Wall clock time and date at job start Tue Mar 31 2020 22:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86804 * 120.00380 * 2 1 4 4 H 1.48501 * 109.47105 * 270.00543 * 3 2 1 5 5 H 1.48503 * 109.46879 * 30.00420 * 3 2 1 6 6 H 1.48494 * 109.47144 * 150.00454 * 3 2 1 7 7 C 1.38947 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00246 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.34774 * 119.99825 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00560 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00092 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47567 * 179.97438 * 12 10 9 14 14 C 1.34772 * 120.00356 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99850 * 355.01760 * 14 13 12 16 16 N 1.34774 * 120.00239 * 175.01496 * 14 13 12 17 17 C 1.46934 * 120.63181 * 184.94389 * 16 14 13 18 18 C 1.52758 * 109.00861 * 233.58755 * 17 16 14 19 19 C 1.53035 * 109.38429 * 305.58996 * 18 17 16 20 20 O 1.42900 * 109.46303 * 301.21841 * 19 18 17 21 21 C 1.53006 * 109.46265 * 181.26114 * 19 18 17 22 22 F 1.39896 * 109.46796 * 299.93420 * 21 19 18 23 23 F 1.39903 * 109.46654 * 59.92941 * 21 19 18 24 24 F 1.39896 * 109.47569 * 179.97438 * 21 19 18 25 25 C 1.53039 * 109.54127 * 61.24022 * 19 18 17 26 26 C 1.46927 * 120.63074 * 5.23007 * 16 14 13 27 27 H 0.97006 * 119.99578 * 359.97438 * 1 2 3 28 28 H 0.96993 * 119.99874 * 0.02562 * 9 7 2 29 29 H 1.09004 * 109.46966 * 59.99636 * 12 10 9 30 30 H 1.08992 * 109.47103 * 300.00323 * 12 10 9 31 31 H 0.97004 * 119.99681 * 0.02562 * 13 12 10 32 32 H 1.08994 * 109.58386 * 353.42390 * 17 16 14 33 33 H 1.08997 * 109.58173 * 113.84824 * 17 16 14 34 34 H 1.09002 * 109.56530 * 185.55372 * 18 17 16 35 35 H 1.09006 * 109.38665 * 65.51752 * 18 17 16 36 36 H 0.96702 * 113.99829 * 300.07053 * 20 19 18 37 37 H 1.08999 * 109.50315 * 178.68040 * 25 19 18 38 38 H 1.09003 * 109.52336 * 58.60132 * 25 19 18 39 39 H 1.08990 * 109.58576 * 246.15267 * 26 16 14 40 40 H 1.08995 * 109.58413 * 6.43575 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3232 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5580 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1955 -5.9765 -0.0016 14 6 1.7462 -7.2471 -0.0027 15 8 0.5546 -7.4707 0.0882 16 7 2.6179 -8.2700 -0.1046 17 6 2.1379 -9.6543 -0.2159 18 6 2.8041 -10.5005 0.8674 19 6 4.3238 -10.3516 0.7654 20 8 4.7569 -10.7670 -0.5315 21 6 4.9940 -11.2231 1.8296 22 9 4.5709 -10.8163 3.0995 23 9 4.6404 -12.5614 1.6268 24 9 6.3833 -11.0876 1.7362 25 6 4.7108 -8.8877 0.9875 26 6 4.0662 -8.0227 -0.1001 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 -0.0005 29 1 0.6172 -4.9204 -0.8914 30 1 0.6166 -4.9209 0.8885 31 1 3.1492 -5.7993 -0.0012 32 1 1.0565 -9.6779 -0.0826 33 1 2.3960 -10.0526 -1.1971 34 1 2.5312 -11.5472 0.7324 35 1 2.4703 -10.1611 1.8480 36 1 4.5447 -11.6869 -0.7411 37 1 5.7949 -8.7864 0.9380 38 1 4.3594 -8.5626 1.9668 39 1 4.4846 -8.2853 -1.0716 40 1 4.2563 -6.9696 0.1071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325032936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:14 Heat of formation + Delta-G solvation = -285.355845 kcal Electronic energy + Delta-G solvation = -30236.059199 eV Core-core repulsion = 25249.085621 eV Total energy + Delta-G solvation = -4986.973578 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.22367 -48.73417 -48.68599 -41.70433 -40.32257 -39.54696 -36.67922 -36.26449 -35.38534 -33.39839 -33.12315 -32.35782 -29.48789 -28.13876 -26.37293 -24.80397 -24.40733 -22.21175 -21.38734 -20.85538 -20.14886 -19.70168 -19.56308 -19.41034 -19.16822 -17.58408 -17.24769 -17.09454 -16.91162 -16.50844 -16.13762 -15.96966 -15.83389 -15.53831 -15.34067 -15.20376 -15.09194 -15.07296 -14.88885 -14.85883 -14.82069 -14.66831 -14.20001 -13.89267 -13.53622 -13.53404 -13.44081 -13.02471 -12.89469 -12.53016 -12.44412 -12.38018 -12.11959 -11.96204 -11.55767 -11.36372 -11.28156 -10.54305 -10.31928 -10.08406 -9.60906 -8.49942 -5.99959 1.37411 1.42298 1.46565 1.55031 1.58771 1.90624 2.05910 2.28676 2.57074 2.60290 2.77661 2.80000 3.14912 3.17534 3.18121 3.49466 3.55413 3.87000 4.09457 4.18777 4.22572 4.35831 4.39466 4.45095 4.47835 4.54341 4.71330 4.77886 4.87921 5.06635 5.30715 5.39884 5.44878 5.82814 5.93486 6.41509 6.49126 6.85746 7.04727 7.41446 7.49164 7.95646 8.67010 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024817 B = 0.002213 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.987212 B =12649.898394 C =13226.400363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.140 3.860 13 N -0.726 5.726 14 C 0.707 3.293 15 O -0.626 6.626 16 N -0.625 5.625 17 C 0.138 3.862 18 C -0.159 4.159 19 C 0.115 3.885 20 O -0.527 6.527 21 C 0.425 3.575 22 F -0.184 7.184 23 F -0.180 7.180 24 F -0.182 7.182 25 C -0.128 4.128 26 C 0.120 3.880 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.403 0.597 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.547 -24.644 0.801 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.012 3.988 13 N -0.386 5.386 14 C 0.409 3.591 15 O -0.508 6.508 16 N -0.363 5.363 17 C 0.016 3.984 18 C -0.197 4.197 19 C 0.071 3.929 20 O -0.336 6.336 21 C 0.370 3.630 22 F -0.166 7.166 23 F -0.161 7.161 24 F -0.164 7.164 25 C -0.166 4.166 26 C -0.003 4.003 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.249 0.751 32 H 0.107 0.893 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.102 0.898 36 H 0.255 0.745 37 H 0.125 0.875 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.567 -24.040 0.835 25.216 hybrid contribution 0.144 0.263 0.437 0.529 sum 7.711 -23.777 1.272 25.028 Atomic orbital electron populations 1.69683 1.07013 1.29606 1.49366 1.26122 0.96523 1.02672 0.95835 0.84875 0.77930 0.76528 0.78703 1.19562 1.19744 1.19412 1.19734 0.92967 0.83506 1.50295 0.89517 1.41832 1.09605 1.04584 1.63446 1.20402 0.88118 0.85874 0.83486 1.90464 1.15137 1.87552 1.58021 1.20602 0.91027 0.83107 1.04100 1.44913 1.11088 1.03382 1.79198 1.15833 0.84810 0.80820 0.77650 1.90872 1.15674 1.84327 1.59888 1.47288 1.05894 1.05951 1.77122 1.21352 0.99976 0.77982 0.99095 1.22592 0.91663 1.03634 1.01846 1.22160 0.94455 0.94169 0.82133 1.86683 1.82383 1.35695 1.28847 1.21733 0.77606 0.80122 0.83514 1.93190 1.89769 1.90261 1.43363 1.93178 1.91633 1.36553 1.94782 1.93193 1.31404 1.95622 1.96142 1.22035 1.03595 0.90137 1.00844 1.21604 0.78720 0.99780 1.00179 0.91093 0.76693 0.88933 0.89057 0.75087 0.89269 0.88876 0.86257 0.89840 0.74510 0.87541 0.88982 0.88767 0.89807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.46 13.05 21.66 0.28 -48.18 16 2 C -0.01 -0.56 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.44 29.55 68.60 2.03 43.47 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.34 -18.31 9.68 84.04 0.81 -17.50 16 8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16 9 N -0.56 -27.80 5.29 -306.98 -1.62 -29.42 16 10 C 0.43 19.76 7.85 87.66 0.69 20.45 16 11 O -0.62 -31.60 15.24 -3.08 -0.05 -31.65 16 12 C 0.14 5.09 6.16 85.63 0.53 5.62 16 13 N -0.73 -23.78 5.44 -482.32 -2.62 -26.40 16 14 C 0.71 21.98 8.30 179.06 1.49 23.47 16 15 O -0.63 -23.29 15.77 -3.98 -0.06 -23.35 16 16 N -0.63 -14.01 2.98 -837.77 -2.50 -16.51 16 17 C 0.14 2.31 6.18 86.22 0.53 2.84 16 18 C -0.16 -1.92 4.82 30.53 0.15 -1.77 16 19 C 0.11 1.44 0.48 -10.77 -0.01 1.43 16 20 O -0.53 -5.41 11.65 -148.98 -1.74 -7.14 16 21 C 0.42 6.12 2.38 71.98 0.17 6.29 16 22 F -0.18 -3.17 16.33 44.97 0.73 -2.43 16 23 F -0.18 -2.35 16.39 44.97 0.74 -1.61 16 24 F -0.18 -3.10 16.71 44.97 0.75 -2.34 16 25 C -0.13 -1.94 4.86 30.67 0.15 -1.79 16 26 C 0.12 2.19 6.15 86.36 0.53 2.72 16 27 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 28 H 0.40 19.09 7.90 -92.71 -0.73 18.35 16 29 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 30 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.41 13.08 4.93 -92.71 -0.46 12.63 16 32 H 0.09 1.80 6.99 -2.39 -0.02 1.79 16 33 H 0.09 1.22 7.81 -2.39 -0.02 1.21 16 34 H 0.12 0.81 7.76 -2.39 -0.02 0.80 16 35 H 0.08 1.23 7.85 -2.38 -0.02 1.21 16 36 H 0.40 1.19 8.69 -74.06 -0.64 0.55 16 37 H 0.11 1.45 7.76 -2.39 -0.02 1.43 16 38 H 0.09 1.48 7.85 -2.39 -0.02 1.47 16 39 H 0.09 1.57 7.81 -2.39 -0.02 1.55 16 40 H 0.08 1.70 5.64 -2.39 -0.01 1.68 16 Total: -1.00 -68.42 344.83 0.77 -67.65 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.68 Total: 36.24 kcal Atomic # 6 Polarization: 36.17 SS G_CDS: 5.51 Total: 41.68 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -6.46 Total: -120.50 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -1.85 Total: -62.14 kcal Atomic # 9 Polarization: -8.61 SS G_CDS: 2.22 Total: -6.39 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -68.42 0.77 -67.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325032936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.704 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -286.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -285.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds