Wall clock time and date at job start Tue Mar 31 2020 22:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 7 12 12 O 1.20828 * 120.00000 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00154 * 180.02562 * 11 10 9 14 14 C 1.45196 * 117.00262 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47357 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99612 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00377 * 179.97438 * 15 14 13 18 18 C 1.38726 * 120.00156 * 180.02562 * 17 15 14 19 19 N 1.30972 * 126.35998 * 359.68599 * 18 17 15 20 20 N 1.28649 * 109.32142 * 179.89210 * 19 18 17 21 21 C 1.30138 * 109.51711 * 0.37964 * 20 19 18 22 22 C 1.50703 * 126.22070 * 179.80392 * 21 20 19 23 23 H 1.09005 * 110.32940 * 195.65894 * 22 21 20 24 24 C 1.54476 * 110.37126 * 73.41273 * 22 21 20 25 25 C 1.54505 * 104.06311 * 217.18716 * 24 22 21 26 26 C 1.54478 * 104.06287 * 359.97438 * 25 24 22 27 27 O 1.44416 * 110.37321 * 317.91336 * 22 21 20 28 28 O 1.34570 * 126.35868 * 180.02562 * 18 17 15 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.09003 * 109.46752 * 299.99695 * 14 13 11 35 35 H 1.09001 * 109.46943 * 59.99499 * 14 13 11 36 36 H 0.96996 * 119.99466 * 359.97438 * 17 15 14 37 37 H 1.09000 * 110.51377 * 335.83508 * 24 22 21 38 38 H 1.09004 * 110.51255 * 98.54483 * 24 22 21 39 39 H 1.09006 * 110.51281 * 118.64569 * 25 24 22 40 40 H 1.08998 * 110.51219 * 241.35483 * 25 24 22 41 41 H 1.09003 * 110.37103 * 142.80808 * 26 25 24 42 42 H 1.08999 * 110.37398 * 265.03651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 0.0001 12 8 0.2837 -4.9672 0.0000 13 8 2.1631 -6.1296 0.0007 14 6 1.3724 -7.3474 0.0007 15 6 2.2903 -8.5425 0.0009 16 8 3.4927 -8.3835 0.0004 17 7 1.7753 -9.7880 0.0014 18 6 2.6204 -10.8881 0.0020 19 7 3.9298 -10.8613 -0.0036 20 7 4.3802 -12.0664 0.0014 21 6 3.3834 -12.9031 0.0022 22 6 3.4830 -14.4068 0.0034 23 1 2.5259 -14.8500 -0.2720 24 6 3.9313 -14.9150 1.3916 25 6 4.8620 -16.1063 1.0727 26 6 4.8654 -16.1774 -0.4705 27 8 4.5186 -14.8428 -0.9039 28 8 2.2469 -12.1809 0.0021 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 0.7432 -7.3720 0.8905 35 1 0.7439 -7.3725 -0.8895 36 1 0.8137 -9.9150 0.0021 37 1 4.4765 -14.1367 1.9255 38 1 3.0711 -15.2473 1.9728 39 1 5.8674 -15.9170 1.4489 40 1 4.4620 -17.0276 1.4962 41 1 5.8557 -16.4497 -0.8356 42 1 4.1227 -16.8952 -0.8189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330069724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:43 Heat of formation + Delta-G solvation = -137.723704 kcal Electronic energy + Delta-G solvation = -27565.524798 eV Core-core repulsion = 23126.809770 eV Total energy + Delta-G solvation = -4438.715028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.135 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.50665 -41.91569 -41.03065 -40.43597 -37.70483 -37.51959 -36.64488 -35.63942 -33.40744 -33.18703 -32.70184 -30.72724 -29.17672 -27.83675 -25.69447 -25.20083 -24.04004 -23.32061 -22.34002 -21.99600 -21.56048 -20.19262 -19.21969 -18.91974 -18.47949 -18.36715 -18.05817 -17.96487 -17.30122 -17.09586 -16.71480 -16.51281 -16.46351 -16.21324 -15.38249 -15.09141 -14.79479 -14.55243 -14.28788 -13.98232 -13.92957 -13.73791 -13.27910 -13.18340 -13.06532 -12.85678 -12.79873 -12.53211 -12.49016 -12.38925 -12.17695 -12.01976 -11.91606 -11.75837 -11.65593 -11.61234 -11.43814 -11.25368 -10.97646 -10.56692 -10.15877 -8.19378 -6.31884 -0.27153 -0.13630 0.87717 1.16934 1.30618 1.38989 1.44541 1.45262 1.58523 1.93548 2.43984 2.80654 2.93505 3.04301 3.15015 3.45050 3.59815 3.65059 3.86192 3.89028 3.89903 3.94578 4.02473 4.16264 4.28090 4.40692 4.45847 4.46213 4.64517 4.67751 4.83662 4.88386 4.93779 5.00066 5.14549 5.19622 5.49173 5.58265 5.62695 5.67525 5.82382 6.15180 6.46035 6.71450 6.86415 7.13231 7.38131 8.93137 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.047432 B = 0.001455 C = 0.001429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.183120 B =19233.194890 C =19583.478010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.038 3.962 10 C -0.097 4.097 11 C 0.477 3.523 12 O -0.528 6.528 13 O -0.348 6.348 14 C 0.055 3.945 15 C 0.527 3.473 16 O -0.489 6.489 17 N -0.589 5.589 18 C 0.395 3.605 19 N -0.315 5.315 20 N -0.282 5.282 21 C 0.165 3.835 22 C 0.177 3.823 23 H 0.139 0.861 24 C -0.143 4.143 25 C -0.147 4.147 26 C 0.038 3.962 27 O -0.387 6.387 28 O -0.218 6.218 29 H 0.264 0.736 30 H -0.004 1.004 31 H -0.004 1.004 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.453 0.547 37 H 0.063 0.937 38 H 0.120 0.880 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -38.273 2.196 38.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.794 3.206 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.092 0.908 9 C 0.001 3.999 10 C -0.134 4.134 11 C 0.322 3.678 12 O -0.417 6.417 13 O -0.264 6.264 14 C -0.021 4.021 15 C 0.314 3.686 16 O -0.356 6.356 17 N -0.253 5.253 18 C 0.094 3.906 19 N -0.170 5.170 20 N -0.128 5.128 21 C -0.049 4.049 22 C 0.117 3.883 23 H 0.156 0.844 24 C -0.181 4.181 25 C -0.184 4.184 26 C -0.038 4.038 27 O -0.306 6.306 28 O -0.097 6.097 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.297 0.703 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.051 -37.413 2.005 37.685 hybrid contribution -1.724 0.542 0.018 1.807 sum 2.327 -36.871 2.023 36.999 Atomic orbital electron populations 1.70140 1.07996 1.27815 1.51315 1.26003 0.95708 1.03534 0.94563 0.85328 0.79236 0.78440 0.77588 1.18094 1.20598 1.20587 1.21675 0.94055 0.91496 1.51018 0.90827 1.18823 0.93620 0.91486 0.95970 1.21551 0.99570 0.86035 1.06261 1.24395 0.87182 0.85486 0.70776 1.90647 1.16601 1.87839 1.46564 1.86585 1.41129 1.14189 1.84536 1.22701 0.91350 0.79078 1.08974 1.20816 0.89467 0.82723 0.75609 1.90951 1.16767 1.84381 1.43514 1.42205 1.10779 0.99239 1.73066 1.23395 0.88684 0.80091 0.98475 1.75271 1.04991 1.13849 1.22916 1.74350 1.27569 0.94905 1.15979 1.27880 0.77461 0.98226 1.01374 1.21468 0.95887 0.78239 0.92667 0.84395 1.23072 1.02003 0.98816 0.94232 1.22958 1.00715 0.98961 0.95801 1.23813 1.03065 0.82516 0.94363 1.89265 1.55709 1.33202 1.52418 1.84706 1.36766 1.15754 1.72481 0.92746 0.98558 0.98541 0.86831 0.86802 0.84156 0.84270 0.70260 0.91778 0.86209 0.90570 0.86943 0.87754 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.54 -30.12 9.11 25.60 0.23 -29.88 16 8 H 0.07 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.04 2.01 4.26 29.85 0.13 2.13 16 10 C -0.10 -3.81 5.75 29.85 0.17 -3.64 16 11 C 0.48 17.18 7.96 71.24 0.57 17.75 16 12 O -0.53 -21.44 15.73 21.96 0.35 -21.09 16 13 O -0.35 -10.56 9.75 -45.07 -0.44 -11.00 16 14 C 0.06 1.09 5.94 71.23 0.42 1.52 16 15 C 0.53 11.85 7.87 87.66 0.69 12.54 16 16 O -0.49 -16.67 15.22 15.76 0.24 -16.43 16 17 N -0.59 -9.26 5.39 -423.21 -2.28 -11.55 16 18 C 0.39 9.00 9.08 178.91 1.62 10.62 16 19 N -0.32 -9.96 10.46 -173.31 -1.81 -11.77 16 20 N -0.28 -8.19 12.21 -165.31 -2.02 -10.21 16 21 C 0.16 3.35 7.31 88.36 0.65 4.00 16 22 C 0.18 2.07 3.85 30.35 0.12 2.18 16 23 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 24 C -0.14 -1.04 6.62 31.61 0.21 -0.83 16 25 C -0.15 -0.61 7.09 31.61 0.22 -0.39 16 26 C 0.04 0.24 7.63 72.48 0.55 0.79 16 27 O -0.39 -6.12 11.34 -148.98 -1.69 -7.81 16 28 O -0.22 -3.98 10.90 -8.53 -0.09 -4.07 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.00 -0.23 8.10 -2.39 -0.02 -0.25 16 31 H 0.00 -0.22 8.10 -2.39 -0.02 -0.24 16 32 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 33 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 34 H 0.14 2.00 8.13 -2.39 -0.02 1.98 16 35 H 0.14 2.01 8.13 -2.39 -0.02 2.00 16 36 H 0.45 2.26 8.82 -92.71 -0.82 1.44 16 37 H 0.06 0.79 7.86 -2.39 -0.02 0.77 16 38 H 0.12 0.17 8.14 -2.38 -0.02 0.16 16 39 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -88.37 373.42 0.87 -87.51 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: 0.26 Total: 0.06 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 6.05 Total: 17.26 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -5.83 Total: -90.08 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -1.64 Total: -60.41 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -88.37 0.87 -87.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330069724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.218 kcal (2) G-P(sol) polarization free energy of solvation -88.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds