Wall clock time and date at job start Tue Mar 31 2020 22:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48499 * 109.46995 * 270.00056 * 3 2 1 5 5 H 1.48498 * 109.46969 * 29.99933 * 3 2 1 6 6 H 1.48504 * 109.47110 * 149.99803 * 3 2 1 7 7 C 1.37881 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00195 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47259 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99623 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99928 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46914 * 179.97438 * 14 13 11 16 16 O 1.21272 * 119.99986 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99725 * 179.97438 * 15 14 13 18 18 C 1.38725 * 120.00193 * 179.97438 * 17 15 14 19 19 N 1.30974 * 126.35494 * 0.02854 * 18 17 15 20 20 N 1.28658 * 109.31651 * 179.97438 * 19 18 17 21 21 C 1.30130 * 109.51945 * 0.02562 * 20 19 18 22 22 C 1.50701 * 126.22037 * 180.02562 * 21 20 19 23 23 H 1.09007 * 109.86983 * 163.97228 * 22 21 20 24 24 C 1.54095 * 109.88145 * 284.97799 * 22 21 20 25 25 C 1.54811 * 104.18886 * 121.45634 * 24 22 21 26 26 C 1.54990 * 102.09134 * 20.87794 * 25 24 22 27 27 O 1.43747 * 109.87700 * 42.81062 * 22 21 20 28 28 O 1.34570 * 126.36306 * 179.97438 * 18 17 15 29 29 H 0.97001 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46906 * 60.00424 * 9 7 2 31 31 H 1.09004 * 109.46817 * 300.00238 * 9 7 2 32 32 H 1.09002 * 109.47528 * 59.99918 * 10 9 7 33 33 H 1.09004 * 109.47270 * 299.99599 * 10 9 7 34 34 H 1.09001 * 109.47182 * 59.99564 * 14 13 11 35 35 H 1.09001 * 109.46851 * 299.99334 * 14 13 11 36 36 H 0.97003 * 120.00046 * 0.02562 * 17 15 14 37 37 H 1.09004 * 110.48700 * 240.12845 * 24 22 21 38 38 H 1.08995 * 110.49176 * 2.77532 * 24 22 21 39 39 H 1.09006 * 110.91033 * 139.08038 * 25 24 22 40 40 H 1.09002 * 110.90030 * 262.64338 * 25 24 22 41 41 H 1.09008 * 110.61764 * 81.48211 * 26 25 24 42 42 H 1.09008 * 110.61957 * 204.47458 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9673 -0.0012 12 8 0.2836 -4.9672 -0.0011 13 8 2.1629 -6.1296 -0.0008 14 6 1.3721 -7.3474 -0.0020 15 6 2.2901 -8.5425 -0.0020 16 8 3.4924 -8.3836 -0.0014 17 7 1.7750 -9.7880 -0.0025 18 6 2.6200 -10.8882 -0.0030 19 7 3.9294 -10.8614 -0.0025 20 7 4.3797 -12.0666 -0.0027 21 6 3.3830 -12.9032 -0.0038 22 6 3.4825 -14.4069 -0.0039 23 1 2.5235 -14.8417 0.2781 24 6 3.8923 -14.9049 -1.4034 25 6 5.2067 -15.6854 -1.1585 26 6 5.1143 -16.0105 0.3541 27 8 4.5033 -14.8292 0.9159 28 8 2.2465 -12.1810 -0.0030 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6044 0.8894 33 1 2.8719 -3.6044 -0.8906 34 1 0.7442 -7.3720 -0.8926 35 1 0.7424 -7.3726 0.8874 36 1 0.8133 -9.9151 -0.0033 37 1 3.1274 -15.5649 -1.8126 38 1 4.0679 -14.0622 -2.0720 39 1 5.2327 -16.5994 -1.7520 40 1 6.0748 -15.0613 -1.3706 41 1 4.4847 -16.8847 0.5210 42 1 6.1079 -16.1659 0.7747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330069722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:41 Heat of formation + Delta-G solvation = -106.471047 kcal Electronic energy + Delta-G solvation = -27614.644511 eV Core-core repulsion = 23177.284700 eV Total energy + Delta-G solvation = -4437.359811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.61011 -40.75753 -40.07031 -39.74677 -36.60079 -36.35983 -35.64677 -33.63833 -32.94729 -32.06038 -31.27826 -29.80758 -28.37198 -25.99065 -24.85916 -24.22355 -22.77719 -22.31473 -21.95981 -21.09740 -20.01415 -19.30328 -18.13862 -17.83350 -17.69787 -17.17151 -16.85350 -16.76673 -16.47331 -16.26942 -15.63434 -15.36200 -15.31010 -14.48387 -14.30859 -14.27495 -14.13774 -13.70829 -12.84544 -12.70404 -12.61104 -12.47413 -12.38428 -12.28175 -12.13695 -11.94749 -11.69848 -11.57033 -11.28177 -11.24567 -10.97510 -10.75840 -10.66925 -10.54348 -10.50517 -10.09887 -10.09090 -9.64118 -9.23996 -9.21309 -8.39943 -6.04095 -4.08863 0.60048 0.75871 1.80167 2.24509 2.32636 2.62908 2.95124 3.31438 3.34745 3.37800 3.41206 3.62528 3.79464 3.92540 4.10107 4.19796 4.39029 4.43131 4.49878 4.58582 4.71725 4.75379 4.77771 4.94960 5.04401 5.15270 5.21500 5.28126 5.31512 5.31820 5.45002 5.53224 6.07371 6.07444 6.13774 6.31593 6.44984 6.77822 7.35021 7.62606 7.67937 7.94330 8.02855 8.09179 8.31972 8.97947 9.55598 11.06861 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.045041 B = 0.001471 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.499778 B =19036.154188 C =19413.899607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.033 3.967 10 C -0.101 4.101 11 C 0.462 3.538 12 O -0.502 6.502 13 O -0.341 6.341 14 C 0.059 3.941 15 C 0.516 3.484 16 O -0.433 6.433 17 N -0.615 5.615 18 C 0.393 3.607 19 N -0.266 5.266 20 N -0.239 5.239 21 C 0.143 3.857 22 C 0.185 3.815 23 H 0.104 0.896 24 C -0.146 4.146 25 C -0.153 4.153 26 C 0.047 3.953 27 O -0.352 6.352 28 O -0.233 6.233 29 H 0.262 0.738 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.429 0.571 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.163 -36.241 -2.151 36.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.139 4.139 11 C 0.306 3.694 12 O -0.388 6.388 13 O -0.259 6.259 14 C -0.019 4.019 15 C 0.301 3.699 16 O -0.296 6.296 17 N -0.276 5.276 18 C 0.094 3.906 19 N -0.121 5.121 20 N -0.086 5.086 21 C -0.070 4.070 22 C 0.125 3.875 23 H 0.122 0.878 24 C -0.184 4.184 25 C -0.191 4.191 26 C -0.030 4.030 27 O -0.270 6.270 28 O -0.113 6.113 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.268 0.732 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.783 -35.339 -1.934 35.714 hybrid contribution -1.749 0.214 -0.144 1.768 sum 3.034 -35.126 -2.077 35.317 Atomic orbital electron populations 1.69987 1.06102 1.26806 1.49935 1.25009 0.94856 0.99349 0.95030 0.86531 0.79801 0.83135 0.78160 1.20586 1.21189 1.19739 1.21154 0.93172 0.90549 1.51868 0.92188 1.19050 0.93201 0.89217 0.98961 1.21844 1.00787 0.86719 1.04550 1.25029 0.88030 0.85048 0.71278 1.90652 1.15688 1.87305 1.45179 1.86681 1.40601 1.13441 1.85140 1.22288 0.91896 0.81737 1.05990 1.20690 0.90249 0.81923 0.77034 1.90950 1.14485 1.83503 1.40684 1.42513 1.09896 1.00799 1.74414 1.23376 0.88983 0.79100 0.99141 1.75380 1.02934 1.12746 1.21058 1.74410 1.25969 0.94626 1.13574 1.27277 0.78073 0.97312 1.04345 1.20749 0.94704 0.80545 0.91462 0.87837 1.23029 0.98776 1.01469 0.95166 1.23167 0.98071 1.01119 0.96749 1.23705 0.99095 0.87496 0.92660 1.89010 1.51034 1.44559 1.42425 1.84683 1.37353 1.16640 1.72603 0.92838 0.95494 0.95491 0.88497 0.88517 0.87221 0.87206 0.73183 0.88880 0.89565 0.89367 0.89552 0.91289 0.87897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 10 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 11 C 0.46 8.53 7.96 36.01 0.29 8.81 16 12 O -0.50 -10.32 15.73 -18.75 -0.29 -10.61 16 13 O -0.34 -5.43 9.75 -45.88 -0.45 -5.88 16 14 C 0.06 0.65 5.94 36.01 0.21 0.86 16 15 C 0.52 6.12 7.87 -10.99 -0.09 6.03 16 16 O -0.43 -7.33 15.22 -14.10 -0.21 -7.55 16 17 N -0.61 -5.37 5.39 -12.95 -0.07 -5.44 16 18 C 0.39 4.62 9.08 -86.51 -0.79 3.83 16 19 N -0.27 -4.07 10.46 29.94 0.31 -3.76 16 20 N -0.24 -3.33 12.21 32.58 0.40 -2.93 16 21 C 0.14 1.49 7.16 -13.00 -0.09 1.40 16 22 C 0.19 1.23 3.99 -27.31 -0.11 1.12 16 23 H 0.10 0.42 8.14 -51.92 -0.42 0.00 16 24 C -0.15 -0.63 6.63 -25.21 -0.17 -0.80 16 25 C -0.15 -0.55 7.15 -24.73 -0.18 -0.73 16 26 C 0.05 0.20 7.72 38.21 0.29 0.49 16 27 O -0.35 -2.90 11.17 -35.23 -0.39 -3.30 16 28 O -0.23 -2.30 10.90 4.02 0.04 -2.25 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.11 0.95 8.13 -51.93 -0.42 0.53 16 35 H 0.11 0.97 8.13 -51.93 -0.42 0.54 16 36 H 0.43 1.70 8.82 -40.82 -0.36 1.34 16 37 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.09 0.49 7.69 -51.93 -0.40 0.09 16 39 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.16 8.14 -51.92 -0.42 -0.27 16 42 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 373.23 15.07 5.62 5.62 Total: -1.00 -38.71 373.23 -6.01 -44.72 By element: Atomic # 1 Polarization: 0.09 SS G_CDS: -5.37 Total: -5.28 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.31 Total: 6.22 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 1.38 Total: -38.02 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -1.31 Total: -29.58 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -38.71 -6.01 -44.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330069722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.755 kcal (2) G-P(sol) polarization free energy of solvation -38.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds