Wall clock time and date at job start Tue Mar 31 2020 22:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86796 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47321 * 300.00070 * 3 2 1 6 6 H 1.48504 * 109.47376 * 60.00254 * 3 2 1 7 7 C 1.40030 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99560 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.40625 * 119.78870 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.13673 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.66979 * 359.97438 * 11 10 9 13 13 C 1.39670 * 119.49443 * 359.97438 * 12 11 10 14 14 N 1.39110 * 119.57617 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00322 * 174.66540 * 14 13 12 16 16 O 1.21357 * 119.99582 * 5.15016 * 15 14 13 17 17 C 1.49365 * 120.00771 * 185.15314 * 15 14 13 18 18 O 1.21357 * 119.99647 * 359.97438 * 17 15 14 19 19 N 1.34774 * 120.00789 * 179.97438 * 17 15 14 20 20 C 1.46491 * 120.00258 * 179.97438 * 19 17 15 21 21 C 1.53005 * 109.47016 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47058 * 180.02562 * 21 20 19 23 23 H 1.08997 * 115.55050 * 330.67319 * 22 21 20 24 24 C 1.53002 * 117.49704 * 185.00516 * 22 21 20 25 25 C 1.52999 * 117.49901 * 116.38412 * 22 21 20 26 26 F 1.39902 * 117.49875 * 214.98266 * 25 22 21 27 27 F 1.39903 * 117.49884 * 359.97438 * 25 22 21 28 28 N 1.31962 * 120.84307 * 0.02585 * 13 12 11 29 29 H 0.97005 * 120.00014 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.42889 * 359.95411 * 10 9 7 31 31 H 1.07996 * 120.66228 * 179.97438 * 11 10 9 32 32 H 1.08001 * 120.25247 * 180.27233 * 12 11 10 33 33 H 0.97006 * 120.00532 * 354.66823 * 14 13 12 34 34 H 0.97006 * 119.99000 * 0.02562 * 19 17 15 35 35 H 1.08994 * 109.47488 * 300.00255 * 20 19 17 36 36 H 1.09000 * 109.47035 * 60.00795 * 20 19 17 37 37 H 1.08999 * 109.47421 * 300.00783 * 21 20 19 38 38 H 1.09005 * 109.46851 * 60.00122 * 21 20 19 39 39 H 1.09003 * 117.49996 * 359.97438 * 24 22 21 40 40 H 1.09002 * 117.50152 * 145.02320 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0016 10 6 2.0086 -3.6519 -0.0016 11 6 1.3035 -4.8418 -0.0022 12 6 -0.0826 -4.7939 -0.0022 13 6 -0.7278 -3.5551 -0.0011 14 7 -2.1180 -3.5051 -0.0016 15 6 -2.7497 -2.3196 0.1080 16 8 -2.1091 -1.2889 0.1130 17 6 -4.2382 -2.2742 0.2233 18 8 -4.8789 -3.3049 0.2179 19 7 -4.8699 -1.0888 0.3334 20 6 -6.3298 -1.0444 0.4460 21 6 -6.7888 0.4110 0.5566 22 6 -8.3135 0.4573 0.6748 23 1 -8.8477 -0.3593 0.1892 24 6 -8.9803 1.8344 0.6782 25 6 -8.9050 1.0177 1.9698 26 9 -10.0903 0.4426 2.4405 27 9 -8.0102 1.4481 2.9554 28 7 -0.0355 -2.4317 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.0886 -3.6560 -0.0015 31 1 1.8219 -5.7892 -0.0026 32 1 -0.6586 -5.7074 0.0019 33 1 -2.6329 -4.3234 -0.0808 34 1 -4.3578 -0.2650 0.3373 35 1 -6.7765 -1.4997 -0.4379 36 1 -6.6426 -1.5928 1.3345 37 1 -6.3421 0.8667 1.4402 38 1 -6.4760 0.9591 -0.3322 39 1 -8.3326 2.7074 0.5966 40 1 -9.9533 1.9237 0.1952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331302678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:33 Heat of formation + Delta-G solvation = -80.027723 kcal Electronic energy + Delta-G solvation = -28215.045290 eV Core-core repulsion = 23667.744632 eV Total energy + Delta-G solvation = -4547.300658 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.01166 -47.69135 -40.23222 -38.71916 -37.63211 -37.16860 -35.16746 -34.13949 -33.06890 -30.59219 -30.38421 -29.21693 -25.91865 -25.16221 -23.19426 -22.99971 -21.63214 -21.45726 -20.98301 -19.56472 -18.42254 -18.04103 -17.22236 -17.16762 -16.53920 -16.34203 -15.84763 -15.71574 -14.99981 -14.72533 -14.60782 -14.49535 -14.36025 -14.24518 -13.91104 -13.78070 -13.63240 -13.42127 -13.34648 -12.89507 -12.50977 -12.27877 -12.04922 -12.01628 -11.79412 -11.23248 -11.16689 -11.05040 -10.99584 -10.68929 -10.54039 -10.27991 -9.97221 -9.82478 -9.21194 -9.11606 -9.02867 -8.04890 -7.35092 -7.07501 -6.23819 -4.46615 1.88511 2.61244 2.62087 2.72488 2.79945 3.06987 3.13006 3.16579 3.21655 3.69271 3.86087 3.94157 4.00383 4.10161 4.21218 4.51888 4.78092 4.83009 4.85132 4.97719 4.99341 5.09705 5.28500 5.39557 5.61838 5.72655 5.95443 6.05354 6.25744 6.42157 6.56237 6.73680 6.78292 7.13760 7.22780 7.47044 7.51228 7.75027 7.87220 8.02130 8.14554 8.35526 8.61032 8.91587 9.00011 10.12911 10.39619 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.002618 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.227861 B =10690.829607 C =12488.431995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.663 5.663 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.271 3.729 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.349 4.349 13 C 0.368 3.632 14 N -0.638 5.638 15 C 0.467 3.533 16 O -0.387 6.387 17 C 0.510 3.490 18 O -0.533 6.533 19 N -0.707 5.707 20 C 0.122 3.878 21 C -0.112 4.112 22 C -0.142 4.142 23 H 0.136 0.864 24 C -0.171 4.171 25 C 0.192 3.808 26 F -0.162 7.162 27 F -0.157 7.157 28 N -0.475 5.475 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.411 0.589 34 H 0.415 0.585 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.974 4.478 -0.177 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.282 5.282 2 C -0.169 4.169 3 Si 0.723 3.277 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.145 3.855 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.130 3.870 14 N -0.287 5.287 15 C 0.243 3.757 16 O -0.249 6.249 17 C 0.291 3.709 18 O -0.410 6.410 19 N -0.361 5.361 20 C -0.002 4.002 21 C -0.149 4.149 22 C -0.161 4.161 23 H 0.153 0.847 24 C -0.209 4.209 25 C 0.155 3.845 26 F -0.142 7.142 27 F -0.138 7.138 28 N -0.194 5.194 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.143 0.857 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.627 5.531 -0.100 18.475 hybrid contribution 0.558 -0.252 0.263 0.666 sum -17.070 5.278 0.163 17.868 Atomic orbital electron populations 1.70321 1.05942 1.27230 1.24675 1.26170 0.95135 1.00699 0.94946 0.86420 0.80961 0.81981 0.78361 1.18580 1.20044 1.20027 1.19626 0.94164 0.89284 1.42314 0.89795 1.18381 0.86986 0.92084 0.88008 1.21656 0.98684 0.93466 1.18493 1.20584 0.93072 0.96679 0.95688 1.20517 0.94837 0.94951 1.27130 1.18542 0.82638 0.91247 0.94587 1.42987 1.05290 1.09147 1.71262 1.20095 0.87138 0.86109 0.82367 1.91212 1.64575 1.30719 1.38434 1.20827 0.89745 0.83724 0.76605 1.90701 1.68257 1.33184 1.48835 1.45683 1.07467 1.09487 1.73505 1.21340 0.79963 0.96066 1.02814 1.21432 0.91498 0.97272 1.04707 1.23597 0.97402 0.99064 0.96068 0.84661 1.24403 1.04712 0.96543 0.95197 1.20120 0.79970 1.03166 0.81246 1.93034 1.45813 1.85092 1.90295 1.93032 1.66454 1.89891 1.64390 1.68643 1.07278 1.23147 1.20313 0.91756 0.88364 0.88354 0.88709 0.75301 0.74832 0.90784 0.90954 0.89524 0.89000 0.85746 0.85789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.36 8.99 55.55 0.50 -16.86 16 2 C 0.06 1.49 5.50 -17.34 -0.10 1.40 16 3 Si 0.90 18.49 29.56 -169.99 -5.02 13.46 16 4 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.42 -11.28 9.14 -37.73 -0.34 -11.63 16 8 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 9 C 0.27 7.42 6.55 -85.00 -0.56 6.86 16 10 C -0.30 -7.38 9.83 -38.66 -0.38 -7.76 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.35 -7.81 9.95 -38.88 -0.39 -8.19 16 13 C 0.37 8.93 7.42 -155.09 -1.15 7.78 16 14 N -0.64 -13.14 5.37 -11.84 -0.06 -13.20 16 15 C 0.47 9.45 7.84 -11.63 -0.09 9.35 16 16 O -0.39 -9.00 12.24 5.49 0.07 -8.93 16 17 C 0.51 8.48 7.89 -11.63 -0.09 8.39 16 18 O -0.53 -9.50 16.48 5.49 0.09 -9.41 16 19 N -0.71 -9.14 5.55 -60.77 -0.34 -9.48 16 20 C 0.12 1.19 5.63 -4.04 -0.02 1.17 16 21 C -0.11 -0.79 5.59 -26.73 -0.15 -0.94 16 22 C -0.14 -0.87 5.72 -90.62 -0.52 -1.39 16 23 H 0.14 0.67 8.07 -51.93 -0.42 0.26 16 24 C -0.17 -0.85 10.22 -26.73 -0.27 -1.13 16 25 C 0.19 1.57 5.20 -26.73 -0.14 1.43 16 26 F -0.16 -1.57 17.60 2.25 0.04 -1.53 16 27 F -0.16 -1.62 16.48 2.25 0.04 -1.58 16 28 N -0.47 -12.98 5.73 -10.28 -0.06 -13.04 16 29 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 30 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 31 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 32 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.41 7.25 8.18 -40.82 -0.33 6.91 16 34 H 0.42 5.12 7.94 -40.82 -0.32 4.79 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.09 0.68 7.06 -51.93 -0.37 0.31 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 358.23 15.07 5.40 5.40 Total: -1.00 -32.41 358.23 -8.32 -40.73 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.37 Total: 10.31 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -4.60 Total: 4.13 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.04 Total: -52.59 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.16 Total: -18.34 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.41 -8.32 -40.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331302678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.296 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds