Wall clock time and date at job start Tue Mar 31 2020 22:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48499 * 109.46995 * 270.00056 * 3 2 1 5 5 H 1.48498 * 109.46969 * 29.99933 * 3 2 1 6 6 H 1.48504 * 109.47110 * 149.99803 * 3 2 1 7 7 C 1.37881 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00195 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99754 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47259 * 180.02562 * 10 9 7 12 12 O 1.20824 * 119.99623 * 359.97438 * 11 10 9 13 13 O 1.34222 * 120.00175 * 180.02562 * 11 10 9 14 14 C 1.45206 * 116.99928 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.46914 * 179.97438 * 14 13 11 16 16 O 1.21272 * 119.99986 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99725 * 179.97438 * 15 14 13 18 18 C 1.38725 * 120.00193 * 179.97438 * 17 15 14 19 19 N 1.30974 * 126.35494 * 0.02854 * 18 17 15 20 20 N 1.28658 * 109.31651 * 179.97438 * 19 18 17 21 21 C 1.30130 * 109.51945 * 0.02562 * 20 19 18 22 22 C 1.50701 * 126.22037 * 180.02562 * 21 20 19 23 23 H 1.09007 * 109.86983 * 163.97228 * 22 21 20 24 24 C 1.54095 * 109.88145 * 284.97799 * 22 21 20 25 25 C 1.54811 * 104.18886 * 121.45634 * 24 22 21 26 26 C 1.54990 * 102.09134 * 20.87794 * 25 24 22 27 27 O 1.43747 * 109.87700 * 42.81062 * 22 21 20 28 28 O 1.34570 * 126.36306 * 179.97438 * 18 17 15 29 29 H 0.97001 * 120.00137 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46906 * 60.00424 * 9 7 2 31 31 H 1.09004 * 109.46817 * 300.00238 * 9 7 2 32 32 H 1.09002 * 109.47528 * 59.99918 * 10 9 7 33 33 H 1.09004 * 109.47270 * 299.99599 * 10 9 7 34 34 H 1.09001 * 109.47182 * 59.99564 * 14 13 11 35 35 H 1.09001 * 109.46851 * 299.99334 * 14 13 11 36 36 H 0.97003 * 120.00046 * 0.02562 * 17 15 14 37 37 H 1.09004 * 110.48700 * 240.12845 * 24 22 21 38 38 H 1.08995 * 110.49176 * 2.77532 * 24 22 21 39 39 H 1.09006 * 110.91033 * 139.08038 * 25 24 22 40 40 H 1.09002 * 110.90030 * 262.64338 * 25 24 22 41 41 H 1.09008 * 110.61764 * 81.48211 * 26 25 24 42 42 H 1.09008 * 110.61957 * 204.47458 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9673 -0.0012 12 8 0.2836 -4.9672 -0.0011 13 8 2.1629 -6.1296 -0.0008 14 6 1.3721 -7.3474 -0.0020 15 6 2.2901 -8.5425 -0.0020 16 8 3.4924 -8.3836 -0.0014 17 7 1.7750 -9.7880 -0.0025 18 6 2.6200 -10.8882 -0.0030 19 7 3.9294 -10.8614 -0.0025 20 7 4.3797 -12.0666 -0.0027 21 6 3.3830 -12.9032 -0.0038 22 6 3.4825 -14.4069 -0.0039 23 1 2.5235 -14.8417 0.2781 24 6 3.8923 -14.9049 -1.4034 25 6 5.2067 -15.6854 -1.1585 26 6 5.1143 -16.0105 0.3541 27 8 4.5033 -14.8292 0.9159 28 8 2.2465 -12.1810 -0.0030 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.8720 -3.6044 0.8894 33 1 2.8719 -3.6044 -0.8906 34 1 0.7442 -7.3720 -0.8926 35 1 0.7424 -7.3726 0.8874 36 1 0.8133 -9.9151 -0.0033 37 1 3.1274 -15.5649 -1.8126 38 1 4.0679 -14.0622 -2.0720 39 1 5.2327 -16.5994 -1.7520 40 1 6.0748 -15.0613 -1.3706 41 1 4.4847 -16.8847 0.5210 42 1 6.1079 -16.1659 0.7747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330069722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:40 Heat of formation + Delta-G solvation = -138.135150 kcal Electronic energy + Delta-G solvation = -27616.017570 eV Core-core repulsion = 23177.284700 eV Total energy + Delta-G solvation = -4438.732870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.49016 -41.91730 -41.03353 -40.46268 -37.70617 -37.49920 -36.64041 -35.63934 -33.44153 -33.18949 -32.66225 -30.73530 -29.20879 -27.83705 -25.60801 -25.15869 -24.03743 -23.30181 -22.44840 -21.98949 -21.56159 -20.18467 -19.22009 -18.94660 -18.48121 -18.35000 -18.05339 -17.95948 -17.30643 -17.16378 -16.76880 -16.50633 -16.46674 -16.04509 -15.37863 -15.08965 -14.74362 -14.64379 -14.28072 -13.98628 -13.93150 -13.71590 -13.26634 -13.18736 -13.05872 -12.82961 -12.81470 -12.51499 -12.49831 -12.34472 -12.16254 -12.01561 -11.91503 -11.76174 -11.72610 -11.63265 -11.44029 -11.27235 -10.95943 -10.55840 -10.14000 -8.19176 -6.31846 -0.25195 -0.12010 0.88882 1.16770 1.31976 1.39862 1.45292 1.46021 1.57382 1.95225 2.44105 2.81377 2.89637 3.05076 3.15085 3.43648 3.59775 3.66397 3.81694 3.88829 3.93421 3.94306 4.02233 4.13842 4.31353 4.45638 4.46000 4.47732 4.65549 4.71748 4.80308 4.88205 4.92047 4.98979 5.15791 5.19464 5.48887 5.58168 5.63704 5.71102 5.82196 6.15106 6.46198 6.71242 6.86184 7.14592 7.38107 8.93068 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.045041 B = 0.001471 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.499778 B =19036.154188 C =19413.899607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.074 0.926 9 C 0.039 3.961 10 C -0.097 4.097 11 C 0.477 3.523 12 O -0.528 6.528 13 O -0.348 6.348 14 C 0.055 3.945 15 C 0.527 3.473 16 O -0.489 6.489 17 N -0.590 5.590 18 C 0.392 3.608 19 N -0.316 5.316 20 N -0.284 5.284 21 C 0.160 3.840 22 C 0.179 3.821 23 H 0.137 0.863 24 C -0.142 4.142 25 C -0.151 4.151 26 C 0.041 3.959 27 O -0.386 6.386 28 O -0.219 6.219 29 H 0.264 0.736 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.453 0.547 37 H 0.127 0.873 38 H 0.067 0.933 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -38.122 -2.466 38.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.092 0.908 9 C 0.001 3.999 10 C -0.134 4.134 11 C 0.321 3.679 12 O -0.417 6.417 13 O -0.264 6.264 14 C -0.021 4.021 15 C 0.314 3.686 16 O -0.356 6.356 17 N -0.253 5.253 18 C 0.091 3.909 19 N -0.170 5.170 20 N -0.130 5.130 21 C -0.054 4.054 22 C 0.120 3.880 23 H 0.155 0.845 24 C -0.180 4.180 25 C -0.188 4.188 26 C -0.034 4.034 27 O -0.305 6.305 28 O -0.098 6.098 29 H 0.073 0.927 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.297 0.703 37 H 0.146 0.854 38 H 0.086 0.914 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.114 0.886 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.596 -37.276 -2.251 37.625 hybrid contribution -1.716 0.596 -0.045 1.817 sum 2.879 -36.680 -2.296 36.865 Atomic orbital electron populations 1.70133 1.08001 1.27879 1.51212 1.26005 0.95708 1.03536 0.94535 0.85375 0.78660 0.78074 0.78483 1.19787 1.21052 1.18361 1.21648 0.94054 0.91509 1.51187 0.90827 1.18817 0.93612 0.91473 0.95955 1.21552 0.99571 0.86032 1.06257 1.24396 0.87185 0.85491 0.70779 1.90646 1.16605 1.87840 1.46564 1.86585 1.41128 1.14189 1.84532 1.22704 0.91357 0.79088 1.08959 1.20808 0.89462 0.82727 0.75619 1.90946 1.16766 1.84387 1.43541 1.42201 1.10773 0.99267 1.73088 1.23405 0.88693 0.80125 0.98634 1.75265 1.04976 1.13920 1.22877 1.74335 1.27571 0.94861 1.16187 1.28286 0.77418 0.98634 1.01062 1.21317 0.96020 0.77935 0.92756 0.84536 1.23089 1.00103 1.01379 0.93441 1.23174 0.96950 1.01827 0.96876 1.23953 0.99633 0.87069 0.92717 1.88972 1.51818 1.46182 1.43559 1.84712 1.36916 1.15737 1.72476 0.92742 0.98547 0.98581 0.86842 0.86793 0.84177 0.84280 0.70296 0.85431 0.91435 0.86603 0.91556 0.88615 0.87779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 43.63 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 7 C -0.55 -30.24 9.11 25.60 0.23 -30.01 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.03 4.26 29.85 0.13 2.16 16 10 C -0.10 -3.81 5.75 29.85 0.17 -3.64 16 11 C 0.48 17.23 7.96 71.24 0.57 17.80 16 12 O -0.53 -21.50 15.73 21.97 0.35 -21.15 16 13 O -0.35 -10.61 9.75 -44.99 -0.44 -11.04 16 14 C 0.06 1.10 5.94 71.24 0.42 1.53 16 15 C 0.53 11.95 7.87 87.66 0.69 12.64 16 16 O -0.49 -16.75 15.22 15.79 0.24 -16.51 16 17 N -0.59 -9.42 5.39 -423.22 -2.28 -11.70 16 18 C 0.39 9.04 9.08 178.91 1.62 10.66 16 19 N -0.32 -9.99 10.46 -173.31 -1.81 -11.80 16 20 N -0.28 -8.20 12.21 -165.32 -2.02 -10.22 16 21 C 0.16 3.26 7.16 88.36 0.63 3.89 16 22 C 0.18 2.07 3.99 30.22 0.12 2.19 16 23 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 24 C -0.14 -0.94 6.63 31.58 0.21 -0.73 16 25 C -0.15 -0.84 7.15 31.89 0.23 -0.61 16 26 C 0.04 0.28 7.72 72.66 0.56 0.84 16 27 O -0.39 -6.01 11.17 -148.98 -1.66 -7.68 16 28 O -0.22 -4.06 10.90 -8.51 -0.09 -4.15 16 29 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.00 -0.23 8.10 -2.39 -0.02 -0.25 16 31 H 0.00 -0.25 8.10 -2.38 -0.02 -0.27 16 32 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 33 H 0.11 4.09 8.14 -2.38 -0.02 4.07 16 34 H 0.14 2.02 8.13 -2.39 -0.02 2.00 16 35 H 0.14 2.04 8.13 -2.39 -0.02 2.02 16 36 H 0.45 2.39 8.82 -92.71 -0.82 1.57 16 37 H 0.13 -0.02 8.14 -2.38 -0.02 -0.04 16 38 H 0.07 0.72 7.69 -2.39 -0.02 0.70 16 39 H 0.12 0.00 8.14 -2.38 -0.02 -0.02 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 Total: -1.00 -88.36 373.23 0.90 -87.47 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 0.26 Total: 0.50 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.05 Total: 17.20 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -5.83 Total: -90.29 kcal Atomic # 8 Polarization: -58.93 SS G_CDS: -1.61 Total: -60.54 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -88.36 0.90 -87.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330069722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.668 kcal (2) G-P(sol) polarization free energy of solvation -88.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds