Wall clock time and date at job start Tue Mar 31 2020 22:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86797 * 120.00435 * 2 1 4 4 H 1.48501 * 109.47093 * 270.00399 * 3 2 1 5 5 H 1.48503 * 109.46772 * 29.99481 * 3 2 1 6 6 H 1.48492 * 109.47377 * 149.99921 * 3 2 1 7 7 C 1.40034 * 119.99421 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99625 * 179.97438 * 7 2 1 9 9 C 1.41330 * 120.00630 * 0.02562 * 7 2 1 10 10 C 1.40623 * 119.79048 * 180.02562 * 9 7 2 11 11 C 1.38309 * 119.14046 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.66658 * 359.97438 * 11 10 9 13 13 C 1.39664 * 119.49321 * 359.97438 * 12 11 10 14 14 N 1.39122 * 119.57915 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00410 * 185.31281 * 14 13 12 16 16 O 1.21354 * 119.99890 * 354.85180 * 15 14 13 17 17 C 1.49372 * 120.00198 * 174.84572 * 15 14 13 18 18 O 1.21362 * 119.99617 * 0.02562 * 17 15 14 19 19 N 1.34773 * 120.00198 * 180.02562 * 17 15 14 20 20 C 1.46493 * 120.00155 * 180.02562 * 19 17 15 21 21 H 1.09000 * 110.54073 * 32.38569 * 20 19 17 22 22 C 1.54267 * 110.48781 * 155.00271 * 20 19 17 23 23 C 1.53875 * 106.60036 * 142.28904 * 22 20 19 24 24 C 1.54268 * 106.63950 * 359.97438 * 23 22 20 25 25 F 1.39900 * 110.48845 * 95.09156 * 24 23 22 26 26 F 1.39901 * 110.48400 * 217.73671 * 24 23 22 27 27 C 1.54896 * 110.48634 * 269.77954 * 20 19 17 28 28 N 1.31959 * 120.85106 * 0.27733 * 13 12 11 29 29 H 0.96998 * 119.99604 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.43039 * 359.97438 * 10 9 7 31 31 H 1.07993 * 120.66575 * 180.02562 * 11 10 9 32 32 H 1.07999 * 120.25104 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99485 * 5.31137 * 14 13 12 34 34 H 0.97002 * 120.00116 * 0.02562 * 19 17 15 35 35 H 1.08998 * 110.03104 * 23.00378 * 22 20 19 36 36 H 1.09005 * 110.07130 * 261.59624 * 22 20 19 37 37 H 1.08995 * 110.03177 * 119.28236 * 23 22 20 38 38 H 1.08996 * 110.03568 * 240.66683 * 23 22 20 39 39 H 1.09000 * 110.75398 * 321.69070 * 27 20 19 40 40 H 1.08990 * 110.75522 * 84.88126 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4890 2.0463 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4400 0.7000 7 6 2.0074 -1.2128 0.0005 8 1 3.0875 -1.2128 0.0001 9 6 1.3008 -2.4368 0.0005 10 6 2.0084 -3.6520 0.0016 11 6 1.3033 -4.8419 0.0022 12 6 -0.0828 -4.7939 0.0021 13 6 -0.7279 -3.5552 0.0021 14 7 -2.1182 -3.5049 0.0016 15 6 -2.7497 -2.3192 -0.1065 16 8 -2.1091 -1.2886 -0.1093 17 6 -4.2382 -2.2737 -0.2231 18 8 -4.8789 -3.3044 -0.2200 19 7 -4.8697 -1.0880 -0.3317 20 6 -6.3295 -1.0433 -0.4454 21 1 -6.7818 -1.8643 0.1109 22 6 -6.8690 0.3116 0.0576 23 6 -8.0361 0.6919 -0.8703 24 6 -8.1655 -0.4443 -1.9058 25 9 -9.1268 -1.3740 -1.4950 26 9 -8.4903 0.0745 -3.1638 27 6 -6.7592 -1.0947 -1.9327 28 7 -0.0357 -2.4317 -0.0033 29 1 -0.4849 0.8401 -0.0004 30 1 3.0884 -3.6562 0.0021 31 1 1.8217 -5.7893 0.0034 32 1 -0.6588 -5.7074 0.0021 33 1 -2.6331 -4.3234 0.0789 34 1 -4.3576 -0.2642 -0.3345 35 1 -6.0866 1.0685 0.0030 36 1 -7.2240 0.2152 1.0837 37 1 -8.9575 0.7793 -0.2948 38 1 -7.8205 1.6338 -1.3746 39 1 -6.0769 -0.5127 -2.5522 40 1 -6.8136 -2.1252 -2.2836 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334097652.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:54 Heat of formation + Delta-G solvation = -133.440308 kcal Electronic energy + Delta-G solvation = -29032.303763 eV Core-core repulsion = 24482.686962 eV Total energy + Delta-G solvation = -4549.616802 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.93648 -48.08690 -41.78483 -40.43642 -39.11382 -38.31445 -36.16464 -35.04139 -34.36075 -32.26391 -31.08263 -30.02038 -28.66955 -27.58259 -25.82062 -23.57959 -22.97244 -22.16224 -21.96828 -21.14054 -19.98761 -18.92679 -18.76792 -18.16163 -17.80056 -17.46993 -16.93716 -16.63783 -16.43536 -16.28921 -16.17918 -15.74310 -15.52443 -15.20631 -15.07035 -14.94722 -14.63503 -14.42142 -14.28255 -13.93024 -13.77065 -13.52401 -13.42175 -12.87420 -12.73815 -12.71692 -12.62421 -12.56115 -12.51328 -12.30888 -11.82417 -11.80156 -11.74795 -11.59443 -10.90985 -10.63060 -10.39298 -9.92906 -9.20147 -8.91744 -8.08195 -6.41856 0.35360 1.02816 1.27065 1.32694 1.44569 1.54807 1.57703 2.29029 2.35492 2.51551 2.72018 2.88638 2.98710 3.13295 3.39659 3.51852 3.87359 4.01085 4.02162 4.09834 4.18172 4.25648 4.33187 4.59483 4.67776 4.80918 4.82244 4.85868 4.91006 4.94585 4.99246 5.07302 5.24302 5.27880 5.63383 5.71146 5.90131 5.97488 6.15515 6.29411 6.54808 6.71089 6.83344 7.04742 7.28904 8.25126 8.56563 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.002997 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.037070 B = 9338.887795 C =10938.730723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.016 3.984 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.086 0.914 9 C 0.237 3.763 10 C -0.322 4.322 11 C -0.034 4.034 12 C -0.344 4.344 13 C 0.348 3.652 14 N -0.634 5.634 15 C 0.460 3.540 16 O -0.418 6.418 17 C 0.522 3.478 18 O -0.542 6.542 19 N -0.680 5.680 20 C 0.140 3.860 21 H 0.100 0.900 22 C -0.121 4.121 23 C -0.148 4.148 24 C 0.275 3.725 25 F -0.204 7.204 26 F -0.205 7.205 27 C -0.174 4.174 28 N -0.505 5.505 29 H 0.275 0.725 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.424 0.576 34 H 0.422 0.578 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 3.805 -0.469 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.210 4.210 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.111 3.889 10 C -0.345 4.345 11 C -0.058 4.058 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.283 5.283 15 C 0.238 3.762 16 O -0.282 6.282 17 C 0.302 3.698 18 O -0.419 6.419 19 N -0.334 5.334 20 C 0.035 3.965 21 H 0.118 0.882 22 C -0.159 4.159 23 C -0.186 4.186 24 C 0.239 3.761 25 F -0.185 7.185 26 F -0.186 7.186 27 C -0.213 4.213 28 N -0.225 5.225 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.262 0.738 34 H 0.260 0.740 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.129 0.871 38 H 0.136 0.864 39 H 0.129 0.871 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.294 4.838 -0.500 17.005 hybrid contribution 0.728 -0.651 -0.278 1.015 sum -15.567 4.187 -0.778 16.139 Atomic orbital electron populations 1.70443 1.07309 1.28359 1.25126 1.26959 0.96057 1.03793 0.94190 0.85307 0.79098 0.76825 0.79054 1.19252 1.19387 1.18410 1.19917 0.94543 0.90381 1.44336 0.89569 1.18855 0.87707 0.93474 0.88827 1.21851 0.99392 0.93716 1.19553 1.21041 0.93293 0.97577 0.93861 1.20956 0.95335 0.95606 1.25013 1.18983 0.84052 0.91506 0.94484 1.42991 1.04225 1.10150 1.70961 1.20717 0.88733 0.85496 0.81231 1.91211 1.65785 1.31636 1.39598 1.20163 0.87907 0.84780 0.76901 1.90714 1.67718 1.33731 1.49786 1.45700 1.07694 1.08485 1.71482 1.21900 0.78748 1.01125 0.94716 0.88171 1.22421 0.97977 0.94727 1.00790 1.23120 1.01882 0.97371 0.96219 1.22042 0.85955 0.87693 0.80419 1.93007 1.66939 1.68300 1.90237 1.92998 1.94003 1.87271 1.44326 1.23887 0.94463 1.03498 0.99489 1.68604 1.07568 1.24865 1.21462 0.91399 0.87428 0.84398 0.85341 0.73776 0.73976 0.88018 0.87905 0.87111 0.86442 0.87058 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -36.70 8.99 21.84 0.20 -36.50 16 2 C 0.02 0.80 5.50 85.29 0.47 1.27 16 3 Si 0.98 38.03 29.56 68.60 2.03 40.06 16 4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 7 C -0.46 -25.09 9.14 23.47 0.21 -24.87 16 8 H 0.09 4.41 7.85 -2.91 -0.02 4.38 16 9 C 0.24 13.20 6.55 40.21 0.26 13.46 16 10 C -0.32 -15.81 9.83 22.87 0.22 -15.59 16 11 C -0.03 -1.44 10.15 22.40 0.23 -1.21 16 12 C -0.34 -14.72 9.95 22.72 0.23 -14.49 16 13 C 0.35 16.69 7.42 133.28 0.99 17.68 16 14 N -0.63 -25.49 5.37 -309.72 -1.66 -27.15 16 15 C 0.46 18.25 7.84 87.25 0.68 18.94 16 16 O -0.42 -19.38 12.24 -3.26 -0.04 -19.42 16 17 C 0.52 16.38 7.89 87.25 0.69 17.07 16 18 O -0.54 -18.17 16.13 -3.28 -0.05 -18.22 16 19 N -0.68 -15.96 5.15 -438.86 -2.26 -18.22 16 20 C 0.14 2.54 3.22 46.07 0.15 2.69 16 21 H 0.10 2.07 7.56 -2.39 -0.02 2.05 16 22 C -0.12 -1.33 6.53 31.32 0.20 -1.13 16 23 C -0.15 -1.54 6.41 31.32 0.20 -1.34 16 24 C 0.28 4.76 2.50 31.70 0.08 4.84 16 25 F -0.20 -4.27 17.17 44.97 0.77 -3.49 16 26 F -0.21 -4.18 17.17 44.97 0.77 -3.41 16 27 C -0.17 -3.25 6.16 31.92 0.20 -3.05 16 28 N -0.51 -27.95 5.73 -186.43 -1.07 -29.02 16 29 H 0.28 13.32 8.29 -92.71 -0.77 12.55 16 30 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.14 4.72 8.06 -2.91 -0.02 4.69 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 33 H 0.42 14.31 8.18 -92.71 -0.76 13.56 16 34 H 0.42 9.29 7.84 -92.71 -0.73 8.56 16 35 H 0.10 0.92 7.73 -2.39 -0.02 0.90 16 36 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.11 0.88 8.12 -2.39 -0.02 0.86 16 38 H 0.12 0.91 8.11 -2.39 -0.02 0.89 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.72 350.19 3.14 -66.58 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.36 Total: 34.53 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 4.82 Total: 14.26 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -4.80 Total: -110.89 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.09 Total: -37.64 kcal Atomic # 9 Polarization: -8.45 SS G_CDS: 1.54 Total: -6.90 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -69.72 3.14 -66.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334097652.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.858 kcal (2) G-P(sol) polarization free energy of solvation -69.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds