Wall clock time and date at job start Tue Mar 31 2020 22:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00477 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00494 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00324 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 C 1.53010 * 109.47032 * 179.97438 * 14 13 11 16 16 H 1.08997 * 112.95571 * 285.33435 * 15 14 13 17 17 C 1.53929 * 113.75744 * 153.68602 * 15 14 13 18 18 C 1.53933 * 86.34222 * 221.96695 * 17 15 14 19 19 N 1.47955 * 113.75546 * 56.98461 * 15 14 13 20 20 C 1.46904 * 110.99599 * 251.89987 * 19 15 14 21 21 C 1.50700 * 109.46914 * 170.00144 * 20 19 15 22 22 C 1.38244 * 120.40848 * 89.99916 * 21 20 19 23 23 N 1.31840 * 120.82069 * 179.97438 * 22 21 20 24 24 C 1.31868 * 121.75400 * 359.97438 * 23 22 21 25 25 C 1.38420 * 120.72625 * 0.03040 * 24 23 22 26 26 F 1.35104 * 120.44335 * 179.97438 * 25 24 23 27 27 C 1.38596 * 120.40681 * 269.71675 * 21 20 19 28 28 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 31 31 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 32 32 H 1.08992 * 109.47434 * 300.00120 * 14 13 11 33 33 H 1.09001 * 109.47023 * 60.00311 * 14 13 11 34 34 H 1.09007 * 113.73739 * 336.32623 * 17 15 14 35 35 H 1.09002 * 113.73514 * 107.50045 * 17 15 14 36 36 H 1.08997 * 113.76241 * 138.04281 * 18 17 15 37 37 H 1.09006 * 113.75783 * 269.29453 * 18 17 15 38 38 H 1.08999 * 109.47128 * 289.99803 * 20 19 15 39 39 H 1.08999 * 109.47330 * 50.00465 * 20 19 15 40 40 H 1.07995 * 119.58661 * 359.97438 * 22 21 20 41 41 H 1.08003 * 119.63980 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.79731 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 6 3.5028 -8.6985 -0.0036 16 1 3.9984 -8.7680 -0.9719 17 6 3.1666 -10.0647 0.6206 18 6 4.5472 -9.9850 1.2967 19 7 4.4345 -8.5168 1.1313 20 6 5.7066 -7.9367 0.6804 21 6 6.5303 -7.5398 1.8783 22 6 7.4119 -8.4381 2.4500 23 7 8.1368 -8.0993 3.4978 24 6 8.0539 -6.9004 4.0407 25 6 7.1933 -5.9477 3.5234 26 9 7.1126 -4.7213 4.0844 27 6 6.4175 -6.2677 2.4168 28 1 -0.4850 -0.8401 0.0004 29 1 3.1239 -3.7308 -0.8925 30 1 3.1252 -3.7316 0.8875 31 1 3.8011 -6.1834 -0.0032 32 1 1.7223 -7.8753 0.8876 33 1 1.7218 -7.8748 -0.8923 34 1 2.3324 -10.0335 1.3216 35 1 3.0790 -10.8705 -0.1082 36 1 4.5468 -10.3124 2.3363 37 1 5.3498 -10.4326 0.7104 38 1 6.2533 -8.6732 0.0915 39 1 5.5081 -7.0569 0.0683 40 1 7.5079 -9.4297 2.0332 41 1 8.6642 -6.6592 4.8985 42 1 5.7401 -5.5439 1.9884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323180356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:06 Heat of formation + Delta-G solvation = -15.177429 kcal Electronic energy + Delta-G solvation = -26197.093753 eV Core-core repulsion = 22218.818390 eV Total energy + Delta-G solvation = -3978.275362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.24610 -41.05928 -40.09233 -38.94927 -34.55349 -34.05279 -32.52923 -31.84820 -30.32925 -29.62007 -27.75606 -25.48163 -24.85718 -24.18988 -23.42819 -22.25774 -20.56744 -20.02370 -18.36098 -17.80359 -17.69662 -17.22504 -16.75586 -16.68801 -16.26653 -16.02638 -15.39273 -15.15911 -14.88917 -14.31751 -14.23774 -14.00765 -13.85089 -13.76252 -13.61810 -13.48176 -13.27130 -12.66702 -12.59075 -12.40006 -12.14355 -12.07283 -11.81792 -11.80128 -11.40999 -11.18044 -10.91000 -10.19285 -10.14464 -10.04561 -9.59418 -9.56309 -9.37672 -9.24234 -9.02807 -8.93610 -8.22673 -6.67374 -6.62523 -4.00362 0.47087 0.68013 2.84481 2.99960 3.08084 3.33418 3.38659 3.40161 3.55080 3.59126 3.64950 3.97617 3.99423 4.18321 4.22734 4.24641 4.36352 4.44607 4.55477 4.65803 4.71334 4.81728 4.84120 4.99696 5.07267 5.20660 5.22186 5.29450 5.33414 5.42811 5.46512 5.48159 5.60476 5.66108 5.74294 5.78812 5.83831 5.98627 6.19479 6.47571 6.53440 7.37043 7.59655 7.91932 8.49925 8.50852 9.26788 10.81528 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.003073 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.380766 B = 9109.314400 C =11618.937547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 1.086 2.914 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.114 6.114 10 C -0.131 4.131 11 C 0.530 3.470 12 O -0.518 6.518 13 N -0.731 5.731 14 C 0.142 3.858 15 C 0.018 3.982 16 H 0.088 0.912 17 C -0.134 4.134 18 C 0.001 3.999 19 N -0.467 5.467 20 C 0.059 3.941 21 C -0.094 4.094 22 C 0.094 3.906 23 N -0.457 5.457 24 C 0.070 3.930 25 C 0.054 3.946 26 F -0.126 7.126 27 C -0.091 4.091 28 H 0.278 0.722 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.393 0.607 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.158 0.842 41 H 0.167 0.833 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.840 -22.831 2.056 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.112 5.888 10 C -0.282 4.282 11 C 0.316 3.684 12 O -0.392 6.392 13 N -0.386 5.386 14 C 0.017 3.983 15 C -0.092 4.092 16 H 0.106 0.894 17 C -0.172 4.172 18 C -0.128 4.128 19 N -0.190 5.190 20 C -0.070 4.070 21 C -0.096 4.096 22 C -0.064 4.064 23 N -0.164 5.164 24 C -0.089 4.089 25 C 0.033 3.967 26 F -0.104 7.104 27 C -0.118 4.118 28 H 0.091 0.909 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.227 0.773 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.013 -21.681 2.980 26.540 hybrid contribution 2.053 -0.764 -0.896 2.367 sum 17.066 -22.445 2.084 28.273 Atomic orbital electron populations 1.70772 1.06706 1.31001 1.43382 1.26051 0.96325 1.02127 0.92999 0.83296 0.74414 0.73960 0.77071 1.21020 1.21309 1.20495 1.23729 0.96031 0.92205 1.63618 0.91618 1.84823 1.08024 0.98757 1.97205 1.23313 1.05165 0.94712 1.05031 1.20265 0.86583 0.86252 0.75319 1.90705 1.15303 1.85562 1.47623 1.45851 1.09631 1.05434 1.77676 1.21203 0.94396 0.79983 1.02677 1.23803 0.94891 0.95946 0.94516 0.89393 1.23337 0.98219 0.95681 0.99995 1.24020 0.97309 0.88954 1.02471 1.68671 1.07653 1.12161 1.30504 1.21634 0.91079 1.01016 0.93268 1.20544 0.97325 0.93467 0.98313 1.22672 0.92162 0.99464 0.92095 1.67727 1.21861 1.17283 1.09542 1.22918 0.97224 0.88505 1.00208 1.18839 0.99997 0.82441 0.95435 1.91574 1.95144 1.39828 1.83897 1.21628 0.98007 0.97640 0.94530 0.90948 0.89130 0.89129 0.77279 0.90860 0.91021 0.88460 0.90297 0.88988 0.90831 0.91662 0.89595 0.82478 0.81561 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.66 13.67 55.49 0.76 -26.90 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.09 25.15 29.92 -169.99 -5.09 20.07 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.61 -17.61 9.50 30.94 0.29 -17.31 16 8 H 0.07 1.82 7.80 -52.49 -0.41 1.42 16 9 S -0.11 -3.09 19.60 -107.50 -2.11 -5.20 16 10 C -0.13 -2.64 6.16 36.01 0.22 -2.42 16 11 C 0.53 9.77 7.85 -10.99 -0.09 9.68 16 12 O -0.52 -11.63 15.86 5.55 0.09 -11.54 16 13 N -0.73 -9.41 5.48 -60.29 -0.33 -9.74 16 14 C 0.14 1.52 5.83 -4.04 -0.02 1.50 16 15 C 0.02 0.12 3.41 -66.66 -0.23 -0.10 16 16 H 0.09 0.49 7.92 -51.93 -0.41 0.08 16 17 C -0.13 -0.73 7.84 -25.79 -0.20 -0.94 16 18 C 0.00 0.00 7.96 -2.65 -0.02 -0.02 16 19 N -0.47 -3.38 5.78 -231.19 -1.34 -4.71 16 20 C 0.06 0.36 4.76 -4.97 -0.02 0.34 16 21 C -0.09 -0.74 5.46 -104.49 -0.57 -1.31 16 22 C 0.09 0.73 10.86 -17.55 -0.19 0.54 16 23 N -0.46 -4.33 10.36 -13.20 -0.14 -4.47 16 24 C 0.07 0.64 11.17 -17.47 -0.20 0.44 16 25 C 0.05 0.55 7.35 -39.28 -0.29 0.26 16 26 F -0.13 -1.46 17.28 2.25 0.04 -1.42 16 27 C -0.09 -0.86 9.85 -39.21 -0.39 -1.25 16 28 H 0.28 8.88 7.12 -40.82 -0.29 8.59 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.39 4.08 6.47 -40.82 -0.26 3.82 16 32 H 0.07 0.90 7.87 -51.93 -0.41 0.49 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.61 7.92 -51.93 -0.41 0.20 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.26 7.48 -51.93 -0.39 -0.13 16 38 H 0.07 0.28 7.34 -51.93 -0.38 -0.10 16 39 H 0.09 0.52 6.37 -51.93 -0.33 0.19 16 40 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.17 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 373.93 15.07 5.64 5.64 Total: -1.00 -36.40 373.93 -9.74 -46.15 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -5.47 Total: 1.79 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -1.79 Total: -9.64 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -1.05 Total: -45.83 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.09 Total: 20.07 kcal Atomic # 16 Polarization: -3.09 SS G_CDS: -2.11 Total: -5.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.40 -9.74 -46.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323180356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.970 kcal (2) G-P(sol) polarization free energy of solvation -36.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds