -9.51316 -9.50226 -9.19820 -8.49321 -8.11630 -7.97552 -6.43031 -3.83882 0.15119 1.10534 1.27946 1.34078 2.78422 2.90136 3.19220 3.24941 3.29417 3.71082 3.88966 3.99366 4.20696 4.22480 4.54584 4.68177 4.75732 4.83224 4.91258 4.99246 5.03217 5.18710 5.20808 5.23003 5.35074 5.56147 5.58376 5.69248 5.77178 5.85181 5.94030 6.02729 6.08749 6.13649 6.23650 6.30953 7.11053 7.23943 7.53806 7.56188 7.89794 8.04616 8.59850 9.16507 9.52702 10.04274 10.74642 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.002755 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.203434 B =10161.847205 C =12361.836754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.563 5.563 10 C 0.440 3.560 11 O -0.583 6.583 12 C 0.050 3.950 13 N -0.668 5.668 14 C 0.054 3.946 15 C 0.178 3.822 16 H 0.104 0.896 17 N -0.696 5.696 18 C 0.613 3.387 19 O -0.521 6.521 20 C 0.012 3.988 21 C 0.090 3.910 22 N -0.580 5.580 23 S 0.723 5.277 24 N -0.544 5.544 25 C -0.172 4.172 26 C -0.167 4.167 27 C -0.183 4.183 28 H 0.272 0.728 29 H 0.392 0.608 30 H 0.044 0.956 31 H 0.088 0.912 32 H 0.348 0.652 33 H 0.034 0.966 34 H 0.091 0.909 35 H 0.407 0.593 36 H 0.214 0.786 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -21.461 -6.879 22.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.199 5.199 10 C 0.225 3.775 11 O -0.467 6.467 12 C -0.082 4.082 13 N -0.301 5.301 14 C -0.076 4.076 15 C 0.074 3.926 16 H 0.121 0.879 17 N -0.347 5.347 18 C 0.393 3.607 19 O -0.397 6.397 20 C -0.163 4.163 21 C -0.104 4.104 22 N -0.420 5.420 23 S 0.765 5.235 24 N -0.394 5.394 25 C -0.191 4.191 26 C -0.204 4.204 27 C -0.219 4.219 28 H 0.082 0.918 29 H 0.225 0.775 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.242 0.758 36 H 0.231 0.769 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.291 -20.903 -7.414 22.801 hybrid contribution -1.045 0.452 0.324 1.184 sum 4.246 -20.451 -7.091 22.058 Atomic orbital electron populations 1.69602 1.05934 1.28283 1.50514 1.25258 0.95631 0.99708 0.97270 0.85919 0.78774 0.80446 0.79097 1.19924 1.20955 1.19854 1.19656 0.93345 0.82253 1.47735 0.88000 1.41843 1.09182 1.04571 1.64333 1.19793 0.88396 0.84715 0.84593 1.90533 1.13749 1.87037 1.55369 1.21684 0.94274 0.90900 1.01348 1.60006 1.18821 0.99729 1.51527 1.22238 0.94935 0.88577 1.01831 1.20704 0.89693 0.91912 0.90260 0.87854 1.45784 1.12801 1.55230 1.20844 1.16627 0.80942 0.79029 0.84090 1.90765 1.75914 1.41579 1.31407 1.22520 0.96750 1.02365 0.94664 1.23771 0.90663 1.00133 0.95809 1.72267 1.37717 1.21362 1.10691 1.79130 0.87859 1.33983 1.22571 1.72437 1.35280 1.22356 1.09365 1.22653 1.01736 0.91265 1.03484 1.22941 1.02290 1.02532 0.92650 1.23259 1.00301 0.97412 1.00977 0.91805 0.77454 0.93799 0.89373 0.83184 0.94795 0.89025 0.75757 0.76932 0.87724 0.88375 0.88907 0.89565 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.45 13.05 55.50 0.72 -23.72 16 2 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.56 -14.20 5.29 -10.96 -0.06 -14.25 16 10 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 11 O -0.58 -15.89 15.78 5.54 0.09 -15.81 16 12 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 13 N -0.67 -10.47 6.12 -115.07 -0.70 -11.17 16 14 C 0.05 0.62 5.28 -3.83 -0.02 0.60 16 15 C 0.18 1.97 2.58 -67.93 -0.18 1.79 16 16 H 0.10 1.36 7.33 -51.93 -0.38 0.98 16 17 N -0.70 -7.84 4.33 -54.78 -0.24 -8.08 16 18 C 0.61 7.53 7.16 -12.37 -0.09 7.44 16 19 O -0.52 -7.23 13.86 5.31 0.07 -7.16 16 20 C 0.01 0.14 6.81 -83.71 -0.57 -0.43 16 21 C 0.09 0.90 11.22 -17.88 -0.20 0.70 16 22 N -0.58 -5.83 11.41 19.43 0.22 -5.61 16 23 S 0.72 6.08 23.69 -107.50 -2.55 3.53 16 24 N -0.54 -5.85 11.00 23.18 0.26 -5.59 16 25 C -0.17 -1.60 5.36 -90.62 -0.49 -2.09 16 26 C -0.17 -1.49 10.18 -26.69 -0.27 -1.76 16 27 C -0.18 -1.78 9.74 -26.69 -0.26 -2.04 16 28 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.39 9.42 7.90 -40.82 -0.32 9.09 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.35 5.74 7.28 -39.29 -0.29 5.46 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.41 4.35 7.74 -40.82 -0.32 4.03 16 36 H 0.21 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 38 H 0.10 0.92 8.05 -51.93 -0.42 0.51 16 39 H 0.09 0.70 8.14 -51.92 -0.42 0.28 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.12 1.36 5.04 -51.93 -0.26 1.10 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -32.95 366.72 -8.99 -41.94 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -4.88 Total: 17.09 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.43 Total: 7.28 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: 0.20 Total: -68.44 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: 0.16 Total: -22.96 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 6.08 SS G_CDS: -2.55 Total: 3.53 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.95 -8.99 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322959510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.255 kcal (2) G-P(sol) polarization free energy of solvation -32.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds