Wall clock time and date at job start Tue Mar 31 2020 22:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09004 * 112.74411 * 75.76407 * 15 14 13 17 17 C 1.53503 * 113.48010 * 206.61733 * 15 14 13 18 18 C 1.53512 * 83.57512 * 140.79315 * 17 15 14 19 19 N 1.47475 * 87.93278 * 333.97760 * 18 17 15 20 20 C 1.46900 * 111.00189 * 138.70438 * 19 18 17 21 21 C 1.50705 * 109.46913 * 94.03331 * 20 19 18 22 22 C 1.38232 * 120.40733 * 90.00130 * 21 20 19 23 23 N 1.31844 * 120.81573 * 179.97438 * 22 21 20 24 24 C 1.31872 * 121.75605 * 359.97438 * 23 22 21 25 25 C 1.38421 * 120.72399 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.44139 * 179.97438 * 25 24 23 27 27 C 1.38587 * 120.39948 * 269.71762 * 21 20 19 28 28 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.09003 * 114.17237 * 254.43784 * 17 15 14 35 35 H 1.08996 * 114.16986 * 27.14827 * 17 15 14 36 36 H 1.09007 * 113.47836 * 219.21249 * 18 17 15 37 37 H 1.08996 * 113.53558 * 88.75662 * 18 17 15 38 38 H 1.09003 * 109.47136 * 214.02957 * 20 19 18 39 39 H 1.08990 * 109.47095 * 334.02970 * 20 19 18 40 40 H 1.07999 * 119.58977 * 359.95251 * 22 21 20 41 41 H 1.07998 * 119.63998 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.80541 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 3.9838 -8.7852 0.9352 17 6 3.1615 -10.0526 -0.6767 18 6 4.5785 -9.9412 -1.2565 19 7 4.4511 -8.4761 -1.1456 20 6 5.6989 -7.8747 -0.6564 21 6 6.5391 -7.4377 -1.8287 22 6 6.4044 -6.1646 -2.3501 23 7 7.1357 -5.7737 -3.3752 24 6 8.0192 -6.5719 -3.9420 25 6 8.2099 -7.8609 -3.4749 26 9 9.1162 -8.6740 -4.0602 27 6 7.4604 -8.3054 -2.3934 28 1 -0.4849 0.8401 0.0004 29 1 3.1244 -3.7267 -0.9039 30 1 3.1244 -3.7361 0.8761 31 1 3.8007 -6.1835 -0.0260 32 1 1.7212 -7.8796 0.8553 33 1 1.7219 -7.8705 -0.9248 34 1 3.0350 -10.8643 0.0398 35 1 2.3689 -10.0073 -1.4235 36 1 4.6558 -10.2936 -2.2851 37 1 5.3481 -10.3604 -0.6085 38 1 5.4662 -7.0106 -0.0341 39 1 6.2496 -8.6084 -0.0681 40 1 5.6911 -5.4818 -1.9126 41 1 8.5997 -6.2164 -4.7804 42 1 7.5900 -9.3045 -2.0042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323180355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:03 Heat of formation + Delta-G solvation = -6.130654 kcal Electronic energy + Delta-G solvation = -26056.337050 eV Core-core repulsion = 22078.453985 eV Total energy + Delta-G solvation = -3977.883065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.36381 -41.17424 -40.13612 -38.85131 -34.48711 -34.01411 -32.40259 -31.86625 -30.23741 -29.60267 -27.59787 -25.52930 -25.45245 -24.15157 -23.32529 -22.26730 -20.49625 -20.06082 -17.93344 -17.79401 -17.66581 -17.21220 -16.74397 -16.46362 -16.16234 -16.08986 -15.27638 -15.05204 -14.78258 -14.71110 -14.34738 -13.96994 -13.89152 -13.70828 -13.59409 -13.49272 -13.13444 -12.84798 -12.55993 -12.44594 -12.10330 -11.79875 -11.68307 -11.56534 -11.03979 -11.00030 -10.98459 -10.72624 -10.22447 -9.98851 -9.79367 -9.48770 -9.32564 -9.25237 -9.04477 -8.84224 -8.21065 -6.47307 -6.19314 -3.89563 0.50321 0.66202 2.98744 3.13453 3.15175 3.24786 3.29926 3.33446 3.49441 3.59675 3.77314 3.90609 4.07656 4.18833 4.22818 4.24926 4.34571 4.45614 4.50960 4.73053 4.75298 4.83061 4.86187 5.04305 5.15955 5.17324 5.24832 5.28529 5.37665 5.39534 5.49882 5.59099 5.64312 5.68620 5.83906 5.87693 5.91887 6.15076 6.21250 6.50820 6.63897 7.46882 7.62126 7.71380 8.37735 8.64125 9.26200 10.88122 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.002799 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.962653 B =10002.781261 C =12375.942594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.733 5.733 14 C 0.140 3.860 15 C 0.015 3.985 16 H 0.087 0.913 17 C -0.133 4.133 18 C -0.004 4.004 19 N -0.458 5.458 20 C 0.057 3.943 21 C -0.095 4.095 22 C 0.112 3.888 23 N -0.451 5.451 24 C 0.074 3.926 25 C 0.045 3.955 26 F -0.132 7.132 27 C -0.102 4.102 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.392 0.608 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.165 0.835 41 H 0.167 0.833 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.782 -23.199 -1.957 28.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.744 3.256 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.015 3.985 15 C -0.095 4.095 16 H 0.105 0.895 17 C -0.172 4.172 18 C -0.133 4.133 19 N -0.180 5.180 20 C -0.072 4.072 21 C -0.098 4.098 22 C -0.045 4.045 23 N -0.158 5.158 24 C -0.085 4.085 25 C 0.024 3.976 26 F -0.111 7.111 27 C -0.130 4.130 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.226 0.774 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.182 0.818 41 H 0.184 0.816 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 14.363 -22.169 -2.873 26.571 hybrid contribution 3.184 -0.087 0.872 3.302 sum 17.547 -22.257 -2.001 28.412 Atomic orbital electron populations 1.70023 1.05950 1.27417 1.46943 1.24991 0.95019 0.99015 0.94555 0.86176 0.79404 0.81591 0.78386 1.20236 1.20795 1.19691 1.22870 0.94910 0.91663 1.58852 0.90926 1.85399 1.04897 0.96286 1.96694 1.23531 1.06614 0.95504 1.04802 1.20295 0.86534 0.86254 0.75168 1.90702 1.15346 1.85573 1.47554 1.45907 1.09633 1.05415 1.77884 1.21234 0.94419 0.80186 1.02652 1.23749 0.94881 0.95950 0.94906 0.89520 1.23168 0.97588 0.95909 1.00501 1.23873 0.97388 0.89461 1.02560 1.69037 1.07307 1.10841 1.30828 1.21669 0.91232 1.00898 0.93353 1.20546 0.96150 0.94695 0.98373 1.22857 0.96040 0.94038 0.91613 1.67823 1.04376 1.35098 1.08506 1.22988 0.96745 0.88763 0.99981 1.18795 0.92280 0.90764 0.95803 1.91526 1.64532 1.72034 1.82970 1.21490 0.95502 1.00932 0.95035 0.92211 0.89227 0.89388 0.77356 0.91130 0.90890 0.90000 0.88160 0.89437 0.91075 0.89205 0.91800 0.81780 0.81599 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.53 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -3.08 6.16 36.00 0.22 -2.85 16 11 C 0.53 9.79 7.85 -10.99 -0.09 9.70 16 12 O -0.52 -11.69 15.86 5.56 0.09 -11.60 16 13 N -0.73 -9.43 5.46 -60.29 -0.33 -9.76 16 14 C 0.14 1.51 5.81 -4.04 -0.02 1.48 16 15 C 0.01 0.10 3.23 -71.45 -0.23 -0.13 16 16 H 0.09 0.49 7.91 -51.93 -0.41 0.08 16 17 C -0.13 -0.75 8.00 -26.21 -0.21 -0.96 16 18 C 0.00 -0.02 7.71 -7.56 -0.06 -0.08 16 19 N -0.46 -3.37 5.88 -237.98 -1.40 -4.77 16 20 C 0.06 0.36 4.72 -4.97 -0.02 0.34 16 21 C -0.10 -0.75 5.48 -104.49 -0.57 -1.33 16 22 C 0.11 1.11 10.86 -17.55 -0.19 0.92 16 23 N -0.45 -5.08 10.36 -13.20 -0.14 -5.21 16 24 C 0.07 0.69 11.17 -17.47 -0.20 0.49 16 25 C 0.05 0.39 7.35 -39.28 -0.29 0.10 16 26 F -0.13 -1.18 17.28 2.25 0.04 -1.14 16 27 C -0.10 -0.77 9.85 -39.21 -0.39 -1.16 16 28 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 31 H 0.39 4.02 6.22 -40.82 -0.25 3.77 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 33 H 0.07 0.90 7.88 -51.92 -0.41 0.49 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.10 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.07 0.28 7.42 -51.93 -0.39 -0.10 16 38 H 0.09 0.53 6.22 -51.93 -0.32 0.21 16 39 H 0.06 0.30 7.25 -51.93 -0.38 -0.08 16 40 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 41 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 LS Contribution 374.53 15.07 5.64 5.64 Total: -1.00 -35.73 374.53 -9.94 -45.66 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.50 Total: 0.47 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.85 Total: -6.42 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -1.13 Total: -45.29 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.73 -9.94 -45.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323180355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.533 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds