Wall clock time and date at job start Tue Mar 31 2020 22:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86801 * 120.00136 * 2 1 4 4 H 1.48499 * 109.46851 * 239.99567 * 3 2 1 5 5 H 1.48500 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47021 * 120.00045 * 3 2 1 7 7 C 1.38957 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99582 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.34767 * 119.99863 * 179.97438 * 9 7 2 11 11 O 1.21300 * 120.00411 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00353 * 180.02562 * 10 9 7 13 13 N 1.46890 * 109.47580 * 179.97438 * 12 10 9 14 14 C 1.46895 * 111.00488 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.47819 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47163 * 64.99978 * 15 14 13 17 17 N 1.46506 * 109.47100 * 304.99878 * 15 14 13 18 18 C 1.34773 * 119.99969 * 154.71955 * 17 15 14 19 19 O 1.21564 * 119.99935 * 0.02562 * 18 17 15 20 20 C 1.47756 * 120.00087 * 179.97438 * 18 17 15 21 21 C 1.39341 * 124.11863 * 179.72507 * 20 18 17 22 22 N 1.30098 * 112.14782 * 179.85348 * 21 20 18 23 23 S 1.55927 * 108.75100 * 0.40169 * 22 21 20 24 24 N 1.31490 * 124.11333 * 0.03121 * 20 18 17 25 25 C 1.52997 * 109.47602 * 185.00126 * 15 14 13 26 26 C 1.53000 * 117.49897 * 248.74886 * 25 15 14 27 27 C 1.53006 * 117.50330 * 180.08667 * 25 15 14 28 28 H 0.96997 * 119.99839 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99579 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.46727 * 59.99597 * 12 10 9 31 31 H 1.08997 * 109.46661 * 300.00253 * 12 10 9 32 32 H 1.00909 * 111.00193 * 303.95579 * 13 12 10 33 33 H 1.09002 * 109.47053 * 59.99345 * 14 13 12 34 34 H 1.09004 * 109.47118 * 300.00189 * 14 13 12 35 35 H 0.97005 * 119.99811 * 335.00008 * 17 15 14 36 36 H 1.07998 * 123.93010 * 0.02562 * 21 20 18 37 37 H 1.09000 * 115.55214 * 34.41012 * 25 15 14 38 38 H 1.09000 * 117.50268 * 359.97438 * 26 25 15 39 39 H 1.09007 * 117.50040 * 145.01782 * 26 25 15 40 40 H 1.08994 * 117.49645 * 214.98137 * 27 25 15 41 41 H 1.09000 * 117.49025 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7465 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9971 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1982 -5.9795 -0.0005 14 6 1.4980 -7.2708 -0.0005 15 6 2.5227 -8.4068 -0.0004 16 1 3.0885 -8.3857 0.9310 17 7 3.4382 -8.2389 -1.1318 18 6 4.6790 -8.7620 -1.0781 19 8 5.0385 -9.3737 -0.0910 20 6 5.6021 -8.5931 -2.2194 21 6 6.9026 -9.0923 -2.2534 22 7 7.5066 -8.8118 -3.3709 23 16 6.5341 -7.9942 -4.2748 24 7 5.2982 -7.9485 -3.3244 25 6 1.7975 -9.7481 -0.1261 26 6 1.8126 -10.6761 1.0902 27 6 2.6541 -11.0158 -0.1426 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6174 -4.9205 -0.8902 31 1 0.6167 -4.9209 0.8897 32 1 2.8331 -5.9121 -0.7819 33 1 0.8727 -7.3451 -0.8903 34 1 0.8733 -7.3454 0.8897 35 1 3.1525 -7.7476 -1.9180 36 1 7.3555 -9.6499 -1.4469 37 1 0.8982 -9.7404 -0.7420 38 1 2.3396 -10.3313 1.9799 39 1 0.9234 -11.2793 1.2743 40 1 2.3182 -11.8420 -0.7691 41 1 3.7345 -10.8940 -0.0643 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322959510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:41 Heat of formation + Delta-G solvation = -6.117956 kcal Electronic energy + Delta-G solvation = -26350.251145 eV Core-core repulsion = 22392.288593 eV Total energy + Delta-G solvation = -3957.962553 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22045 -40.70493 -40.09044 -38.39997 -36.81208 -35.90777 -35.15501 -34.28778 -33.26143 -30.82202 -28.61626 -27.77791 -25.88312 -24.44973 -23.20057 -23.04925 -21.71331 -21.38807 -21.04209 -20.40502 -19.92572 -18.89798 -17.78824 -17.52242 -17.23405 -16.87337 -16.57505 -16.38868 -16.26941 -15.90552 -15.78502 -15.30749 -15.09415 -15.01486 -14.39734 -14.12108 -13.51923 -13.34836 -13.22758 -12.97661 -12.89266 -12.84405 -12.58311 -12.47535 -12.43787 -12.33092 -12.17641 -12.12999 -12.10857 -11.50862 -11.38087 -11.15681 -10.98480 -10.37759 -10.27182 -10.04384 -10.01928 -9.34593 -8.47150 -5.95803 -0.65463 0.34435 0.45447 0.61701 1.39137 1.41269 1.51951 1.92633 2.00468 2.05383 2.28493 2.81250 3.02446 3.20328 3.41479 3.45986 3.70148 3.77148 3.98322 4.03949 4.13058 4.20329 4.30097 4.33518 4.44652 4.46461 4.54288 4.62844 4.73623 4.87026 4.89310 5.07708 5.26405 5.30435 5.35337 5.40156 5.46575 5.84854 6.07442 6.31687 6.35743 6.60015 6.99598 7.12342 7.56165 8.11915 8.69974 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010367 B = 0.002755 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.203434 B =10161.847205 C =12361.836754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.991 3.009 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.571 5.571 10 C 0.435 3.565 11 O -0.626 6.626 12 C 0.065 3.935 13 N -0.686 5.686 14 C 0.060 3.940 15 C 0.182 3.818 16 H 0.078 0.922 17 N -0.693 5.693 18 C 0.609 3.391 19 O -0.544 6.544 20 C -0.006 4.006 21 C 0.087 3.913 22 N -0.598 5.598 23 S 0.787 5.213 24 N -0.564 5.564 25 C -0.165 4.165 26 C -0.161 4.161 27 C -0.190 4.190 28 H 0.278 0.722 29 H 0.397 0.603 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.341 0.659 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.410 0.590 36 H 0.226 0.774 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -21.839 -7.688 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.465 4.465 8 H 0.095 0.905 9 N -0.209 5.209 10 C 0.223 3.777 11 O -0.512 6.512 12 C -0.067 4.067 13 N -0.319 5.319 14 C -0.069 4.069 15 C 0.078 3.922 16 H 0.096 0.904 17 N -0.343 5.343 18 C 0.390 3.610 19 O -0.422 6.422 20 C -0.179 4.179 21 C -0.105 4.105 22 N -0.440 5.440 23 S 0.828 5.172 24 N -0.416 5.416 25 C -0.185 4.185 26 C -0.198 4.198 27 C -0.227 4.227 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.160 0.840 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.246 0.754 36 H 0.242 0.758 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.117 0.883 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.087 -21.304 -8.213 23.195 hybrid contribution -0.634 0.546 0.502 0.976 sum 3.452 -20.758 -7.711 22.412 Atomic orbital electron populations 1.69657 1.06761 1.29384 1.50185 1.26007 0.96533 1.02304 0.96226 0.85022 0.77817 0.76789 0.78922 1.19667 1.19372 1.19875 1.19616 0.92657 0.84141 1.50129 0.90513 1.41904 1.09334 1.04636 1.64993 1.20942 0.88264 0.86290 0.82203 1.90502 1.16021 1.87994 1.56714 1.21551 0.93856 0.87704 1.03561 1.59982 1.19268 1.01030 1.51622 1.22306 0.94898 0.86217 1.03521 1.20628 0.89410 0.92995 0.89170 0.90395 1.45778 1.12643 1.54904 1.20936 1.16814 0.81286 0.78733 0.84179 1.90749 1.76396 1.42645 1.32375 1.22392 0.97130 1.03647 0.94753 1.23899 0.90331 1.00070 0.96163 1.72198 1.38549 1.22152 1.11064 1.78853 0.86038 1.31670 1.20627 1.72284 1.36879 1.22704 1.09745 1.22613 1.01881 0.89942 1.04068 1.22998 1.02580 1.02264 0.91974 1.23205 0.99275 0.98154 1.02050 0.91248 0.76879 0.91008 0.87345 0.83994 0.92365 0.87763 0.75367 0.75812 0.85843 0.89349 0.86940 0.88343 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.21 13.05 21.67 0.28 -48.93 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.67 7.16 -2.91 -0.02 4.64 16 9 N -0.57 -29.05 5.29 -306.98 -1.62 -30.67 16 10 C 0.44 20.52 7.82 87.66 0.69 21.21 16 11 O -0.63 -34.88 15.78 -3.09 -0.05 -34.93 16 12 C 0.07 2.13 6.17 85.56 0.53 2.66 16 13 N -0.69 -20.71 6.12 -517.97 -3.17 -23.88 16 14 C 0.06 1.22 5.28 86.30 0.46 1.68 16 15 C 0.18 3.86 2.58 44.99 0.12 3.97 16 16 H 0.08 2.07 7.33 -2.39 -0.02 2.06 16 17 N -0.69 -15.42 4.33 -445.50 -1.93 -17.35 16 18 C 0.61 15.25 7.16 86.76 0.62 15.87 16 19 O -0.54 -15.67 13.86 -3.92 -0.05 -15.73 16 20 C -0.01 -0.13 6.81 41.98 0.29 0.15 16 21 C 0.09 1.75 11.22 85.22 0.96 2.70 16 22 N -0.60 -11.59 11.41 -92.44 -1.05 -12.64 16 23 S 0.79 12.36 23.69 -56.49 -1.34 11.03 16 24 N -0.56 -11.82 11.00 -80.58 -0.89 -12.71 16 25 C -0.17 -2.80 5.36 -10.79 -0.06 -2.86 16 26 C -0.16 -2.63 10.18 30.62 0.31 -2.32 16 27 C -0.19 -3.54 9.74 30.62 0.30 -3.24 16 28 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 29 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 32 H 0.34 11.10 7.28 -89.69 -0.65 10.44 16 33 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.41 8.52 7.74 -92.70 -0.72 7.80 16 36 H 0.23 3.68 8.06 -2.91 -0.02 3.66 16 37 H 0.12 1.67 8.11 -2.39 -0.02 1.65 16 38 H 0.09 1.62 8.05 -2.39 -0.02 1.61 16 39 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 2.26 5.04 -2.39 -0.01 2.24 16 Total: -1.00 -71.93 366.72 -3.29 -75.23 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.98 Total: 44.27 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 5.48 Total: 21.46 kcal Atomic # 7 Polarization: -137.80 SS G_CDS: -8.38 Total: -146.18 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.10 Total: -50.66 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 16 Polarization: 12.36 SS G_CDS: -1.34 Total: 11.03 kcal Total: -71.93 -3.29 -75.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322959510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.108 kcal (2) G-P(sol) polarization free energy of solvation -71.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds