Wall clock time and date at job start Tue Mar 31 2020 22:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86797 * 120.00435 * 2 1 4 4 H 1.48501 * 109.47093 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46772 * 29.99481 * 3 2 1 6 6 H 1.48492 * 109.47377 * 149.99921 * 3 2 1 7 7 C 1.40034 * 119.99421 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99625 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00630 * 0.02562 * 7 2 1 10 10 C 1.40623 * 119.79048 * 180.02562 * 9 7 2 11 11 C 1.38309 * 119.14046 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66658 * 359.97438 * 11 10 9 13 13 C 1.39664 * 119.49321 * 359.97438 * 12 11 10 14 14 N 1.39122 * 119.57915 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00410 * 185.31281 * 14 13 12 16 16 O 1.21354 * 119.99890 * 354.85180 * 15 14 13 17 17 C 1.49372 * 120.00198 * 174.84572 * 15 14 13 18 18 O 1.21362 * 119.99617 * 0.02562 * 17 15 14 19 19 N 1.34773 * 120.00198 * 180.02562 * 17 15 14 20 20 C 1.46493 * 120.00155 * 180.02562 * 19 17 15 21 21 H 1.09000 * 110.54073 * 32.38569 * 20 19 17 22 22 C 1.54267 * 110.48781 * 155.00271 * 20 19 17 23 23 C 1.53875 * 106.60036 * 142.28904 * 22 20 19 24 24 C 1.54268 * 106.63950 * 359.97438 * 23 22 20 25 25 F 1.39900 * 110.48845 * 95.09156 * 24 23 22 26 26 F 1.39901 * 110.48400 * 217.73671 * 24 23 22 27 27 C 1.54896 * 110.48634 * 269.77954 * 20 19 17 28 28 N 1.31959 * 120.85106 * 0.27733 * 13 12 11 29 29 H 0.96998 * 119.99604 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43039 * 359.97438 * 10 9 7 31 31 H 1.07993 * 120.66575 * 180.02562 * 11 10 9 32 32 H 1.07999 * 120.25104 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99485 * 5.31137 * 14 13 12 34 34 H 0.97002 * 120.00116 * 0.02562 * 19 17 15 35 35 H 1.08998 * 110.03104 * 23.00378 * 22 20 19 36 36 H 1.09005 * 110.07130 * 261.59624 * 22 20 19 37 37 H 1.08995 * 110.03177 * 119.28236 * 23 22 20 38 38 H 1.08996 * 110.03568 * 240.66683 * 23 22 20 39 39 H 1.09000 * 110.75398 * 321.69070 * 27 20 19 40 40 H 1.08990 * 110.75522 * 84.88126 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4400 0.7000 7 6 2.0074 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0001 9 6 1.3008 -2.4368 0.0005 10 6 2.0084 -3.6520 0.0016 11 6 1.3033 -4.8419 0.0022 12 6 -0.0828 -4.7939 0.0021 13 6 -0.7279 -3.5552 0.0021 14 7 -2.1182 -3.5049 0.0016 15 6 -2.7497 -2.3192 -0.1065 16 8 -2.1091 -1.2886 -0.1093 17 6 -4.2382 -2.2737 -0.2231 18 8 -4.8789 -3.3044 -0.2200 19 7 -4.8697 -1.0880 -0.3317 20 6 -6.3295 -1.0433 -0.4454 21 1 -6.7818 -1.8643 0.1109 22 6 -6.8690 0.3116 0.0576 23 6 -8.0361 0.6919 -0.8703 24 6 -8.1655 -0.4443 -1.9058 25 9 -9.1268 -1.3740 -1.4950 26 9 -8.4903 0.0745 -3.1638 27 6 -6.7592 -1.0947 -1.9327 28 7 -0.0357 -2.4317 -0.0033 29 1 -0.4849 0.8401 -0.0004 30 1 3.0884 -3.6562 0.0021 31 1 1.8217 -5.7893 0.0034 32 1 -0.6588 -5.7074 0.0021 33 1 -2.6331 -4.3234 0.0789 34 1 -4.3576 -0.2642 -0.3345 35 1 -6.0866 1.0685 0.0030 36 1 -7.2240 0.2152 1.0837 37 1 -8.9575 0.7793 -0.2948 38 1 -7.8205 1.6338 -1.3746 39 1 -6.0769 -0.5127 -2.5522 40 1 -6.8136 -2.1252 -2.2836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334097652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:54 Heat of formation + Delta-G solvation = -113.792763 kcal Electronic energy + Delta-G solvation = -29031.451782 eV Core-core repulsion = 24482.686962 eV Total energy + Delta-G solvation = -4548.764820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.14065 -47.27673 -40.41123 -38.93924 -37.69592 -37.09657 -34.52580 -33.53536 -32.97711 -30.42169 -29.37942 -29.21271 -27.77450 -25.78953 -24.40632 -21.97043 -21.48489 -21.30725 -20.95538 -19.70539 -18.40966 -17.94040 -17.40267 -17.01111 -16.51930 -16.23116 -15.88234 -15.38354 -15.05801 -14.85056 -14.73122 -14.51788 -14.40751 -13.79984 -13.72881 -13.60200 -13.52526 -13.41637 -12.93364 -12.76382 -12.61102 -12.10050 -12.05854 -12.01818 -11.83400 -11.29660 -11.23663 -11.11678 -11.03946 -11.00758 -10.72613 -10.55693 -10.01560 -9.84957 -9.34809 -9.13772 -9.07895 -8.07323 -7.38183 -7.10519 -6.26380 -4.49021 1.80184 2.58078 2.77454 3.03930 3.10644 3.13397 3.20337 3.37198 3.52066 3.76509 3.93776 3.96367 3.98528 4.16539 4.55503 4.71686 4.76659 4.82069 4.84806 4.89557 4.97635 5.27231 5.38564 5.55346 5.64069 5.66042 5.92864 6.03132 6.20462 6.39339 6.53416 6.70711 6.76088 7.10621 7.15980 7.43154 7.48456 7.72717 7.82026 7.97496 8.10112 8.32347 8.57584 8.88010 8.97084 10.10069 10.37186 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002997 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.037070 B = 9338.887795 C =10938.730723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.664 5.664 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.423 4.423 8 H 0.084 0.916 9 C 0.271 3.729 10 C -0.299 4.299 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.368 3.632 14 N -0.638 5.638 15 C 0.467 3.533 16 O -0.386 6.386 17 C 0.511 3.489 18 O -0.529 6.529 19 N -0.699 5.699 20 C 0.143 3.857 21 H 0.109 0.891 22 C -0.129 4.129 23 C -0.158 4.158 24 C 0.281 3.719 25 F -0.193 7.193 26 F -0.196 7.196 27 C -0.174 4.174 28 N -0.475 5.475 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.417 0.583 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 3.130 -0.757 15.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.283 5.283 2 C -0.169 4.169 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.454 4.454 8 H 0.102 0.898 9 C 0.146 3.854 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.130 3.870 14 N -0.286 5.286 15 C 0.243 3.757 16 O -0.248 6.248 17 C 0.293 3.707 18 O -0.405 6.405 19 N -0.353 5.353 20 C 0.038 3.962 21 H 0.127 0.873 22 C -0.167 4.167 23 C -0.196 4.196 24 C 0.244 3.756 25 F -0.174 7.174 26 F -0.177 7.177 27 C -0.213 4.213 28 N -0.194 5.194 29 H 0.083 0.917 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.254 0.746 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.375 4.178 -0.786 15.952 hybrid contribution 0.530 -0.291 -0.158 0.625 sum -14.845 3.888 -0.945 15.375 Atomic orbital electron populations 1.70307 1.05956 1.27328 1.24672 1.26160 0.95131 1.00675 0.94903 0.86475 0.80597 0.81581 0.79063 1.19620 1.20290 1.18716 1.19596 0.94157 0.89305 1.42344 0.89828 1.18366 0.86966 0.92066 0.88006 1.21659 0.98702 0.93460 1.18442 1.20591 0.93076 0.96698 0.95665 1.20514 0.94840 0.94945 1.27104 1.18531 0.82590 0.91255 0.94648 1.42987 1.05329 1.09096 1.71233 1.20061 0.87025 0.86156 0.82462 1.91217 1.64482 1.30713 1.38407 1.20933 0.89857 0.83781 0.76162 1.90713 1.68159 1.33126 1.48483 1.45731 1.06517 1.09614 1.73454 1.21710 0.80756 0.99270 0.94503 0.87323 1.22409 0.97658 0.96592 1.00082 1.23104 1.01336 0.98093 0.97068 1.21796 0.86824 0.86961 0.80020 1.93028 1.66542 1.67624 1.90175 1.93016 1.93990 1.87216 1.43477 1.23927 0.93678 1.04126 0.99586 1.68641 1.07298 1.23137 1.20342 0.91710 0.88347 0.88328 0.88699 0.75282 0.74590 0.89316 0.89383 0.88649 0.88062 0.87564 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.14 8.99 55.55 0.50 -16.64 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 3 Si 0.90 18.28 29.56 -169.99 -5.02 13.25 16 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 5 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.42 -11.17 9.14 -37.73 -0.34 -11.52 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.65 16 9 C 0.27 7.35 6.55 -85.00 -0.56 6.79 16 10 C -0.30 -7.30 9.83 -38.66 -0.38 -7.68 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.35 -7.70 9.95 -38.88 -0.39 -8.08 16 13 C 0.37 8.78 7.42 -155.08 -1.15 7.63 16 14 N -0.64 -12.82 5.37 -11.84 -0.06 -12.88 16 15 C 0.47 9.15 7.84 -11.62 -0.09 9.06 16 16 O -0.39 -8.73 12.24 5.49 0.07 -8.67 16 17 C 0.51 8.11 7.89 -11.62 -0.09 8.02 16 18 O -0.53 -9.01 16.13 5.49 0.09 -8.92 16 19 N -0.70 -8.52 5.15 -52.65 -0.27 -8.79 16 20 C 0.14 1.41 3.22 -66.27 -0.21 1.19 16 21 H 0.11 1.18 7.56 -51.93 -0.39 0.79 16 22 C -0.13 -0.89 6.53 -25.61 -0.17 -1.05 16 23 C -0.16 -1.04 6.41 -25.61 -0.16 -1.21 16 24 C 0.28 2.63 2.50 -25.03 -0.06 2.57 16 25 F -0.19 -2.12 17.17 2.25 0.04 -2.08 16 26 F -0.20 -2.12 17.17 2.25 0.04 -2.08 16 27 C -0.17 -1.70 6.16 -24.69 -0.15 -1.85 16 28 N -0.47 -12.82 5.73 -10.28 -0.06 -12.88 16 29 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.41 7.07 8.18 -40.82 -0.33 6.73 16 34 H 0.42 4.79 7.84 -40.82 -0.32 4.47 16 35 H 0.09 0.54 7.73 -51.93 -0.40 0.14 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 38 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 350.19 15.07 5.28 5.28 Total: -1.00 -31.34 350.19 -8.04 -39.38 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -4.37 Total: 10.96 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -4.26 Total: 4.07 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.11 Total: -51.20 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.16 Total: -17.59 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.08 Total: -4.16 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.25 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.34 -8.04 -39.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334097652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.411 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds