Wall clock time and date at job start Tue Mar 31 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00380 * 2 1 4 4 H 1.48501 * 109.47105 * 270.00543 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00420 * 3 2 1 6 6 H 1.48494 * 109.47144 * 150.00454 * 3 2 1 7 7 C 1.38947 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00246 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99825 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00560 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47567 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00356 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99850 * 355.01760 * 14 13 12 16 16 N 1.34774 * 120.00239 * 175.01496 * 14 13 12 17 17 C 1.46934 * 120.63181 * 184.94389 * 16 14 13 18 18 C 1.52758 * 109.00861 * 233.58755 * 17 16 14 19 19 C 1.53035 * 109.38429 * 305.58996 * 18 17 16 20 20 O 1.42900 * 109.46303 * 301.21841 * 19 18 17 21 21 C 1.53006 * 109.46265 * 181.26114 * 19 18 17 22 22 F 1.39896 * 109.46796 * 299.93420 * 21 19 18 23 23 F 1.39903 * 109.46654 * 59.92941 * 21 19 18 24 24 F 1.39896 * 109.47569 * 179.97438 * 21 19 18 25 25 C 1.53039 * 109.54127 * 61.24022 * 19 18 17 26 26 C 1.46927 * 120.63074 * 5.23007 * 16 14 13 27 27 H 0.97006 * 119.99578 * 359.97438 * 1 2 3 28 28 H 0.96993 * 119.99874 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46966 * 59.99636 * 12 10 9 30 30 H 1.08992 * 109.47103 * 300.00323 * 12 10 9 31 31 H 0.97004 * 119.99681 * 0.02562 * 13 12 10 32 32 H 1.08994 * 109.58386 * 353.42390 * 17 16 14 33 33 H 1.08997 * 109.58173 * 113.84824 * 17 16 14 34 34 H 1.09002 * 109.56530 * 185.55372 * 18 17 16 35 35 H 1.09006 * 109.38665 * 65.51752 * 18 17 16 36 36 H 0.96702 * 113.99829 * 300.07053 * 20 19 18 37 37 H 1.08999 * 109.50315 * 178.68040 * 25 19 18 38 38 H 1.09003 * 109.52336 * 58.60132 * 25 19 18 39 39 H 1.08990 * 109.58576 * 246.15267 * 26 16 14 40 40 H 1.08995 * 109.58413 * 6.43575 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5580 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1955 -5.9765 -0.0016 14 6 1.7462 -7.2471 -0.0027 15 8 0.5546 -7.4707 0.0882 16 7 2.6179 -8.2700 -0.1046 17 6 2.1379 -9.6543 -0.2159 18 6 2.8041 -10.5005 0.8674 19 6 4.3238 -10.3516 0.7654 20 8 4.7569 -10.7670 -0.5315 21 6 4.9940 -11.2231 1.8296 22 9 4.5709 -10.8163 3.0995 23 9 4.6404 -12.5614 1.6268 24 9 6.3833 -11.0876 1.7362 25 6 4.7108 -8.8877 0.9875 26 6 4.0662 -8.0227 -0.1001 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6172 -4.9204 -0.8914 30 1 0.6166 -4.9209 0.8885 31 1 3.1492 -5.7993 -0.0012 32 1 1.0565 -9.6779 -0.0826 33 1 2.3960 -10.0526 -1.1971 34 1 2.5312 -11.5472 0.7324 35 1 2.4703 -10.1611 1.8480 36 1 4.5447 -11.6869 -0.7411 37 1 5.7949 -8.7864 0.9380 38 1 4.3594 -8.5626 1.9668 39 1 4.4846 -8.2853 -1.0716 40 1 4.2563 -6.9696 0.1071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325032936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:15 Heat of formation + Delta-G solvation = -260.198578 kcal Electronic energy + Delta-G solvation = -30234.968298 eV Core-core repulsion = 25249.085621 eV Total energy + Delta-G solvation = -4985.882677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.56699 -48.09366 -47.99981 -40.67544 -39.05169 -38.12751 -35.83187 -34.55553 -33.77940 -32.40110 -31.62514 -31.35256 -28.24465 -27.02652 -24.63687 -24.04048 -23.52037 -21.39104 -19.83158 -19.70026 -19.02886 -18.80044 -18.74340 -18.40838 -17.89860 -16.43807 -16.22675 -15.78669 -15.57994 -15.43408 -14.89726 -14.76375 -14.61605 -14.55815 -14.47717 -14.35342 -14.20353 -14.19481 -14.17615 -13.89424 -13.74426 -13.50466 -13.24508 -12.76644 -12.40517 -12.17554 -11.97192 -11.77568 -11.72244 -11.63490 -11.24525 -11.13333 -10.73918 -10.46832 -10.33008 -10.03092 -9.64751 -9.02883 -8.64467 -8.56372 -8.11265 -6.52504 -3.94565 2.15692 2.59299 3.10229 3.11245 3.19882 3.21583 3.26801 3.31560 3.42211 3.73444 3.78260 3.89926 4.09841 4.16065 4.19138 4.57425 4.82567 4.84436 4.87180 5.03215 5.10446 5.16328 5.17787 5.41348 5.51348 5.56466 5.75643 5.88497 5.98511 6.06141 6.33596 6.70094 6.73810 6.93216 7.45033 7.91195 8.07461 8.43731 8.69305 9.03512 9.38238 9.85884 10.64367 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.002213 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.987212 B =12649.898394 C =13226.400363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.599 6.599 12 C 0.127 3.873 13 N -0.724 5.724 14 C 0.710 3.290 15 O -0.594 6.594 16 N -0.633 5.633 17 C 0.142 3.858 18 C -0.166 4.166 19 C 0.105 3.895 20 O -0.523 6.523 21 C 0.423 3.577 22 F -0.176 7.176 23 F -0.185 7.185 24 F -0.175 7.175 25 C -0.127 4.127 26 C 0.120 3.880 27 H 0.274 0.726 28 H 0.396 0.604 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.406 0.594 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.386 0.614 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -23.610 1.105 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.486 6.486 12 C -0.002 4.002 13 N -0.383 5.383 14 C 0.411 3.589 15 O -0.473 6.473 16 N -0.371 5.371 17 C 0.018 3.982 18 C -0.205 4.205 19 C 0.061 3.939 20 O -0.329 6.329 21 C 0.368 3.632 22 F -0.158 7.158 23 F -0.166 7.166 24 F -0.156 7.156 25 C -0.165 4.165 26 C -0.004 4.004 27 H 0.084 0.916 28 H 0.230 0.770 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.121 0.879 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.236 0.764 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.970 -22.944 1.147 24.007 hybrid contribution 0.284 0.067 0.361 0.464 sum 7.254 -22.878 1.508 24.048 Atomic orbital electron populations 1.69617 1.06018 1.28537 1.49281 1.25327 0.95666 0.99942 0.96781 0.85813 0.79230 0.80493 0.78493 1.20262 1.20801 1.19313 1.19726 0.93453 0.81982 1.48272 0.87671 1.41785 1.09505 1.04451 1.62568 1.19746 0.88285 0.84994 0.85570 1.90487 1.13749 1.86867 1.57467 1.20810 0.91251 0.84891 1.03207 1.44970 1.11345 1.03330 1.78662 1.15726 0.84771 0.80597 0.77808 1.90896 1.14165 1.83874 1.58335 1.47195 1.05483 1.05852 1.78570 1.21158 1.00549 0.79195 0.97260 1.22643 0.92098 1.02547 1.03222 1.22358 0.94598 0.95029 0.81897 1.86704 1.82375 1.34124 1.29734 1.21644 0.77950 0.79853 0.83712 1.93202 1.89732 1.90147 1.42707 1.93169 1.91729 1.36858 1.94846 1.93206 1.30736 1.95559 1.96133 1.22055 1.03206 0.89601 1.01683 1.21514 0.79965 0.99840 0.99051 0.91575 0.77002 0.90006 0.89894 0.75356 0.87855 0.90831 0.88991 0.88870 0.76446 0.88414 0.88555 0.89812 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.71 13.05 55.50 0.72 -22.99 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.36 29.55 -169.99 -5.02 15.34 16 4 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 8 H 0.11 2.94 7.16 -52.48 -0.38 2.56 16 9 N -0.55 -13.43 5.29 -10.96 -0.06 -13.49 16 10 C 0.43 9.66 7.85 -10.99 -0.09 9.58 16 11 O -0.60 -15.00 15.24 5.54 0.08 -14.91 16 12 C 0.13 2.32 6.16 -5.20 -0.03 2.28 16 13 N -0.72 -11.97 5.44 -66.42 -0.36 -12.33 16 14 C 0.71 11.22 8.30 -86.92 -0.72 10.50 16 15 O -0.59 -11.14 15.77 5.29 0.08 -11.06 16 16 N -0.63 -7.45 2.98 -178.77 -0.53 -7.98 16 17 C 0.14 1.31 6.18 -3.93 -0.02 1.29 16 18 C -0.17 -1.19 4.82 -26.84 -0.13 -1.31 16 19 C 0.10 0.77 0.48 -90.58 -0.04 0.73 16 20 O -0.52 -3.43 11.65 -35.23 -0.41 -3.84 16 21 C 0.42 3.46 2.38 37.16 0.09 3.55 16 22 F -0.18 -1.64 16.33 2.25 0.04 -1.60 16 23 F -0.18 -1.42 16.39 2.25 0.04 -1.39 16 24 F -0.18 -1.64 16.71 2.25 0.04 -1.60 16 25 C -0.13 -1.06 4.86 -26.61 -0.13 -1.19 16 26 C 0.12 1.17 6.15 -3.71 -0.02 1.15 16 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 28 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 29 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 31 H 0.41 6.54 4.93 -40.82 -0.20 6.33 16 32 H 0.10 1.10 6.99 -51.93 -0.36 0.73 16 33 H 0.07 0.58 7.81 -51.93 -0.41 0.18 16 34 H 0.09 0.46 7.76 -51.93 -0.40 0.06 16 35 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 36 H 0.39 1.21 8.69 45.56 0.40 1.61 16 37 H 0.10 0.74 7.76 -51.93 -0.40 0.34 16 38 H 0.10 0.82 7.85 -51.93 -0.41 0.42 16 39 H 0.08 0.78 7.81 -51.93 -0.41 0.37 16 40 H 0.09 0.96 5.64 -51.93 -0.29 0.67 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -32.19 344.83 -5.10 -37.29 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -3.57 Total: 14.56 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: -1.34 Total: 18.80 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: -0.23 Total: -56.78 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.24 Total: -29.81 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.11 Total: -4.59 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.19 -5.10 -37.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325032936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -222.913 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -260.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds