Wall clock time and date at job start Tue Mar 31 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48504 * 109.47171 * 85.00340 * 3 2 1 5 5 H 1.48490 * 109.47510 * 205.00513 * 3 2 1 6 6 H 1.48503 * 109.47063 * 325.00717 * 3 2 1 7 7 C 1.40024 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99809 * 185.89953 * 7 2 1 9 9 C 1.41330 * 120.00215 * 5.90426 * 7 2 1 10 10 C 1.40630 * 119.78807 * 185.83388 * 9 7 2 11 11 C 1.38311 * 119.13217 * 179.76681 * 10 9 7 12 12 C 1.38686 * 118.67481 * 0.50417 * 11 10 9 13 13 C 1.39668 * 119.49269 * 359.73857 * 12 11 10 14 14 N 1.39117 * 119.57794 * 180.02562 * 13 12 11 15 15 C 1.34787 * 119.99923 * 175.00030 * 14 13 12 16 16 O 1.21357 * 119.99758 * 5.53477 * 15 14 13 17 17 C 1.49361 * 119.99703 * 185.53970 * 15 14 13 18 18 O 1.21357 * 120.00539 * 359.97438 * 17 15 14 19 19 N 1.34787 * 119.99703 * 179.97438 * 17 15 14 20 20 C 1.46498 * 119.99712 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.46792 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47211 * 179.97438 * 21 20 19 23 23 H 1.08999 * 115.54644 * 330.67059 * 22 21 20 24 24 C 1.52995 * 117.49667 * 116.37689 * 22 21 20 25 25 C 1.52998 * 60.00123 * 107.49245 * 24 22 21 26 26 F 1.39903 * 117.49424 * 252.50880 * 25 24 22 27 27 F 1.39898 * 117.50368 * 107.48796 * 25 24 22 28 28 N 1.31959 * 120.84459 * 0.02562 * 13 12 11 29 29 H 0.96998 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43565 * 0.02614 * 10 9 7 31 31 H 1.08005 * 120.66464 * 180.22073 * 11 10 9 32 32 H 1.08001 * 120.25905 * 179.72118 * 12 11 10 33 33 H 0.96997 * 120.00578 * 355.00513 * 14 13 12 34 34 H 0.96995 * 119.99496 * 359.97438 * 19 17 15 35 35 H 1.09005 * 109.47047 * 299.99516 * 20 19 17 36 36 H 1.08990 * 109.47489 * 60.00062 * 20 19 17 37 37 H 1.09000 * 109.47378 * 299.99983 * 21 20 19 38 38 H 1.09004 * 109.47392 * 59.99868 * 21 20 19 39 39 H 1.09002 * 117.49363 * 214.98032 * 24 22 21 40 40 H 1.08997 * 117.50213 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3833 2.1074 1.3948 5 1 3.5877 1.4121 -0.5918 6 1 1.4955 2.6199 -0.8029 7 6 2.0075 -1.2126 -0.0005 8 1 3.0833 -1.2151 0.0956 9 6 1.3066 -2.4333 -0.1270 10 6 1.9978 -3.6518 -0.0039 11 6 1.2975 -4.8384 -0.1252 12 6 -0.0655 -4.7841 -0.3755 13 6 -0.6942 -3.5425 -0.4926 14 7 -2.0614 -3.4859 -0.7431 15 6 -2.6953 -2.2965 -0.7577 16 8 -2.0590 -1.2685 -0.6525 17 6 -4.1809 -2.2438 -0.9031 18 8 -4.8172 -3.2718 -1.0087 19 7 -4.8148 -1.0544 -0.9171 20 6 -6.2719 -1.0027 -1.0604 21 6 -6.7341 0.4558 -1.0468 22 6 -8.2558 0.5099 -1.1970 23 1 -8.7020 -0.3099 -1.7599 24 6 -9.0606 1.0874 -0.0310 25 6 -8.9045 1.8898 -1.3242 26 9 -8.0608 3.0054 -1.2943 27 9 -10.0253 2.0026 -2.1538 28 7 -0.0079 -2.4222 -0.3686 29 1 -0.4850 0.8400 0.0004 30 1 3.0607 -3.6610 0.1870 31 1 1.8029 -5.7883 -0.0315 32 1 -0.6364 -5.6950 -0.4794 33 1 -2.5587 -4.3024 -0.9073 34 1 -4.3062 -0.2328 -0.8324 35 1 -6.5609 -1.4662 -2.0036 36 1 -6.7375 -1.5395 -0.2340 37 1 -6.4450 0.9198 -0.1038 38 1 -6.2684 0.9923 -1.8735 39 1 -10.0367 0.6473 0.1735 40 1 -8.5061 1.4282 0.8433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331302680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:36 Heat of formation + Delta-G solvation = -81.726353 kcal Electronic energy + Delta-G solvation = -28117.297420 eV Core-core repulsion = 23569.923104 eV Total energy + Delta-G solvation = -4547.374316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.01748 -47.69857 -40.25371 -38.73812 -37.66149 -37.18661 -35.17039 -34.14831 -33.07961 -30.58373 -30.39711 -29.22615 -25.93643 -25.19321 -23.34960 -22.85725 -21.64569 -21.48116 -21.00083 -19.58099 -18.44061 -18.00211 -17.24115 -17.11057 -16.52919 -16.23975 -15.97447 -15.78773 -14.96802 -14.82258 -14.72708 -14.50504 -14.35160 -14.18200 -13.90464 -13.78075 -13.66963 -13.42847 -13.36786 -12.89699 -12.45755 -12.27198 -12.04872 -12.03089 -11.97035 -11.23234 -11.12110 -11.01467 -10.99977 -10.71642 -10.54970 -10.30736 -10.03046 -9.78818 -9.23301 -9.10515 -9.05036 -8.06863 -7.35980 -7.08438 -6.28927 -4.46095 1.86279 2.50250 2.65840 2.76807 2.80160 3.06156 3.12994 3.15543 3.22036 3.70018 3.85177 3.92476 4.00269 4.08515 4.18118 4.51071 4.75941 4.83547 4.84466 4.96346 4.99829 5.10746 5.29164 5.38316 5.60444 5.71057 5.94027 6.04932 6.23721 6.41110 6.55057 6.72700 6.77696 7.13548 7.20859 7.45900 7.49916 7.74249 7.85785 8.00615 8.13156 8.34662 8.60546 8.89469 8.98997 10.11466 10.38351 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.002591 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.451142 B =10805.746021 C =12854.014483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.667 5.667 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.425 4.425 8 H 0.084 0.916 9 C 0.273 3.727 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.368 3.632 14 N -0.638 5.638 15 C 0.468 3.532 16 O -0.389 6.389 17 C 0.510 3.490 18 O -0.533 6.533 19 N -0.707 5.707 20 C 0.124 3.876 21 C -0.108 4.108 22 C -0.142 4.142 23 H 0.136 0.864 24 C -0.172 4.172 25 C 0.193 3.807 26 F -0.158 7.158 27 F -0.162 7.162 28 N -0.477 5.477 29 H 0.272 0.728 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 2.811 -0.862 17.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.285 5.285 2 C -0.167 4.167 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.456 4.456 8 H 0.102 0.898 9 C 0.148 3.852 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.130 3.870 14 N -0.287 5.287 15 C 0.244 3.756 16 O -0.252 6.252 17 C 0.292 3.708 18 O -0.410 6.410 19 N -0.362 5.362 20 C 0.000 4.000 21 C -0.146 4.146 22 C -0.161 4.161 23 H 0.154 0.846 24 C -0.210 4.210 25 C 0.157 3.843 26 F -0.139 7.139 27 F -0.143 7.143 28 N -0.196 5.196 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.586 3.916 -0.944 18.041 hybrid contribution 0.557 0.008 -0.116 0.569 sum -17.029 3.924 -1.059 17.507 Atomic orbital electron populations 1.70229 1.06142 1.27547 1.24625 1.26127 0.95064 1.00706 0.94781 0.86460 0.80741 0.81672 0.78837 1.19725 1.18654 1.20205 1.19579 0.94535 0.89455 1.41995 0.89813 1.18356 0.86993 0.92050 0.87826 1.21660 0.99376 0.93469 1.17820 1.20588 0.93137 0.96699 0.95560 1.20510 0.95918 0.94906 1.26089 1.18517 0.83056 0.91206 0.94230 1.42988 1.07423 1.09008 1.69269 1.20083 0.87105 0.86034 0.82369 1.91192 1.64829 1.31135 1.38029 1.20809 0.89665 0.83698 0.76663 1.90700 1.68369 1.33493 1.48405 1.45699 1.07756 1.09406 1.73337 1.21311 0.80012 0.95824 1.02846 1.21411 0.91521 0.97126 1.04528 1.23592 0.96448 0.94887 1.01192 0.84641 1.24490 1.04012 0.99500 0.92970 1.20069 0.83199 0.83949 0.97132 1.93042 1.69866 1.54185 1.96762 1.93033 1.51246 1.96564 1.73416 1.68576 1.07615 1.23498 1.19893 0.91605 0.88348 0.88347 0.88696 0.75289 0.74802 0.90841 0.90732 0.89696 0.89434 0.85827 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -17.46 9.17 55.55 0.51 -16.95 16 2 C 0.06 1.56 5.48 -17.35 -0.10 1.47 16 3 Si 0.90 18.53 29.56 -169.99 -5.03 13.51 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.43 -11.32 9.13 -37.74 -0.34 -11.66 16 8 H 0.08 2.09 7.85 -52.48 -0.41 1.68 16 9 C 0.27 7.46 6.53 -85.00 -0.56 6.90 16 10 C -0.30 -7.36 9.83 -38.65 -0.38 -7.74 16 11 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 12 C -0.35 -7.75 9.95 -38.88 -0.39 -8.14 16 13 C 0.37 8.88 7.42 -155.08 -1.15 7.73 16 14 N -0.64 -12.99 5.37 -11.84 -0.06 -13.06 16 15 C 0.47 9.37 7.84 -11.62 -0.09 9.27 16 16 O -0.39 -9.01 12.35 5.49 0.07 -8.94 16 17 C 0.51 8.31 7.89 -11.62 -0.09 8.22 16 18 O -0.53 -9.26 16.48 5.49 0.09 -9.17 16 19 N -0.71 -8.92 5.55 -60.76 -0.34 -9.25 16 20 C 0.12 1.14 5.63 -4.04 -0.02 1.12 16 21 C -0.11 -0.77 5.25 -26.73 -0.14 -0.91 16 22 C -0.14 -0.87 5.72 -90.62 -0.52 -1.39 16 23 H 0.14 0.67 8.07 -51.93 -0.42 0.25 16 24 C -0.17 -0.90 10.15 -26.73 -0.27 -1.17 16 25 C 0.19 1.54 5.20 -26.73 -0.14 1.40 16 26 F -0.16 -1.57 17.14 2.25 0.04 -1.53 16 27 F -0.16 -1.52 17.60 2.25 0.04 -1.48 16 28 N -0.48 -12.99 5.77 -10.28 -0.06 -13.05 16 29 H 0.27 6.57 8.29 -40.82 -0.34 6.23 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.10 1.85 8.06 -52.48 -0.42 1.42 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 33 H 0.41 7.14 8.18 -40.82 -0.33 6.81 16 34 H 0.42 5.07 7.94 -40.82 -0.32 4.75 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.12 0.56 8.03 -51.93 -0.42 0.14 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -32.18 359.50 -8.32 -40.50 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -4.41 Total: 10.10 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -4.59 Total: 3.90 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.05 Total: -52.31 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.16 Total: -18.11 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.08 Total: -3.01 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.18 -8.32 -40.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331302680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.229 kcal (2) G-P(sol) polarization free energy of solvation -32.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds