Wall clock time and date at job start Tue Mar 31 2020 22:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86802 * 119.99949 * 2 1 4 4 H 1.48504 * 109.47171 * 85.00340 * 3 2 1 5 5 H 1.48490 * 109.47510 * 205.00513 * 3 2 1 6 6 H 1.48503 * 109.47063 * 325.00717 * 3 2 1 7 7 C 1.40024 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99809 * 185.89953 * 7 2 1 9 9 C 1.41330 * 120.00215 * 5.90426 * 7 2 1 10 10 C 1.40630 * 119.78807 * 185.83388 * 9 7 2 11 11 C 1.38311 * 119.13217 * 179.76681 * 10 9 7 12 12 C 1.38686 * 118.67481 * 0.50417 * 11 10 9 13 13 C 1.39668 * 119.49269 * 359.73857 * 12 11 10 14 14 N 1.39117 * 119.57794 * 180.02562 * 13 12 11 15 15 C 1.34787 * 119.99923 * 175.00030 * 14 13 12 16 16 O 1.21357 * 119.99758 * 5.53477 * 15 14 13 17 17 C 1.49361 * 119.99703 * 185.53970 * 15 14 13 18 18 O 1.21357 * 120.00539 * 359.97438 * 17 15 14 19 19 N 1.34787 * 119.99703 * 179.97438 * 17 15 14 20 20 C 1.46498 * 119.99712 * 179.97438 * 19 17 15 21 21 C 1.52998 * 109.46792 * 180.02562 * 20 19 17 22 22 C 1.53004 * 109.47211 * 179.97438 * 21 20 19 23 23 H 1.08999 * 115.54644 * 330.67059 * 22 21 20 24 24 C 1.52995 * 117.49667 * 116.37689 * 22 21 20 25 25 C 1.52998 * 60.00123 * 107.49245 * 24 22 21 26 26 F 1.39903 * 117.49424 * 252.50880 * 25 24 22 27 27 F 1.39898 * 117.50368 * 107.48796 * 25 24 22 28 28 N 1.31959 * 120.84459 * 0.02562 * 13 12 11 29 29 H 0.96998 * 120.00206 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.43565 * 0.02614 * 10 9 7 31 31 H 1.08005 * 120.66464 * 180.22073 * 11 10 9 32 32 H 1.08001 * 120.25905 * 179.72118 * 12 11 10 33 33 H 0.96997 * 120.00578 * 355.00513 * 14 13 12 34 34 H 0.96995 * 119.99496 * 359.97438 * 19 17 15 35 35 H 1.09005 * 109.47047 * 299.99516 * 20 19 17 36 36 H 1.08990 * 109.47489 * 60.00062 * 20 19 17 37 37 H 1.09000 * 109.47378 * 299.99983 * 21 20 19 38 38 H 1.09004 * 109.47392 * 59.99868 * 21 20 19 39 39 H 1.09002 * 117.49363 * 214.98032 * 24 22 21 40 40 H 1.08997 * 117.50213 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3833 2.1074 1.3948 5 1 3.5877 1.4121 -0.5918 6 1 1.4955 2.6199 -0.8029 7 6 2.0075 -1.2126 -0.0005 8 1 3.0833 -1.2151 0.0956 9 6 1.3066 -2.4333 -0.1270 10 6 1.9978 -3.6518 -0.0039 11 6 1.2975 -4.8384 -0.1252 12 6 -0.0655 -4.7841 -0.3755 13 6 -0.6942 -3.5425 -0.4926 14 7 -2.0614 -3.4859 -0.7431 15 6 -2.6953 -2.2965 -0.7577 16 8 -2.0590 -1.2685 -0.6525 17 6 -4.1809 -2.2438 -0.9031 18 8 -4.8172 -3.2718 -1.0087 19 7 -4.8148 -1.0544 -0.9171 20 6 -6.2719 -1.0027 -1.0604 21 6 -6.7341 0.4558 -1.0468 22 6 -8.2558 0.5099 -1.1970 23 1 -8.7020 -0.3099 -1.7599 24 6 -9.0606 1.0874 -0.0310 25 6 -8.9045 1.8898 -1.3242 26 9 -8.0608 3.0054 -1.2943 27 9 -10.0253 2.0026 -2.1538 28 7 -0.0079 -2.4222 -0.3686 29 1 -0.4850 0.8400 0.0004 30 1 3.0607 -3.6610 0.1870 31 1 1.8029 -5.7883 -0.0315 32 1 -0.6364 -5.6950 -0.4794 33 1 -2.5587 -4.3024 -0.9073 34 1 -4.3062 -0.2328 -0.8324 35 1 -6.5609 -1.4662 -2.0036 36 1 -6.7375 -1.5395 -0.2340 37 1 -6.4450 0.9198 -0.1038 38 1 -6.2684 0.9923 -1.8735 39 1 -10.0367 0.6473 0.1735 40 1 -8.5061 1.4282 0.8433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331302680.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:35 Heat of formation + Delta-G solvation = -102.039371 kcal Electronic energy + Delta-G solvation = -28118.178258 eV Core-core repulsion = 23569.923104 eV Total energy + Delta-G solvation = -4548.255155 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.65446 -48.35704 -41.69612 -40.29881 -38.96563 -38.20337 -36.40536 -35.68423 -34.83448 -32.27022 -31.43391 -31.02272 -27.68270 -26.50979 -24.45885 -23.50315 -23.33693 -22.63664 -22.05956 -20.97591 -19.96923 -18.98275 -18.56484 -18.21252 -17.74278 -17.20737 -17.05140 -16.89902 -16.45192 -16.28366 -16.07848 -15.99604 -15.50962 -15.11666 -15.03469 -14.86901 -14.65973 -14.61847 -14.45723 -14.26570 -13.85378 -13.75897 -13.11441 -12.90963 -12.85930 -12.72272 -12.68397 -12.57772 -12.47941 -12.30250 -11.79099 -11.57730 -11.55413 -10.90277 -10.87692 -10.58946 -10.28389 -9.93917 -9.19599 -8.91174 -8.13019 -6.40771 0.38551 1.03802 1.27785 1.38779 1.43687 1.54058 1.57445 2.05025 2.17404 2.28212 2.39516 2.67480 2.97957 3.23777 3.39124 3.53486 3.60940 3.93091 4.01919 4.11661 4.23739 4.33864 4.46518 4.67623 4.68456 4.73124 4.82769 4.86616 4.94714 4.95053 4.99836 5.09075 5.20595 5.27556 5.64035 5.71740 5.90636 5.99744 6.16485 6.30278 6.55578 6.72802 6.85936 7.04266 7.30036 8.25167 8.55096 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.002591 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.451142 B =10805.746021 C =12854.014483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.017 3.983 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.260 1.260 6 H -0.272 1.272 7 C -0.463 4.463 8 H 0.087 0.913 9 C 0.238 3.762 10 C -0.322 4.322 11 C -0.033 4.033 12 C -0.342 4.342 13 C 0.347 3.653 14 N -0.633 5.633 15 C 0.460 3.540 16 O -0.424 6.424 17 C 0.521 3.479 18 O -0.544 6.544 19 N -0.692 5.692 20 C 0.123 3.877 21 C -0.102 4.102 22 C -0.134 4.134 23 H 0.151 0.849 24 C -0.150 4.150 25 C 0.163 3.837 26 F -0.175 7.175 27 F -0.175 7.175 28 N -0.507 5.507 29 H 0.275 0.725 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.425 0.575 34 H 0.418 0.582 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.144 0.856 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.059 2.240 -0.560 18.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.208 4.208 3 Si 0.797 3.203 4 H -0.190 1.190 5 H -0.184 1.184 6 H -0.197 1.197 7 C -0.494 4.494 8 H 0.105 0.895 9 C 0.113 3.887 10 C -0.345 4.345 11 C -0.057 4.057 12 C -0.368 4.368 13 C 0.109 3.891 14 N -0.283 5.283 15 C 0.238 3.762 16 O -0.289 6.289 17 C 0.301 3.699 18 O -0.422 6.422 19 N -0.345 5.345 20 C 0.001 3.999 21 C -0.139 4.139 22 C -0.153 4.153 23 H 0.168 0.832 24 C -0.187 4.187 25 C 0.126 3.874 26 F -0.156 7.156 27 F -0.155 7.155 28 N -0.227 5.227 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.263 0.737 34 H 0.255 0.745 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.162 0.838 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.752 3.327 -0.647 19.056 hybrid contribution 0.827 0.057 -0.226 0.859 sum -17.925 3.384 -0.873 18.263 Atomic orbital electron populations 1.70364 1.07517 1.28484 1.25286 1.26939 0.95968 1.03876 0.94058 0.85290 0.79146 0.76823 0.79001 1.18967 1.18365 1.19708 1.19892 0.94923 0.90522 1.44027 0.89532 1.18848 0.87743 0.93481 0.88646 1.21854 1.00102 0.93710 1.18870 1.21045 0.93270 0.97594 0.93781 1.20965 0.96337 0.95553 1.23910 1.18986 0.84478 0.91489 0.94177 1.42987 1.06320 1.10044 1.68925 1.20795 0.88904 0.85376 0.81116 1.91186 1.66183 1.32153 1.39366 1.20009 0.87676 0.84711 0.77524 1.90700 1.67849 1.33954 1.49683 1.45742 1.09316 1.08191 1.71260 1.21541 0.77473 0.97403 1.03488 1.21334 0.92320 0.95541 1.04721 1.23603 0.95697 0.94110 1.01901 0.83152 1.24647 1.04834 0.97183 0.92082 1.20542 0.83434 0.84120 0.99286 1.92999 1.70419 1.55228 1.96945 1.92998 1.51846 1.96626 1.74062 1.68537 1.07932 1.25288 1.20948 0.91404 0.87415 0.84326 0.85195 0.73701 0.74539 0.90255 0.89828 0.89169 0.89903 0.83821 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -37.65 9.17 21.84 0.20 -37.45 16 2 C 0.02 0.89 5.48 85.29 0.47 1.36 16 3 Si 0.98 38.83 29.56 68.60 2.03 40.86 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.46 -25.45 9.13 23.46 0.21 -25.24 16 8 H 0.09 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.24 13.39 6.53 40.21 0.26 13.65 16 10 C -0.32 -15.90 9.83 22.87 0.22 -15.67 16 11 C -0.03 -1.40 10.15 22.39 0.23 -1.18 16 12 C -0.34 -14.66 9.95 22.72 0.23 -14.43 16 13 C 0.35 16.75 7.42 133.29 0.99 17.74 16 14 N -0.63 -25.62 5.37 -309.71 -1.66 -27.28 16 15 C 0.46 18.55 7.84 87.24 0.68 19.23 16 16 O -0.42 -20.17 12.35 -3.27 -0.04 -20.21 16 17 C 0.52 16.52 7.89 87.24 0.69 17.21 16 18 O -0.54 -18.05 16.48 -3.27 -0.05 -18.11 16 19 N -0.69 -16.65 5.55 -464.50 -2.58 -19.23 16 20 C 0.12 2.01 5.63 86.38 0.49 2.49 16 21 C -0.10 -1.25 5.25 30.60 0.16 -1.09 16 22 C -0.13 -1.35 5.72 -10.79 -0.06 -1.41 16 23 H 0.15 1.07 8.07 -2.39 -0.02 1.05 16 24 C -0.15 -1.19 10.15 30.59 0.31 -0.88 16 25 C 0.16 2.40 5.20 30.59 0.16 2.56 16 26 F -0.18 -3.41 17.14 44.97 0.77 -2.64 16 27 F -0.17 -3.16 17.60 44.97 0.79 -2.37 16 28 N -0.51 -28.32 5.77 -186.43 -1.08 -29.40 16 29 H 0.28 13.67 8.29 -92.71 -0.77 12.90 16 30 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 32 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 33 H 0.42 14.30 8.18 -92.71 -0.76 13.54 16 34 H 0.42 9.96 7.94 -92.71 -0.74 9.22 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.05 7.88 -2.39 -0.02 1.03 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.13 0.83 8.03 -2.39 -0.02 0.81 16 Total: -1.00 -71.74 359.50 3.05 -68.69 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: -0.37 Total: 32.80 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 5.04 Total: 14.33 kcal Atomic # 7 Polarization: -108.24 SS G_CDS: -5.12 Total: -113.35 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.09 Total: -38.32 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 1.56 Total: -5.01 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -71.74 3.05 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331302680.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.347 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds