Wall clock time and date at job start Tue Mar 31 2020 22:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48503 * 109.46583 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47105 * 29.99870 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00299 * 3 2 1 7 7 C 1.38956 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99811 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 C 1.33927 * 125.84244 * 124.71360 * 19 18 17 21 21 N 1.39539 * 107.26603 * 179.85439 * 20 19 18 22 22 C 1.34874 * 106.08114 * 0.40594 * 21 20 19 23 23 N 1.31917 * 109.25415 * 359.74938 * 22 21 20 24 24 S 1.76904 * 110.04631 * 179.74957 * 22 21 20 25 25 C 1.81818 * 96.10977 * 359.97438 * 24 22 21 26 26 C 1.45965 * 136.73996 * 180.02562 * 21 20 19 27 27 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.46995 * 60.00543 * 12 10 9 30 30 H 1.08994 * 109.46942 * 300.00312 * 12 10 9 31 31 H 0.97003 * 120.00113 * 0.02562 * 13 12 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 34 34 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 35 35 H 1.09002 * 109.47153 * 300.00008 * 18 17 16 36 36 H 1.08998 * 109.47533 * 59.99637 * 18 17 16 37 37 H 1.07998 * 126.36536 * 359.97326 * 20 19 18 38 38 H 1.08996 * 110.50781 * 241.33593 * 25 24 22 39 39 H 1.09007 * 110.58322 * 118.74908 * 25 24 22 40 40 H 1.09007 * 108.89529 * 301.16215 * 26 21 20 41 41 H 1.09003 * 108.89347 * 59.58739 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0537 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0020 12 6 5.5607 -2.3708 0.0011 13 7 6.0489 -3.7521 0.0017 14 6 7.3740 -3.9984 0.0023 15 8 8.1641 -3.0743 0.0019 16 7 7.8231 -5.2691 0.0023 17 6 9.2634 -5.5369 0.0036 18 6 9.5012 -7.0482 0.0040 19 6 10.9828 -7.3237 0.0047 20 6 11.6404 -8.0748 0.8975 21 7 12.9867 -8.0705 0.5307 22 6 13.0708 -7.2997 -0.5729 23 7 11.8690 -6.8543 -0.8850 24 16 14.7486 -7.2159 -1.1275 25 6 15.4378 -8.2745 0.1801 26 6 14.2266 -8.6560 1.0311 27 1 -0.4849 0.8401 0.0004 28 1 3.8648 -0.3634 -0.0004 29 1 5.9240 -1.8563 0.8906 30 1 5.9240 -1.8577 -0.8893 31 1 5.4184 -4.4893 0.0016 32 1 7.1928 -6.0063 0.0023 33 1 9.7154 -5.0979 -0.8859 34 1 9.7138 -5.0983 0.8941 35 1 9.0493 -7.4869 0.8937 36 1 9.0508 -7.4872 -0.8862 37 1 11.2086 -8.5896 1.7430 38 1 16.1635 -7.7215 0.7764 39 1 15.8978 -9.1644 -0.2499 40 1 14.3913 -8.3139 2.0530 41 1 14.1272 -9.7415 1.0370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328703255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:55 Heat of formation + Delta-G solvation = 14.535409 kcal Electronic energy + Delta-G solvation = -24956.005261 eV Core-core repulsion = 20998.938305 eV Total energy + Delta-G solvation = -3957.066955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.53577 -39.80945 -38.35326 -36.65053 -35.18368 -34.38627 -33.64870 -31.95790 -31.72197 -30.92326 -28.73283 -27.29485 -25.12619 -24.45284 -23.34310 -21.60468 -20.86221 -20.37298 -19.58920 -18.75765 -18.35620 -17.93822 -17.17413 -16.24055 -16.13496 -15.69896 -15.53374 -15.04887 -15.01663 -14.78924 -14.65329 -14.44048 -14.07814 -13.92917 -13.69310 -13.63834 -13.12305 -13.02326 -12.86644 -12.43318 -12.18404 -12.11595 -12.07616 -11.59932 -11.33643 -11.19310 -10.60335 -10.40485 -10.08291 -10.03998 -10.00640 -9.78883 -9.65515 -9.10787 -8.71612 -8.58333 -8.26130 -8.00551 -6.37134 -3.89442 0.42618 1.28928 1.30305 1.98444 2.49028 2.89343 3.03696 3.08457 3.16148 3.29338 3.44002 3.63366 3.75624 4.07378 4.10690 4.30959 4.39012 4.53582 4.55108 4.63444 4.72662 4.75577 4.94610 5.18160 5.19061 5.30371 5.50274 5.71978 5.84285 5.86744 5.93230 5.97360 6.13655 6.29353 6.56416 6.72881 7.12796 7.43131 7.49312 8.04629 8.27142 8.48872 8.83411 8.85944 9.34176 9.68365 10.75101 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.037288 B = 0.001487 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.735654 B =18821.627910 C =19304.807033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.121 0.879 9 N -0.577 5.577 10 C 0.440 3.560 11 O -0.579 6.579 12 C 0.126 3.874 13 N -0.726 5.726 14 C 0.706 3.294 15 O -0.597 6.597 16 N -0.750 5.750 17 C 0.148 3.852 18 C -0.044 4.044 19 C 0.034 3.966 20 C -0.026 4.026 21 N -0.488 5.488 22 C 0.192 3.808 23 N -0.444 5.444 24 S 0.002 5.998 25 C -0.123 4.123 26 C 0.097 3.903 27 H 0.275 0.725 28 H 0.375 0.625 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.407 0.593 32 H 0.397 0.603 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.180 0.820 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.439 -19.792 3.387 38.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.215 5.215 10 C 0.226 3.774 11 O -0.464 6.464 12 C -0.002 4.002 13 N -0.384 5.384 14 C 0.405 3.595 15 O -0.476 6.476 16 N -0.406 5.406 17 C 0.024 3.976 18 C -0.083 4.083 19 C -0.097 4.097 20 C -0.158 4.158 21 N -0.178 5.178 22 C -0.179 4.179 23 N -0.167 5.167 24 S 0.231 5.769 25 C -0.272 4.272 26 C -0.026 4.026 27 H 0.086 0.914 28 H 0.208 0.792 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.245 0.755 32 H 0.230 0.770 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.197 0.803 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.120 0.880 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 32.984 -18.536 1.926 37.885 hybrid contribution -0.452 -0.448 1.773 1.883 sum 32.532 -18.984 3.699 37.847 Atomic orbital electron populations 1.69623 1.05712 1.27758 1.48374 1.25059 0.95522 0.98146 0.97159 0.86672 0.79936 0.83757 0.79154 1.19394 1.20032 1.19179 1.19444 0.79002 0.96779 1.48591 0.86105 1.42116 1.07664 1.06159 1.65564 1.19684 0.88143 0.84839 0.84774 1.90530 1.69294 1.30938 1.55614 1.20790 0.93200 0.83028 1.03225 1.44746 1.05231 1.09214 1.79191 1.15815 0.82488 0.83221 0.77978 1.90909 1.55185 1.43200 1.58311 1.45021 1.07988 1.06301 1.81286 1.21017 0.79637 0.93901 1.03060 1.20066 0.88095 0.96377 1.03759 1.20277 0.95708 0.99996 0.93742 1.22569 0.80171 1.08637 1.04374 1.46911 1.07590 1.39646 1.23677 1.25616 0.99999 1.00043 0.92207 1.70424 0.95965 1.23702 1.26577 1.86378 0.91734 1.63196 1.35614 1.24387 0.99554 1.04292 0.98949 1.21536 0.81060 1.00613 0.99437 0.91436 0.79219 0.89935 0.89892 0.75508 0.76984 0.90705 0.91850 0.89568 0.89480 0.80311 0.85748 0.85757 0.88017 0.88053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.23 13.96 55.50 0.77 -24.46 16 2 C 0.05 1.22 5.50 -17.46 -0.10 1.13 16 3 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 7 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 8 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 9 N -0.58 -13.67 5.09 -10.96 -0.06 -13.73 16 10 C 0.44 9.87 7.85 -10.98 -0.09 9.78 16 11 O -0.58 -14.80 15.24 5.54 0.08 -14.71 16 12 C 0.13 2.29 6.15 -5.19 -0.03 2.26 16 13 N -0.73 -12.16 5.53 -66.42 -0.37 -12.53 16 14 C 0.71 11.72 8.57 -86.92 -0.74 10.98 16 15 O -0.60 -12.11 16.34 5.29 0.09 -12.02 16 16 N -0.75 -9.20 5.56 -65.22 -0.36 -9.56 16 17 C 0.15 1.73 5.64 -4.04 -0.02 1.71 16 18 C -0.04 -0.37 5.89 -27.89 -0.16 -0.53 16 19 C 0.03 0.34 6.32 -83.13 -0.53 -0.19 16 20 C -0.03 -0.20 11.88 -15.55 -0.18 -0.38 16 21 N -0.49 -3.65 3.39 -116.92 -0.40 -4.05 16 22 C 0.19 1.99 8.90 -89.33 -0.80 1.19 16 23 N -0.44 -5.64 11.30 -9.81 -0.11 -5.75 16 24 S 0.00 0.01 23.24 -107.50 -2.50 -2.49 16 25 C -0.12 -0.22 7.37 37.09 0.27 0.06 16 26 C 0.10 0.27 7.44 -4.40 -0.03 0.23 16 27 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 29 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.41 6.56 7.45 -40.82 -0.30 6.25 16 32 H 0.40 3.69 8.49 -40.82 -0.35 3.34 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.12 -0.01 8.14 -51.93 -0.42 -0.44 16 39 H 0.12 -0.04 8.14 -51.92 -0.42 -0.47 16 40 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 41 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -38.27 366.63 -9.69 -47.96 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -5.09 Total: 13.75 kcal Atomic # 6 Polarization: 20.02 SS G_CDS: -2.56 Total: 17.46 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -0.52 Total: -70.07 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: 0.17 Total: -26.73 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.50 Total: -2.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.27 -9.69 -47.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328703255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.494 kcal (2) G-P(sol) polarization free energy of solvation -38.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds