Wall clock time and date at job start Tue Mar 31 2020 22:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86796 * 119.99827 * 2 1 4 4 H 1.48498 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47321 * 300.00070 * 3 2 1 6 6 H 1.48504 * 109.47376 * 60.00254 * 3 2 1 7 7 C 1.40030 * 119.99929 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99560 * 179.97438 * 7 2 1 9 9 C 1.41335 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.40625 * 119.78870 * 180.02562 * 9 7 2 11 11 C 1.38305 * 119.13673 * 179.97438 * 10 9 7 12 12 C 1.38693 * 118.66979 * 359.97438 * 11 10 9 13 13 C 1.39670 * 119.49443 * 359.97438 * 12 11 10 14 14 N 1.39110 * 119.57617 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00322 * 174.66540 * 14 13 12 16 16 O 1.21357 * 119.99582 * 5.15016 * 15 14 13 17 17 C 1.49365 * 120.00771 * 185.15314 * 15 14 13 18 18 O 1.21357 * 119.99647 * 359.97438 * 17 15 14 19 19 N 1.34774 * 120.00789 * 179.97438 * 17 15 14 20 20 C 1.46491 * 120.00258 * 179.97438 * 19 17 15 21 21 C 1.53005 * 109.47016 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47058 * 180.02562 * 21 20 19 23 23 H 1.08997 * 115.55050 * 330.67319 * 22 21 20 24 24 C 1.53002 * 117.49704 * 185.00516 * 22 21 20 25 25 C 1.52999 * 117.49901 * 116.38412 * 22 21 20 26 26 F 1.39902 * 117.49875 * 214.98266 * 25 22 21 27 27 F 1.39903 * 117.49884 * 359.97438 * 25 22 21 28 28 N 1.31962 * 120.84307 * 0.02585 * 13 12 11 29 29 H 0.97005 * 120.00014 * 359.97438 * 1 2 3 30 30 H 1.08004 * 120.42889 * 359.95411 * 10 9 7 31 31 H 1.07996 * 120.66228 * 179.97438 * 11 10 9 32 32 H 1.08001 * 120.25247 * 180.27233 * 12 11 10 33 33 H 0.97006 * 120.00532 * 354.66823 * 14 13 12 34 34 H 0.97006 * 119.99000 * 0.02562 * 19 17 15 35 35 H 1.08994 * 109.47488 * 300.00255 * 20 19 17 36 36 H 1.09000 * 109.47035 * 60.00795 * 20 19 17 37 37 H 1.08999 * 109.47421 * 300.00783 * 21 20 19 38 38 H 1.09005 * 109.46851 * 60.00122 * 21 20 19 39 39 H 1.09003 * 117.49996 * 359.97438 * 24 22 21 40 40 H 1.09002 * 117.50152 * 145.02320 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3965 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0876 -1.2126 -0.0010 9 6 1.3009 -2.4367 -0.0016 10 6 2.0086 -3.6519 -0.0016 11 6 1.3035 -4.8418 -0.0022 12 6 -0.0826 -4.7939 -0.0022 13 6 -0.7278 -3.5551 -0.0011 14 7 -2.1180 -3.5051 -0.0016 15 6 -2.7497 -2.3196 0.1080 16 8 -2.1091 -1.2889 0.1130 17 6 -4.2382 -2.2742 0.2233 18 8 -4.8789 -3.3049 0.2179 19 7 -4.8699 -1.0888 0.3334 20 6 -6.3298 -1.0444 0.4460 21 6 -6.7888 0.4110 0.5566 22 6 -8.3135 0.4573 0.6748 23 1 -8.8477 -0.3593 0.1892 24 6 -8.9803 1.8344 0.6782 25 6 -8.9050 1.0177 1.9698 26 9 -10.0903 0.4426 2.4405 27 9 -8.0102 1.4481 2.9554 28 7 -0.0355 -2.4317 -0.0005 29 1 -0.4850 0.8401 0.0004 30 1 3.0886 -3.6560 -0.0015 31 1 1.8219 -5.7892 -0.0026 32 1 -0.6586 -5.7074 0.0019 33 1 -2.6329 -4.3234 -0.0808 34 1 -4.3578 -0.2650 0.3373 35 1 -6.7765 -1.4997 -0.4379 36 1 -6.6426 -1.5928 1.3345 37 1 -6.3421 0.8667 1.4402 38 1 -6.4760 0.9591 -0.3322 39 1 -8.3326 2.7074 0.5966 40 1 -9.9533 1.9237 0.1952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331302678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:32 Heat of formation + Delta-G solvation = -100.650096 kcal Electronic energy + Delta-G solvation = -28215.939543 eV Core-core repulsion = 23667.744632 eV Total energy + Delta-G solvation = -4548.194911 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.65862 -48.36200 -41.70232 -40.30344 -38.96228 -38.17669 -36.41707 -35.69828 -34.83432 -32.26527 -31.45927 -31.02668 -27.68105 -26.50643 -24.41008 -23.50978 -23.36753 -22.64327 -22.04476 -20.97759 -19.97329 -18.98222 -18.61960 -18.20178 -17.82784 -17.24534 -17.06779 -16.86910 -16.43978 -16.28489 -16.22225 -15.75712 -15.54498 -15.05754 -15.03239 -14.80798 -14.68407 -14.60738 -14.56623 -14.25548 -13.85387 -13.76144 -13.20085 -12.89286 -12.83633 -12.73758 -12.61109 -12.54892 -12.42194 -12.30207 -11.73514 -11.68998 -11.60161 -10.91537 -10.82127 -10.60622 -10.30687 -9.92931 -9.19605 -8.91409 -8.08127 -6.41863 0.38038 1.03099 1.27775 1.38868 1.44159 1.55039 1.57675 2.07534 2.17715 2.28723 2.38761 2.65087 2.98780 3.23103 3.39168 3.53450 3.64531 3.92116 4.02039 4.11779 4.22661 4.33375 4.46816 4.66763 4.68099 4.71777 4.82500 4.85860 4.94642 4.94754 4.99496 5.09435 5.19765 5.27762 5.63694 5.71759 5.90325 5.99186 6.16430 6.30011 6.55557 6.72236 6.85269 7.04740 7.30030 8.25563 8.56449 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.002618 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.227861 B =10690.829607 C =12488.431995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.014 3.986 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.460 4.460 8 H 0.087 0.913 9 C 0.236 3.764 10 C -0.322 4.322 11 C -0.033 4.033 12 C -0.343 4.343 13 C 0.346 3.654 14 N -0.633 5.633 15 C 0.459 3.541 16 O -0.420 6.420 17 C 0.519 3.481 18 O -0.546 6.546 19 N -0.690 5.690 20 C 0.119 3.881 21 C -0.104 4.104 22 C -0.134 4.134 23 H 0.150 0.850 24 C -0.142 4.142 25 C 0.154 3.846 26 F -0.176 7.176 27 F -0.176 7.176 28 N -0.505 5.505 29 H 0.274 0.726 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.424 0.576 34 H 0.419 0.581 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.137 0.863 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.982 4.789 -0.930 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.313 5.313 2 C -0.212 4.212 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.491 4.491 8 H 0.105 0.895 9 C 0.110 3.890 10 C -0.345 4.345 11 C -0.057 4.057 12 C -0.369 4.369 13 C 0.109 3.891 14 N -0.283 5.283 15 C 0.237 3.763 16 O -0.285 6.285 17 C 0.299 3.701 18 O -0.424 6.424 19 N -0.344 5.344 20 C -0.003 4.003 21 C -0.141 4.141 22 C -0.153 4.153 23 H 0.168 0.832 24 C -0.180 4.180 25 C 0.118 3.882 26 F -0.157 7.157 27 F -0.157 7.157 28 N -0.225 5.225 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.262 0.738 34 H 0.256 0.744 35 H 0.104 0.896 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.128 0.872 39 H 0.155 0.845 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.679 5.825 -0.852 19.585 hybrid contribution 0.794 -0.479 0.506 1.056 sum -17.885 5.346 -0.346 18.671 Atomic orbital electron populations 1.70461 1.07340 1.28261 1.25211 1.26992 0.96072 1.03907 0.94220 0.85231 0.79434 0.77011 0.78458 1.18184 1.19364 1.19526 1.19937 0.94528 0.90334 1.44287 0.89534 1.18879 0.87716 0.93533 0.88855 1.21851 0.99395 0.93702 1.19534 1.21039 0.93265 0.97577 0.93847 1.20963 0.95352 0.95583 1.24970 1.19004 0.84083 0.91542 0.94510 1.42987 1.04212 1.10158 1.70946 1.20768 0.88852 0.85487 0.81158 1.91206 1.65875 1.31683 1.39687 1.20079 0.87843 0.84727 0.77440 1.90699 1.67799 1.33723 1.50187 1.45714 1.08949 1.08333 1.71362 1.21585 0.77583 0.98126 1.03025 1.21373 0.92237 0.95317 1.05198 1.23631 0.96670 1.00652 0.94393 0.83199 1.24560 1.05705 0.96062 0.91648 1.20701 0.79916 1.05999 0.81623 1.92995 1.46554 1.85557 1.90575 1.92984 1.67107 1.90223 1.65386 1.68603 1.07580 1.24898 1.21416 0.91475 0.87397 0.84346 0.85289 0.73759 0.74398 0.89612 0.91607 0.90355 0.87187 0.84496 0.83634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -37.37 8.99 21.84 0.20 -37.17 16 2 C 0.01 0.70 5.50 85.29 0.47 1.17 16 3 Si 0.98 38.63 29.56 68.60 2.03 40.65 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 7 C -0.46 -25.30 9.14 23.47 0.21 -25.09 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 9 C 0.24 13.28 6.55 40.21 0.26 13.54 16 10 C -0.32 -15.94 9.83 22.87 0.22 -15.71 16 11 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 12 C -0.34 -14.87 9.95 22.72 0.23 -14.64 16 13 C 0.35 16.89 7.42 133.29 0.99 17.88 16 14 N -0.63 -26.05 5.37 -309.73 -1.66 -27.71 16 15 C 0.46 18.80 7.84 87.24 0.68 19.49 16 16 O -0.42 -20.07 12.24 -3.27 -0.04 -20.11 16 17 C 0.52 17.01 7.89 87.24 0.69 17.69 16 18 O -0.55 -18.90 16.48 -3.27 -0.05 -18.96 16 19 N -0.69 -17.23 5.55 -464.52 -2.58 -19.81 16 20 C 0.12 2.14 5.63 86.38 0.49 2.62 16 21 C -0.10 -1.26 5.59 30.60 0.17 -1.09 16 22 C -0.13 -1.34 5.72 -10.79 -0.06 -1.40 16 23 H 0.15 1.08 8.07 -2.39 -0.02 1.06 16 24 C -0.14 -1.03 10.22 30.60 0.31 -0.72 16 25 C 0.15 2.35 5.20 30.59 0.16 2.51 16 26 F -0.18 -3.33 17.60 44.97 0.79 -2.54 16 27 F -0.18 -3.61 16.48 44.97 0.74 -2.87 16 28 N -0.51 -28.34 5.73 -186.44 -1.07 -29.41 16 29 H 0.27 13.54 8.29 -92.70 -0.77 12.77 16 30 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.14 4.77 8.06 -2.91 -0.02 4.75 16 32 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 33 H 0.42 14.63 8.18 -92.70 -0.76 13.87 16 34 H 0.42 10.07 7.94 -92.70 -0.74 9.34 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.14 7.06 -2.39 -0.02 1.12 16 38 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.15 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -72.64 358.23 3.04 -69.60 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -0.37 Total: 33.26 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 5.05 Total: 15.05 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -5.11 Total: -114.10 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.09 Total: -39.07 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 1.53 Total: -5.40 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.65 kcal Total: -72.64 3.04 -69.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331302678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.047 kcal (2) G-P(sol) polarization free energy of solvation -72.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds