Wall clock time and date at job start Tue Mar 31 2020 22:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00270 * 2 1 4 4 H 1.48503 * 109.46583 * 269.99712 * 3 2 1 5 5 H 1.48496 * 109.47105 * 29.99870 * 3 2 1 6 6 H 1.48496 * 109.47061 * 150.00299 * 3 2 1 7 7 C 1.38956 * 119.99639 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99811 * 179.97438 * 7 2 1 10 10 C 1.34778 * 119.99970 * 179.97438 * 9 7 2 11 11 O 1.21296 * 119.99688 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00015 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46708 * 180.02562 * 12 10 9 14 14 C 1.34781 * 119.99511 * 180.02562 * 13 12 10 15 15 O 1.21584 * 119.99970 * 359.97438 * 14 13 12 16 16 N 1.34771 * 119.99489 * 180.02562 * 14 13 12 17 17 C 1.46505 * 119.99622 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47212 * 179.97438 * 17 16 14 19 19 C 1.50697 * 109.47466 * 179.97438 * 18 17 16 20 20 C 1.33927 * 125.84244 * 124.71360 * 19 18 17 21 21 N 1.39539 * 107.26603 * 179.85439 * 20 19 18 22 22 C 1.34874 * 106.08114 * 0.40594 * 21 20 19 23 23 N 1.31917 * 109.25415 * 359.74938 * 22 21 20 24 24 S 1.76904 * 110.04631 * 179.74957 * 22 21 20 25 25 C 1.81818 * 96.10977 * 359.97438 * 24 22 21 26 26 C 1.45965 * 136.73996 * 180.02562 * 21 20 19 27 27 H 0.97003 * 119.99526 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99939 * 0.02562 * 9 7 2 29 29 H 1.08994 * 109.46995 * 60.00543 * 12 10 9 30 30 H 1.08994 * 109.46942 * 300.00312 * 12 10 9 31 31 H 0.97003 * 120.00113 * 0.02562 * 13 12 10 32 32 H 0.96996 * 120.00772 * 359.97438 * 16 14 13 33 33 H 1.09002 * 109.47068 * 299.99729 * 17 16 14 34 34 H 1.09001 * 109.47372 * 59.99816 * 17 16 14 35 35 H 1.09002 * 109.47153 * 300.00008 * 18 17 16 36 36 H 1.08998 * 109.47533 * 59.99637 * 18 17 16 37 37 H 1.07998 * 126.36536 * 359.97326 * 20 19 18 38 38 H 1.08996 * 110.50781 * 241.33593 * 25 24 22 39 39 H 1.09007 * 110.58322 * 118.74908 * 25 24 22 40 40 H 1.09007 * 108.89529 * 301.16215 * 26 21 20 41 41 H 1.09003 * 108.89347 * 59.58739 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0462 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0537 -2.3707 0.0011 11 8 3.4471 -3.4211 0.0020 12 6 5.5607 -2.3708 0.0011 13 7 6.0489 -3.7521 0.0017 14 6 7.3740 -3.9984 0.0023 15 8 8.1641 -3.0743 0.0019 16 7 7.8231 -5.2691 0.0023 17 6 9.2634 -5.5369 0.0036 18 6 9.5012 -7.0482 0.0040 19 6 10.9828 -7.3237 0.0047 20 6 11.6404 -8.0748 0.8975 21 7 12.9867 -8.0705 0.5307 22 6 13.0708 -7.2997 -0.5729 23 7 11.8690 -6.8543 -0.8850 24 16 14.7486 -7.2159 -1.1275 25 6 15.4378 -8.2745 0.1801 26 6 14.2266 -8.6560 1.0311 27 1 -0.4849 0.8401 0.0004 28 1 3.8648 -0.3634 -0.0004 29 1 5.9240 -1.8563 0.8906 30 1 5.9240 -1.8577 -0.8893 31 1 5.4184 -4.4893 0.0016 32 1 7.1928 -6.0063 0.0023 33 1 9.7154 -5.0979 -0.8859 34 1 9.7138 -5.0983 0.8941 35 1 9.0493 -7.4869 0.8937 36 1 9.0508 -7.4872 -0.8862 37 1 11.2086 -8.5896 1.7430 38 1 16.1635 -7.7215 0.7764 39 1 15.8978 -9.1644 -0.2499 40 1 14.3913 -8.3139 2.0530 41 1 14.1272 -9.7415 1.0370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328703255.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:54 Heat of formation + Delta-G solvation = -16.562012 kcal Electronic energy + Delta-G solvation = -24957.353746 eV Core-core repulsion = 20998.938305 eV Total energy + Delta-G solvation = -3958.415441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.09950 -41.21124 -40.13633 -37.26611 -36.30295 -35.98067 -35.27691 -33.82246 -32.70237 -31.42102 -29.79003 -28.53101 -26.21837 -25.45281 -24.34495 -22.17036 -21.95941 -21.45484 -21.19269 -20.55726 -19.42868 -18.81575 -17.63555 -17.46157 -17.29604 -17.04340 -16.70233 -16.55963 -16.07608 -15.83113 -15.48204 -15.42650 -15.10169 -14.92661 -14.80396 -14.70574 -14.30228 -13.98592 -13.97980 -13.67060 -13.51643 -13.27766 -12.96138 -12.87808 -12.46085 -12.43417 -11.99201 -11.72281 -11.56958 -11.46833 -11.06455 -10.63748 -10.60648 -10.43474 -10.36286 -10.30484 -9.80613 -8.53270 -8.44553 -6.06202 -0.02028 0.73077 0.96664 1.32233 1.35242 1.44289 1.51365 1.67856 1.80144 1.89036 2.12912 2.21460 2.80943 3.07253 3.11949 3.32209 3.59627 3.72394 3.99871 4.00764 4.09244 4.20402 4.27713 4.42242 4.45947 4.49850 4.50758 4.52808 4.62410 4.93231 5.03900 5.06323 5.30811 5.44459 5.50461 5.55418 5.83367 5.89479 5.98636 6.50159 6.79265 6.82293 7.05642 7.30063 7.54409 7.79389 8.71834 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.037288 B = 0.001487 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.735654 B =18821.627910 C =19304.807033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.006 4.006 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.233 1.233 7 C -0.332 4.332 8 H 0.065 0.935 9 N -0.578 5.578 10 C 0.447 3.553 11 O -0.613 6.613 12 C 0.137 3.863 13 N -0.725 5.725 14 C 0.704 3.296 15 O -0.634 6.634 16 N -0.730 5.730 17 C 0.156 3.844 18 C -0.031 4.031 19 C 0.000 4.000 20 C -0.013 4.013 21 N -0.485 5.485 22 C 0.166 3.834 23 N -0.500 5.500 24 S -0.047 6.047 25 C -0.102 4.102 26 C 0.086 3.914 27 H 0.281 0.719 28 H 0.392 0.608 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.411 0.589 32 H 0.414 0.586 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.089 0.911 37 H 0.216 0.784 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.123 0.877 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 35.417 -20.452 4.957 41.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.206 4.206 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.083 0.917 9 N -0.218 5.218 10 C 0.235 3.765 11 O -0.499 6.499 12 C 0.009 3.991 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.516 6.516 16 N -0.386 5.386 17 C 0.031 3.969 18 C -0.069 4.069 19 C -0.131 4.131 20 C -0.146 4.146 21 N -0.173 5.173 22 C -0.205 4.205 23 N -0.224 5.224 24 S 0.182 5.818 25 C -0.250 4.250 26 C -0.036 4.036 27 H 0.091 0.909 28 H 0.227 0.773 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.250 0.750 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.137 0.863 36 H 0.108 0.892 37 H 0.233 0.767 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.141 0.859 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 35.999 -19.263 3.502 40.979 hybrid contribution -1.331 -0.430 1.308 1.915 sum 34.669 -19.693 4.810 40.161 Atomic orbital electron populations 1.69781 1.07988 1.29414 1.49344 1.26036 0.96403 1.02488 0.95709 0.85462 0.79593 0.77153 0.80036 1.18193 1.19754 1.15667 1.19046 0.80940 0.95316 1.50748 0.91739 1.41918 1.06140 1.07410 1.66341 1.20469 0.89944 0.83889 0.82246 1.90519 1.70749 1.32259 1.56338 1.20687 0.89297 0.84266 1.04859 1.44679 1.05448 1.08803 1.79384 1.15936 0.81902 0.84040 0.77743 1.90886 1.55932 1.44712 1.60077 1.44887 1.08719 1.05426 1.79617 1.20947 0.78569 0.96385 1.00956 1.20011 0.87952 0.93535 1.05448 1.20588 0.96199 1.01637 0.94629 1.23094 0.80216 1.07163 1.04103 1.47283 1.08765 1.38621 1.22681 1.25937 1.00269 1.00814 0.93501 1.70301 0.97687 1.25701 1.28671 1.86410 0.91154 1.65293 1.38954 1.24659 0.99352 1.04204 0.96815 1.21971 0.79423 1.01935 1.00264 0.90938 0.77250 0.88121 0.88259 0.75078 0.74960 0.93815 0.92993 0.86297 0.89246 0.76714 0.83383 0.83103 0.85865 0.85553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.96 21.67 0.30 -54.44 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.96 38.77 27.74 68.60 1.90 40.68 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 7 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 8 H 0.06 4.35 7.39 -2.91 -0.02 4.32 16 9 N -0.58 -27.07 5.09 -306.97 -1.56 -28.63 16 10 C 0.45 19.89 7.85 87.66 0.69 20.58 16 11 O -0.61 -31.81 15.24 -3.08 -0.05 -31.86 16 12 C 0.14 4.76 6.15 85.63 0.53 5.29 16 13 N -0.73 -23.42 5.53 -482.30 -2.67 -26.08 16 14 C 0.70 22.75 8.57 179.05 1.53 24.29 16 15 O -0.63 -25.38 16.34 -3.98 -0.07 -25.44 16 16 N -0.73 -17.20 5.56 -478.53 -2.66 -19.86 16 17 C 0.16 3.64 5.64 86.38 0.49 4.13 16 18 C -0.03 -0.48 5.89 29.85 0.18 -0.31 16 19 C 0.00 0.00 6.32 41.24 0.26 0.26 16 20 C -0.01 -0.17 11.88 82.48 0.98 0.81 16 21 N -0.48 -6.35 3.39 -523.81 -1.78 -8.13 16 22 C 0.17 3.44 8.90 179.90 1.60 5.04 16 23 N -0.50 -13.18 11.30 -184.94 -2.09 -15.27 16 24 S -0.05 -0.64 23.24 -56.49 -1.31 -1.96 16 25 C -0.10 -0.06 7.37 71.94 0.53 0.47 16 26 C 0.09 0.18 7.44 86.43 0.64 0.82 16 27 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.39 15.53 5.76 -92.71 -0.53 14.99 16 29 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.41 12.85 7.45 -92.71 -0.69 12.15 16 32 H 0.41 6.98 8.49 -92.71 -0.79 6.20 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.12 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.22 1.01 8.06 -2.91 -0.02 0.98 16 38 H 0.15 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.15 -0.68 8.14 -2.38 -0.02 -0.70 16 40 H 0.12 -0.21 8.14 -2.38 -0.02 -0.23 16 41 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -89.94 366.63 -2.19 -92.13 By element: Atomic # 1 Polarization: 36.49 SS G_CDS: -0.96 Total: 35.53 kcal Atomic # 6 Polarization: 34.59 SS G_CDS: 8.75 Total: 43.34 kcal Atomic # 7 Polarization: -141.96 SS G_CDS: -10.45 Total: -152.42 kcal Atomic # 8 Polarization: -57.18 SS G_CDS: -0.11 Total: -57.30 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 1.90 Total: 40.68 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -1.31 Total: -1.96 kcal Total: -89.94 -2.19 -92.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328703255.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.564 kcal (2) G-P(sol) polarization free energy of solvation -89.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds