Wall clock time and date at job start Tue Mar 31 2020 22:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00477 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00494 * 3 2 1 6 6 H 1.48499 * 109.47352 * 330.00324 * 3 2 1 7 7 C 1.38798 * 119.99969 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99506 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99738 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47234 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99701 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00005 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99680 * 180.02562 * 13 11 10 15 15 C 1.53010 * 109.47032 * 179.97438 * 14 13 11 16 16 H 1.08997 * 112.95571 * 285.33435 * 15 14 13 17 17 C 1.53929 * 113.75744 * 153.68602 * 15 14 13 18 18 C 1.53933 * 86.34222 * 221.96695 * 17 15 14 19 19 N 1.47955 * 113.75546 * 56.98461 * 15 14 13 20 20 C 1.46904 * 110.99599 * 251.89987 * 19 15 14 21 21 C 1.50700 * 109.46914 * 170.00144 * 20 19 15 22 22 C 1.38244 * 120.40848 * 89.99916 * 21 20 19 23 23 N 1.31840 * 120.82069 * 179.97438 * 22 21 20 24 24 C 1.31868 * 121.75400 * 359.97438 * 23 22 21 25 25 C 1.38420 * 120.72625 * 0.03040 * 24 23 22 26 26 F 1.35104 * 120.44335 * 179.97438 * 25 24 23 27 27 C 1.38596 * 120.40681 * 269.71675 * 21 20 19 28 28 H 0.97005 * 119.99723 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47255 * 299.99975 * 10 9 7 30 30 H 1.09001 * 109.46783 * 60.00283 * 10 9 7 31 31 H 0.96995 * 120.00238 * 359.97438 * 13 11 10 32 32 H 1.08992 * 109.47434 * 300.00120 * 14 13 11 33 33 H 1.09001 * 109.47023 * 60.00311 * 14 13 11 34 34 H 1.09007 * 113.73739 * 336.32623 * 17 15 14 35 35 H 1.09002 * 113.73514 * 107.50045 * 17 15 14 36 36 H 1.08997 * 113.76241 * 138.04281 * 18 17 15 37 37 H 1.09006 * 113.75783 * 269.29453 * 18 17 15 38 38 H 1.08999 * 109.47128 * 289.99803 * 20 19 15 39 39 H 1.08999 * 109.47330 * 50.00465 * 20 19 15 40 40 H 1.07995 * 119.58661 * 359.97438 * 22 21 20 41 41 H 1.08003 * 119.63980 * 180.02562 * 24 23 22 42 42 H 1.07997 * 120.79731 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 1.4001 5 1 3.5477 1.4403 -0.7001 6 1 1.4477 2.6528 -0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0021 11 6 1.9876 -5.3027 -0.0017 12 8 0.7913 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 6 2.3307 -7.7150 -0.0024 15 6 3.5028 -8.6985 -0.0036 16 1 3.9984 -8.7680 -0.9719 17 6 3.1666 -10.0647 0.6206 18 6 4.5472 -9.9850 1.2967 19 7 4.4345 -8.5168 1.1313 20 6 5.7066 -7.9367 0.6804 21 6 6.5303 -7.5398 1.8783 22 6 7.4119 -8.4381 2.4500 23 7 8.1368 -8.0993 3.4978 24 6 8.0539 -6.9004 4.0407 25 6 7.1933 -5.9477 3.5234 26 9 7.1126 -4.7213 4.0844 27 6 6.4175 -6.2677 2.4168 28 1 -0.4850 -0.8401 0.0004 29 1 3.1239 -3.7308 -0.8925 30 1 3.1252 -3.7316 0.8875 31 1 3.8011 -6.1834 -0.0032 32 1 1.7223 -7.8753 0.8876 33 1 1.7218 -7.8748 -0.8923 34 1 2.3324 -10.0335 1.3216 35 1 3.0790 -10.8705 -0.1082 36 1 4.5468 -10.3124 2.3363 37 1 5.3498 -10.4326 0.7104 38 1 6.2533 -8.6732 0.0915 39 1 5.5081 -7.0569 0.0683 40 1 7.5079 -9.4297 2.0332 41 1 8.6642 -6.6592 4.8985 42 1 5.7401 -5.5439 1.9884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323180356.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:05 Heat of formation + Delta-G solvation = -42.319956 kcal Electronic energy + Delta-G solvation = -26198.270741 eV Core-core repulsion = 22218.818390 eV Total energy + Delta-G solvation = -3979.452351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.05483 -41.66259 -40.86080 -40.18663 -35.71376 -34.76176 -34.72097 -32.52000 -31.66057 -30.26052 -28.74973 -27.06757 -26.02895 -24.85313 -24.14419 -22.85664 -21.88899 -20.71035 -20.33073 -18.49500 -18.41322 -18.05764 -17.85429 -17.59045 -17.28942 -16.84038 -16.54143 -16.36226 -15.92560 -15.73958 -15.44362 -14.99521 -14.84886 -14.71910 -14.49480 -14.38719 -14.33427 -14.15677 -13.90516 -13.68618 -13.19649 -13.03945 -12.76178 -12.63919 -12.41121 -11.95674 -11.90557 -11.79828 -11.56011 -11.12157 -11.05951 -10.80152 -10.69660 -10.34266 -10.17435 -9.99278 -9.76246 -8.93994 -8.88269 -6.29049 -0.17041 -0.00067 1.18179 1.50378 1.51038 1.59947 1.78230 2.12939 2.32684 2.48098 2.90383 2.96823 3.01007 3.12876 3.39362 3.48455 3.63708 3.67254 3.77915 3.81512 3.86593 4.04855 4.08202 4.12290 4.17241 4.32469 4.33129 4.43064 4.53277 4.62804 4.76516 4.81264 4.83453 4.86043 4.98364 5.02561 5.24068 5.27389 5.43629 5.55311 5.62684 6.03202 6.13871 6.39118 6.72955 7.04737 7.13967 8.49639 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.003073 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.380766 B = 9109.314400 C =11618.937547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.018 4.018 3 Si 1.138 2.862 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.278 1.278 7 C -0.614 4.614 8 H 0.074 0.926 9 S -0.193 6.193 10 C -0.110 4.110 11 C 0.531 3.469 12 O -0.565 6.565 13 N -0.703 5.703 14 C 0.138 3.862 15 C 0.026 3.974 16 H 0.113 0.887 17 C -0.130 4.130 18 C 0.007 3.993 19 N -0.493 5.493 20 C 0.059 3.941 21 C -0.090 4.090 22 C 0.098 3.902 23 N -0.474 5.474 24 C 0.067 3.933 25 C 0.031 3.969 26 F -0.141 7.141 27 C -0.104 4.104 28 H 0.261 0.739 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.409 0.591 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.188 0.812 41 H 0.182 0.818 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.678 -24.661 1.187 31.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.222 4.222 3 Si 0.956 3.044 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.203 1.203 7 C -0.762 4.762 8 H 0.092 0.908 9 S 0.034 5.966 10 C -0.262 4.262 11 C 0.316 3.684 12 O -0.444 6.444 13 N -0.357 5.357 14 C 0.014 3.986 15 C -0.083 4.083 16 H 0.131 0.869 17 C -0.168 4.168 18 C -0.121 4.121 19 N -0.216 5.216 20 C -0.069 4.069 21 C -0.092 4.092 22 C -0.059 4.059 23 N -0.182 5.182 24 C -0.091 4.091 25 C 0.010 3.990 26 F -0.120 7.120 27 C -0.131 4.131 28 H 0.072 0.928 29 H 0.130 0.870 30 H 0.124 0.876 31 H 0.246 0.754 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.205 0.795 41 H 0.199 0.801 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 17.909 -23.571 2.117 29.678 hybrid contribution 1.219 -0.382 -0.617 1.419 sum 19.128 -23.953 1.500 30.690 Atomic orbital electron populations 1.70892 1.07988 1.30052 1.45899 1.27816 0.96323 1.06339 0.91686 0.82699 0.74053 0.69533 0.78146 1.19423 1.18653 1.20302 1.24055 0.96462 0.92855 1.62791 0.90797 1.85045 1.13059 1.01045 1.97458 1.23223 1.02222 0.94000 1.06724 1.19987 0.86342 0.86594 0.75432 1.90694 1.17299 1.86040 1.50356 1.45625 1.09806 1.05262 1.75000 1.21400 0.96293 0.79170 1.01698 1.23771 0.93595 0.95162 0.95751 0.86928 1.23307 0.98123 0.95303 1.00061 1.24080 0.97779 0.87566 1.02642 1.68619 1.08297 1.13859 1.30850 1.21718 0.90747 1.01875 0.92593 1.20732 0.97262 0.92599 0.98608 1.23184 0.91044 1.00520 0.91201 1.67793 1.22667 1.17266 1.10455 1.23147 0.97069 0.88316 1.00570 1.19066 1.01308 0.82306 0.96353 1.91527 1.95390 1.40805 1.84287 1.21785 0.98083 0.98617 0.94639 0.92801 0.87025 0.87609 0.75423 0.92759 0.91221 0.89928 0.88203 0.89593 0.88087 0.88718 0.89544 0.79501 0.80127 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.46 13.67 21.65 0.30 -58.17 16 2 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 3 Si 1.14 49.88 29.92 68.60 2.05 51.93 16 4 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.61 -35.74 9.50 67.95 0.65 -35.10 16 8 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 9 S -0.19 -10.71 19.60 -56.49 -1.11 -11.81 16 10 C -0.11 -4.39 6.16 71.24 0.44 -3.95 16 11 C 0.53 19.40 7.85 87.66 0.69 20.09 16 12 O -0.57 -26.00 15.86 -3.04 -0.05 -26.05 16 13 N -0.70 -17.01 5.48 -463.05 -2.54 -19.55 16 14 C 0.14 2.77 5.83 86.38 0.50 3.27 16 15 C 0.03 0.28 3.41 45.02 0.15 0.43 16 16 H 0.11 0.71 7.92 -2.39 -0.02 0.70 16 17 C -0.13 -1.02 7.84 31.23 0.24 -0.78 16 18 C 0.01 0.05 7.96 86.36 0.69 0.74 16 19 N -0.49 -5.56 5.78 -885.34 -5.12 -10.68 16 20 C 0.06 0.51 4.76 85.56 0.41 0.92 16 21 C -0.09 -1.18 5.46 -19.78 -0.11 -1.28 16 22 C 0.10 1.24 10.86 84.69 0.92 2.16 16 23 N -0.47 -8.12 10.36 -195.66 -2.03 -10.14 16 24 C 0.07 1.16 11.17 84.73 0.95 2.11 16 25 C 0.03 0.62 7.35 22.47 0.17 0.79 16 26 F -0.14 -3.35 17.28 44.97 0.78 -2.58 16 27 C -0.10 -1.87 9.85 22.51 0.22 -1.64 16 28 H 0.26 17.37 7.12 -92.70 -0.66 16.71 16 29 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 30 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 31 H 0.41 7.46 6.47 -92.71 -0.60 6.86 16 32 H 0.05 1.32 7.87 -2.39 -0.02 1.31 16 33 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 0.92 7.92 -2.38 -0.02 0.90 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.15 7.48 -2.38 -0.02 0.13 16 38 H 0.09 0.30 7.34 -2.39 -0.02 0.28 16 39 H 0.09 0.74 6.37 -2.39 -0.02 0.72 16 40 H 0.19 1.10 8.06 -2.91 -0.02 1.08 16 41 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 42 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -82.50 373.93 -0.77 -83.27 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 0.56 Total: 16.64 kcal Atomic # 6 Polarization: -19.24 SS G_CDS: 6.38 Total: -12.86 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -9.39 Total: -98.54 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.93 kcal Atomic # 16 Polarization: -10.71 SS G_CDS: -1.11 Total: -11.81 kcal Total: -82.50 -0.77 -83.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323180356.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.950 kcal (2) G-P(sol) polarization free energy of solvation -82.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds