Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00000 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00154 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00262 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47357 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99612 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00377 * 179.97438 * 15 14 13 18 18 C 1.38726 * 120.00156 * 180.02562 * 17 15 14 19 19 N 1.30972 * 126.35998 * 359.68599 * 18 17 15 20 20 N 1.28649 * 109.32142 * 179.89210 * 19 18 17 21 21 C 1.30138 * 109.51711 * 0.37964 * 20 19 18 22 22 C 1.50703 * 126.22070 * 179.80392 * 21 20 19 23 23 H 1.09005 * 110.32940 * 195.65894 * 22 21 20 24 24 C 1.54476 * 110.37126 * 73.41273 * 22 21 20 25 25 C 1.54505 * 104.06311 * 217.18716 * 24 22 21 26 26 C 1.54478 * 104.06287 * 359.97438 * 25 24 22 27 27 O 1.44416 * 110.37321 * 317.91336 * 22 21 20 28 28 O 1.34570 * 126.35868 * 180.02562 * 18 17 15 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.09003 * 109.46752 * 299.99695 * 14 13 11 35 35 H 1.09001 * 109.46943 * 59.99499 * 14 13 11 36 36 H 0.96996 * 119.99466 * 359.97438 * 17 15 14 37 37 H 1.09000 * 110.51377 * 335.83508 * 24 22 21 38 38 H 1.09004 * 110.51255 * 98.54483 * 24 22 21 39 39 H 1.09006 * 110.51281 * 118.64569 * 25 24 22 40 40 H 1.08998 * 110.51219 * 241.35483 * 25 24 22 41 41 H 1.09003 * 110.37103 * 142.80808 * 26 25 24 42 42 H 1.08999 * 110.37398 * 265.03651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 0.0001 12 8 0.2837 -4.9672 0.0000 13 8 2.1631 -6.1296 0.0007 14 6 1.3724 -7.3474 0.0007 15 6 2.2903 -8.5425 0.0009 16 8 3.4927 -8.3835 0.0004 17 7 1.7753 -9.7880 0.0014 18 6 2.6204 -10.8881 0.0020 19 7 3.9298 -10.8613 -0.0036 20 7 4.3802 -12.0664 0.0014 21 6 3.3834 -12.9031 0.0022 22 6 3.4830 -14.4068 0.0034 23 1 2.5259 -14.8500 -0.2720 24 6 3.9313 -14.9150 1.3916 25 6 4.8620 -16.1063 1.0727 26 6 4.8654 -16.1774 -0.4705 27 8 4.5186 -14.8428 -0.9039 28 8 2.2469 -12.1809 0.0021 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 0.7432 -7.3720 0.8905 35 1 0.7439 -7.3725 -0.8895 36 1 0.8137 -9.9150 0.0021 37 1 4.4765 -14.1367 1.9255 38 1 3.0711 -15.2473 1.9728 39 1 5.8674 -15.9170 1.4489 40 1 4.4620 -17.0276 1.4962 41 1 5.8557 -16.4497 -0.8356 42 1 4.1227 -16.8952 -0.8189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330069724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = -106.036751 kcal Electronic energy + Delta-G solvation = -27564.150749 eV Core-core repulsion = 23126.809770 eV Total energy + Delta-G solvation = -4437.340979 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.62843 -40.76085 -40.04856 -39.74992 -36.62391 -36.36369 -35.65548 -33.64033 -32.91336 -32.10744 -31.28005 -29.79975 -28.35323 -25.99371 -24.98495 -24.24865 -22.74181 -22.32036 -21.90228 -21.11062 -20.01722 -19.31630 -18.08468 -17.83884 -17.73646 -17.18706 -16.84351 -16.77167 -16.44021 -16.20729 -15.77460 -15.41266 -15.31935 -14.48082 -14.44698 -14.15996 -14.08216 -13.71004 -12.88601 -12.71549 -12.61471 -12.46980 -12.38923 -12.28599 -12.14749 -12.03620 -11.73498 -11.48550 -11.27688 -11.22499 -10.99334 -10.76058 -10.65167 -10.57547 -10.52017 -10.09995 -10.09728 -9.64557 -9.25942 -9.19862 -8.40463 -6.04404 -4.09068 0.57714 0.73764 1.78829 2.22003 2.30981 2.62676 2.93950 3.30312 3.37954 3.39085 3.42146 3.63288 3.78782 3.92945 4.11032 4.18943 4.36640 4.43003 4.48548 4.55404 4.68024 4.75044 4.77434 4.90195 5.04402 5.15563 5.19008 5.31082 5.31454 5.31629 5.39394 5.51913 6.01222 6.07298 6.13611 6.30757 6.44650 6.77658 7.34270 7.62708 7.67750 7.94230 8.01177 8.08965 8.31830 8.98016 9.55494 11.06634 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.047432 B = 0.001455 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.183120 B =19233.194890 C =19583.478010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.060 0.940 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.462 3.538 12 O -0.502 6.502 13 O -0.341 6.341 14 C 0.059 3.941 15 C 0.516 3.484 16 O -0.433 6.433 17 N -0.615 5.615 18 C 0.395 3.605 19 N -0.265 5.265 20 N -0.236 5.236 21 C 0.147 3.853 22 C 0.182 3.818 23 H 0.104 0.896 24 C -0.145 4.145 25 C -0.152 4.152 26 C 0.044 3.956 27 O -0.350 6.350 28 O -0.233 6.233 29 H 0.261 0.739 30 H 0.027 0.973 31 H 0.027 0.973 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.430 0.570 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.102 0.898 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -36.420 1.919 36.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.139 4.139 11 C 0.306 3.694 12 O -0.388 6.388 13 O -0.259 6.259 14 C -0.019 4.019 15 C 0.301 3.699 16 O -0.296 6.296 17 N -0.276 5.276 18 C 0.096 3.904 19 N -0.121 5.121 20 N -0.083 5.083 21 C -0.066 4.066 22 C 0.123 3.877 23 H 0.122 0.878 24 C -0.184 4.184 25 C -0.190 4.190 26 C -0.032 4.032 27 O -0.268 6.268 28 O -0.112 6.112 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.268 0.732 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.325 -35.503 1.726 35.807 hybrid contribution -1.777 0.168 0.108 1.788 sum 2.548 -35.335 1.833 35.474 Atomic orbital electron populations 1.69998 1.06100 1.26698 1.50047 1.25011 0.94857 0.99364 0.95043 0.86479 0.80100 0.83468 0.77610 1.19581 1.20960 1.20970 1.21191 0.93211 0.90533 1.51711 0.92132 1.19056 0.93207 0.89236 0.98969 1.21844 1.00787 0.86713 1.04557 1.25032 0.88029 0.85044 0.71273 1.90653 1.15686 1.87304 1.45179 1.86681 1.40601 1.13437 1.85145 1.22284 0.91889 0.81733 1.05996 1.20698 0.90258 0.81916 0.77030 1.90954 1.14478 1.83496 1.40654 1.42519 1.09901 1.00785 1.74400 1.23372 0.88985 0.79064 0.99023 1.75386 1.02924 1.12707 1.21073 1.74425 1.25921 0.94633 1.13352 1.26918 0.78099 0.96927 1.04641 1.20919 0.94508 0.80800 0.91519 0.87848 1.23028 1.00878 0.99056 0.95414 1.22947 1.01248 0.98432 0.96395 1.23557 1.02095 0.83855 0.93718 1.89302 1.54968 1.31057 1.51499 1.84677 1.37265 1.16671 1.72620 0.92894 0.95479 0.95496 0.88494 0.88509 0.87206 0.87208 0.73166 0.89392 0.89074 0.89752 0.89729 0.87977 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.83 4.26 -27.88 -0.12 0.71 16 10 C -0.10 -2.02 5.75 -27.88 -0.16 -2.18 16 11 C 0.46 8.51 7.96 36.01 0.29 8.80 16 12 O -0.50 -10.30 15.73 -18.75 -0.29 -10.59 16 13 O -0.34 -5.41 9.75 -45.91 -0.45 -5.86 16 14 C 0.06 0.64 5.94 36.00 0.21 0.86 16 15 C 0.52 6.08 7.87 -10.99 -0.09 6.00 16 16 O -0.43 -7.30 15.22 -14.11 -0.21 -7.52 16 17 N -0.61 -5.31 5.39 -12.95 -0.07 -5.38 16 18 C 0.39 4.60 9.08 -86.51 -0.79 3.82 16 19 N -0.27 -4.06 10.46 29.94 0.31 -3.75 16 20 N -0.24 -3.31 12.21 32.58 0.40 -2.91 16 21 C 0.15 1.53 7.31 -13.00 -0.10 1.44 16 22 C 0.18 1.22 3.85 -27.11 -0.10 1.11 16 23 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 24 C -0.15 -0.66 6.62 -25.17 -0.17 -0.83 16 25 C -0.15 -0.48 7.09 -25.17 -0.18 -0.66 16 26 C 0.04 0.18 7.63 37.93 0.29 0.47 16 27 O -0.35 -2.91 11.34 -35.23 -0.40 -3.31 16 28 O -0.23 -2.27 10.90 4.02 0.04 -2.22 16 29 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 30 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 33 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 34 H 0.11 0.95 8.13 -51.93 -0.42 0.52 16 35 H 0.11 0.96 8.13 -51.93 -0.42 0.54 16 36 H 0.43 1.65 8.82 -40.82 -0.36 1.29 16 37 H 0.09 0.55 7.86 -51.93 -0.41 0.14 16 38 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 373.42 15.07 5.63 5.63 Total: -1.00 -38.71 373.42 -6.02 -44.74 By element: Atomic # 1 Polarization: -0.10 SS G_CDS: -5.38 Total: -5.48 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.32 Total: 6.23 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 1.38 Total: -37.92 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.31 Total: -29.51 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.71 -6.02 -44.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330069724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.299 kcal (2) G-P(sol) polarization free energy of solvation -38.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds