Wall clock time and date at job start Tue Mar 31 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00318 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00269 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00068 * 3 2 1 7 7 C 1.38803 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99679 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99855 * 0.27728 * 7 2 1 10 10 C 1.80999 * 99.99825 * 179.72221 * 9 7 2 11 11 C 1.50697 * 109.47181 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00042 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00209 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00278 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47595 * 179.97438 * 14 13 11 16 16 H 1.09004 * 112.74411 * 75.76407 * 15 14 13 17 17 C 1.53503 * 113.48010 * 206.61733 * 15 14 13 18 18 C 1.53512 * 83.57512 * 140.79315 * 17 15 14 19 19 N 1.47475 * 87.93278 * 333.97760 * 18 17 15 20 20 C 1.46900 * 111.00189 * 138.70438 * 19 18 17 21 21 C 1.50705 * 109.46913 * 94.03331 * 20 19 18 22 22 C 1.38232 * 120.40733 * 90.00130 * 21 20 19 23 23 N 1.31844 * 120.81573 * 179.97438 * 22 21 20 24 24 C 1.31872 * 121.75605 * 359.97438 * 23 22 21 25 25 C 1.38421 * 120.72399 * 0.02562 * 24 23 22 26 26 F 1.35103 * 120.44139 * 179.97438 * 25 24 23 27 27 C 1.38587 * 120.39948 * 269.71762 * 21 20 19 28 28 H 0.97000 * 119.99219 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.47409 * 300.00151 * 10 9 7 30 30 H 1.09002 * 109.47152 * 60.00041 * 10 9 7 31 31 H 0.97000 * 119.99750 * 359.97438 * 13 11 10 32 32 H 1.09008 * 109.46975 * 299.99840 * 14 13 11 33 33 H 1.09007 * 109.47007 * 59.99239 * 14 13 11 34 34 H 1.09003 * 114.17237 * 254.43784 * 17 15 14 35 35 H 1.08996 * 114.16986 * 27.14827 * 17 15 14 36 36 H 1.09007 * 113.47836 * 219.21249 * 18 17 15 37 37 H 1.08996 * 113.53558 * 88.75662 * 18 17 15 38 38 H 1.09003 * 109.47136 * 214.02957 * 20 19 18 39 39 H 1.08990 * 109.47095 * 334.02970 * 20 19 18 40 40 H 1.07999 * 119.58977 * 359.95251 * 22 21 20 41 41 H 1.07998 * 119.63998 * 179.97438 * 24 23 22 42 42 H 1.08006 * 120.80541 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6527 0.7001 6 1 3.5480 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1292 -2.7280 -0.0086 10 6 2.5157 -3.8914 -0.0148 11 6 1.9872 -5.3027 -0.0216 12 8 0.7910 -5.5022 -0.0227 13 7 2.8440 -6.3431 -0.0265 14 6 2.3302 -7.7150 -0.0337 15 6 3.5021 -8.6986 -0.0388 16 1 3.9838 -8.7852 0.9352 17 6 3.1615 -10.0526 -0.6767 18 6 4.5785 -9.9412 -1.2565 19 7 4.4511 -8.4761 -1.1456 20 6 5.6989 -7.8747 -0.6564 21 6 6.5391 -7.4377 -1.8287 22 6 6.4044 -6.1646 -2.3501 23 7 7.1357 -5.7737 -3.3752 24 6 8.0192 -6.5719 -3.9420 25 6 8.2099 -7.8609 -3.4749 26 9 9.1162 -8.6740 -4.0602 27 6 7.4604 -8.3054 -2.3934 28 1 -0.4849 0.8401 0.0004 29 1 3.1244 -3.7267 -0.9039 30 1 3.1244 -3.7361 0.8761 31 1 3.8007 -6.1835 -0.0260 32 1 1.7212 -7.8796 0.8553 33 1 1.7219 -7.8705 -0.9248 34 1 3.0350 -10.8643 0.0398 35 1 2.3689 -10.0073 -1.4235 36 1 4.6558 -10.2936 -2.2851 37 1 5.3481 -10.3604 -0.6085 38 1 5.4662 -7.0106 -0.0341 39 1 6.2496 -8.6084 -0.0681 40 1 5.6911 -5.4818 -1.9126 41 1 8.5997 -6.2164 -4.7804 42 1 7.5900 -9.3045 -2.0042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323180355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:02 Heat of formation + Delta-G solvation = -32.829899 kcal Electronic energy + Delta-G solvation = -26057.494816 eV Core-core repulsion = 22078.453985 eV Total energy + Delta-G solvation = -3979.040831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.03259 -41.76844 -40.85117 -40.17386 -35.61581 -34.73092 -34.56938 -32.50219 -31.52725 -30.29531 -28.62451 -27.60351 -26.07093 -24.82191 -24.02700 -22.86296 -21.78565 -20.69601 -19.80607 -18.48538 -18.33639 -17.86627 -17.83369 -17.35549 -17.28526 -16.86801 -16.79790 -16.43418 -15.89910 -15.83159 -15.37006 -14.98971 -14.66838 -14.64089 -14.45986 -14.35770 -14.28551 -14.09291 -13.66175 -13.35764 -13.15252 -12.93354 -12.86012 -12.62153 -12.53980 -12.27703 -12.06887 -11.74956 -11.56110 -11.13301 -10.92818 -10.81539 -10.65599 -10.26067 -10.07722 -9.97052 -9.82348 -8.64912 -8.33587 -6.11117 -0.15460 0.03522 1.28320 1.43045 1.48008 1.58480 1.65223 2.25237 2.29844 2.50774 2.90713 3.00618 3.06699 3.33445 3.37746 3.51408 3.63529 3.68030 3.83229 3.84456 3.91888 4.05459 4.14202 4.29516 4.31696 4.34758 4.42059 4.49819 4.51682 4.68748 4.73339 4.79664 4.83483 4.91575 4.98123 5.04830 5.24275 5.29486 5.43248 5.51357 5.57693 6.04846 6.21151 6.51178 6.79094 7.07957 7.27266 8.75659 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.010604 B = 0.002799 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.962653 B =10002.781261 C =12375.942594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.545 4.545 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.532 3.468 12 O -0.567 6.567 13 N -0.706 5.706 14 C 0.136 3.864 15 C 0.024 3.976 16 H 0.112 0.888 17 C -0.129 4.129 18 C 0.002 3.998 19 N -0.483 5.483 20 C 0.058 3.942 21 C -0.089 4.089 22 C 0.093 3.907 23 N -0.485 5.485 24 C 0.062 3.938 25 C 0.039 3.961 26 F -0.134 7.134 27 C -0.096 4.096 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.408 0.592 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.527 -24.729 -1.085 31.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.181 1.181 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.318 3.682 12 O -0.445 6.445 13 N -0.360 5.360 14 C 0.012 3.988 15 C -0.086 4.086 16 H 0.130 0.870 17 C -0.167 4.167 18 C -0.127 4.127 19 N -0.206 5.206 20 C -0.071 4.071 21 C -0.091 4.091 22 C -0.065 4.065 23 N -0.192 5.192 24 C -0.097 4.097 25 C 0.018 3.982 26 F -0.113 7.113 27 C -0.123 4.123 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.245 0.755 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.181 0.819 41 H 0.196 0.804 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.166 -23.745 -2.003 29.368 hybrid contribution 2.378 0.241 0.567 2.457 sum 19.544 -23.504 -1.436 30.602 Atomic orbital electron populations 1.70187 1.07952 1.28560 1.48105 1.26116 0.95955 1.03277 0.93790 0.84973 0.78265 0.76121 0.78754 1.19455 1.20260 1.18115 1.23203 0.95331 0.92031 1.58719 0.89947 1.85569 1.10551 0.99177 1.97024 1.23375 1.03567 0.94594 1.06613 1.20047 0.86272 0.86684 0.75214 1.90689 1.17413 1.86091 1.50323 1.45666 1.09836 1.05230 1.75250 1.21425 0.96295 0.79422 1.01650 1.23743 0.93528 0.95110 0.96172 0.87045 1.23150 0.97524 0.95585 1.00464 1.23917 0.97763 0.88120 1.02866 1.68993 1.07954 1.12445 1.31218 1.21747 0.90868 1.01737 0.92720 1.20664 0.96111 0.93798 0.98562 1.23008 0.96335 0.95233 0.91882 1.67772 1.05507 1.36350 1.09616 1.23208 0.96758 0.89228 1.00462 1.18875 0.92493 0.90564 0.96273 1.91522 1.64659 1.71973 1.83110 1.21776 0.94439 1.01900 0.94138 0.92022 0.87564 0.87162 0.75450 0.91375 0.92791 0.87896 0.89588 0.89996 0.88527 0.88925 0.89094 0.81938 0.80405 0.81290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.45 13.22 21.65 0.29 -56.16 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 44.03 29.55 68.60 2.03 46.06 16 4 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.55 -31.33 9.50 67.96 0.65 -30.68 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.41 20.57 -56.49 -1.16 -9.57 16 10 C -0.13 -5.16 6.16 71.23 0.44 -4.72 16 11 C 0.53 19.52 7.85 87.66 0.69 20.20 16 12 O -0.57 -26.31 15.86 -3.02 -0.05 -26.35 16 13 N -0.71 -17.13 5.46 -463.06 -2.53 -19.66 16 14 C 0.14 2.76 5.81 86.38 0.50 3.26 16 15 C 0.02 0.26 3.23 42.18 0.14 0.40 16 16 H 0.11 0.73 7.91 -2.39 -0.02 0.72 16 17 C -0.13 -1.07 8.00 30.94 0.25 -0.82 16 18 C 0.00 0.01 7.71 83.57 0.64 0.66 16 19 N -0.48 -5.64 5.88 -906.85 -5.33 -10.98 16 20 C 0.06 0.52 4.72 85.56 0.40 0.92 16 21 C -0.09 -1.20 5.48 -19.78 -0.11 -1.31 16 22 C 0.09 1.75 10.86 84.69 0.92 2.67 16 23 N -0.48 -10.80 10.36 -195.67 -2.03 -12.82 16 24 C 0.06 1.12 11.17 84.73 0.95 2.07 16 25 C 0.04 0.62 7.35 22.47 0.17 0.79 16 26 F -0.13 -2.18 17.28 44.97 0.78 -1.40 16 27 C -0.10 -1.18 9.85 22.51 0.22 -0.96 16 28 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 30 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 31 H 0.41 7.39 6.22 -92.71 -0.58 6.81 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.05 1.33 7.88 -2.38 -0.02 1.31 16 34 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.98 7.94 -2.39 -0.02 0.96 16 36 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.10 0.24 7.42 -2.39 -0.02 0.23 16 38 H 0.09 0.77 6.22 -2.39 -0.01 0.75 16 39 H 0.09 0.36 7.25 -2.39 -0.02 0.34 16 40 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 41 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.17 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -80.92 374.53 -1.22 -82.14 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.48 Total: 15.05 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.32 Total: -6.30 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -9.60 Total: -99.62 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.05 Total: -26.35 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.78 Total: -1.40 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -80.92 -1.22 -82.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323180355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.308 kcal (2) G-P(sol) polarization free energy of solvation -80.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds