Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46954 * 240.00129 * 3 2 1 5 5 H 1.48506 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47350 * 119.99925 * 3 2 1 7 7 C 1.40031 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.41339 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.40623 * 119.78476 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.13415 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.67292 * 0.02562 * 11 10 9 13 13 C 1.39673 * 119.49097 * 359.97438 * 12 11 10 14 14 N 1.39119 * 119.57592 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99879 * 174.66304 * 14 13 12 16 16 O 1.21360 * 119.99885 * 5.14543 * 15 14 13 17 17 C 1.49368 * 120.00119 * 185.14884 * 15 14 13 18 18 O 1.21357 * 119.99383 * 0.02562 * 17 15 14 19 19 N 1.34772 * 120.00133 * 179.97438 * 17 15 14 20 20 C 1.46495 * 119.99912 * 179.97438 * 19 17 15 21 21 H 1.08996 * 110.43964 * 325.70379 * 20 19 17 22 22 C 1.54269 * 110.48873 * 203.16219 * 20 19 17 23 23 C 1.53871 * 106.60102 * 217.71442 * 22 20 19 24 24 C 1.54268 * 106.59810 * 0.02562 * 23 22 20 25 25 F 1.39901 * 110.48834 * 142.28788 * 24 23 22 26 26 F 1.39908 * 110.48291 * 264.79637 * 24 23 22 27 27 C 1.54893 * 110.48718 * 88.24621 * 20 19 17 28 28 N 1.31957 * 120.84245 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00116 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.43593 * 0.25693 * 10 9 7 31 31 H 1.08007 * 120.66357 * 180.02562 * 11 10 9 32 32 H 1.07997 * 120.25809 * 179.97438 * 12 11 10 33 33 H 0.96996 * 119.99614 * 354.65767 * 14 13 12 34 34 H 0.97005 * 120.00008 * 0.02562 * 19 17 15 35 35 H 1.09004 * 110.03001 * 336.99786 * 22 20 19 36 36 H 1.08994 * 110.03200 * 98.42809 * 22 20 19 37 37 H 1.08995 * 110.03526 * 119.28270 * 23 22 20 38 38 H 1.08994 * 110.03262 * 240.71609 * 23 22 20 39 39 H 1.08997 * 110.75349 * 274.93968 * 27 20 19 40 40 H 1.08999 * 110.75260 * 38.30312 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0086 -3.6519 0.0005 11 6 1.3035 -4.8418 0.0011 12 6 -0.0826 -4.7939 0.0011 13 6 -0.7278 -3.5552 0.0010 14 7 -2.1181 -3.5051 0.0005 15 6 -2.7498 -2.3195 0.1090 16 8 -2.1091 -1.2888 0.1132 17 6 -4.2383 -2.2741 0.2243 18 8 -4.8788 -3.3049 0.2206 19 7 -4.8699 -1.0885 0.3333 20 6 -6.3298 -1.0440 0.4458 21 1 -6.7813 -1.8450 -0.1396 22 6 -6.8652 0.3280 -0.0136 23 6 -8.0331 0.6805 0.9242 24 6 -8.1663 -0.4892 1.9211 25 9 -8.4926 -0.0120 3.1951 26 9 -9.1307 -1.4015 1.4795 27 6 -6.7627 -1.1467 1.9294 28 7 -0.0355 -2.4318 0.0016 29 1 -0.4850 0.8400 0.0004 30 1 3.0886 -3.6561 0.0047 31 1 1.8220 -5.7893 0.0015 32 1 -0.6586 -5.7074 0.0011 33 1 -2.6328 -4.3235 -0.0781 34 1 -4.3578 -0.2647 0.3366 35 1 -6.0811 1.0808 0.0673 36 1 -7.2186 0.2653 -1.0427 37 1 -7.8158 1.6044 1.4602 38 1 -8.9532 0.7889 0.3502 39 1 -6.8235 -2.1889 2.2428 40 1 -6.0801 -0.5887 2.5704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334097653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = -113.833300 kcal Electronic energy + Delta-G solvation = -29035.928636 eV Core-core repulsion = 24487.162058 eV Total energy + Delta-G solvation = -4548.766578 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.14073 -47.26917 -40.41164 -38.93908 -37.69343 -37.09393 -34.52503 -33.53418 -32.97623 -30.42100 -29.38243 -29.21297 -27.77376 -25.78871 -24.40541 -21.97185 -21.48811 -21.30863 -20.94648 -19.69937 -18.40782 -17.93762 -17.40172 -17.00176 -16.51828 -16.23827 -15.88209 -15.38355 -15.06199 -14.84680 -14.73577 -14.51737 -14.40968 -13.79666 -13.72989 -13.59755 -13.51874 -13.41914 -12.92853 -12.75958 -12.61106 -12.10190 -12.05745 -12.01792 -11.83091 -11.29349 -11.21528 -11.11988 -11.05207 -11.01072 -10.73958 -10.55257 -10.03281 -9.84196 -9.34831 -9.13175 -9.07803 -8.07252 -7.38043 -7.10494 -6.26100 -4.48999 1.80329 2.58177 2.78361 3.04409 3.09523 3.12531 3.21002 3.37392 3.52073 3.76658 3.93747 3.96441 3.98597 4.16511 4.55174 4.71614 4.76677 4.82227 4.85019 4.89638 4.97597 5.27274 5.38417 5.55361 5.64035 5.66122 5.92971 6.03083 6.20452 6.39341 6.53442 6.70770 6.76086 7.10698 7.16055 7.43223 7.48483 7.72740 7.82004 7.97479 8.10169 8.32141 8.57663 8.88032 8.97076 10.10201 10.37425 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002998 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.958842 B = 9338.854181 C =10934.669337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.664 5.664 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.271 3.729 10 C -0.300 4.300 11 C -0.036 4.036 12 C -0.348 4.348 13 C 0.368 3.632 14 N -0.638 5.638 15 C 0.467 3.533 16 O -0.386 6.386 17 C 0.511 3.489 18 O -0.529 6.529 19 N -0.699 5.699 20 C 0.143 3.857 21 H 0.108 0.892 22 C -0.129 4.129 23 C -0.157 4.157 24 C 0.281 3.719 25 F -0.196 7.196 26 F -0.193 7.193 27 C -0.173 4.173 28 N -0.475 5.475 29 H 0.272 0.728 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.412 0.588 34 H 0.416 0.584 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.722 3.145 0.825 15.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.283 5.283 2 C -0.169 4.169 3 Si 0.723 3.277 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.454 4.454 8 H 0.101 0.899 9 C 0.146 3.854 10 C -0.323 4.323 11 C -0.060 4.060 12 C -0.374 4.374 13 C 0.130 3.870 14 N -0.286 5.286 15 C 0.243 3.757 16 O -0.248 6.248 17 C 0.293 3.707 18 O -0.405 6.405 19 N -0.353 5.353 20 C 0.038 3.962 21 H 0.126 0.874 22 C -0.167 4.167 23 C -0.196 4.196 24 C 0.244 3.756 25 F -0.177 7.177 26 F -0.174 7.174 27 C -0.213 4.213 28 N -0.194 5.194 29 H 0.084 0.916 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.247 0.753 34 H 0.254 0.746 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.389 4.194 0.855 15.974 hybrid contribution 0.541 -0.299 0.149 0.636 sum -14.848 3.895 1.003 15.383 Atomic orbital electron populations 1.70294 1.05950 1.27442 1.24605 1.26154 0.95131 1.00656 0.94909 0.86537 0.80209 0.81200 0.79747 1.19137 1.20374 1.19135 1.19562 0.94132 0.89321 1.42417 0.89868 1.18356 0.86963 0.92052 0.88005 1.21659 0.98701 0.93462 1.18454 1.20592 0.93076 0.96696 0.95662 1.20516 0.94837 0.94947 1.27111 1.18531 0.82591 0.91251 0.94648 1.42984 1.05327 1.09107 1.71221 1.20063 0.87030 0.86155 0.82459 1.91219 1.64497 1.30704 1.38411 1.20927 0.89853 0.83780 0.76181 1.90712 1.68174 1.33115 1.48467 1.45741 1.06513 1.09620 1.73470 1.21712 0.80745 0.99017 0.94740 0.87436 1.22404 0.97682 0.96452 1.00178 1.23102 1.01317 0.97710 0.97456 1.21832 0.86778 0.87687 0.79324 1.93015 1.93950 1.88716 1.42039 1.93029 1.66346 1.68813 1.89213 1.23934 0.93679 1.04069 0.99584 1.68631 1.07297 1.23150 1.20342 0.91646 0.88348 0.88330 0.88700 0.75282 0.74591 0.89299 0.89365 0.88056 0.88628 0.88187 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -17.15 8.99 55.55 0.50 -16.65 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.41 16 3 Si 0.90 18.28 29.56 -169.99 -5.02 13.26 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 7 C -0.42 -11.18 9.14 -37.73 -0.34 -11.53 16 8 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 9 C 0.27 7.36 6.55 -85.00 -0.56 6.80 16 10 C -0.30 -7.30 9.83 -38.66 -0.38 -7.68 16 11 C -0.04 -0.80 10.15 -39.39 -0.40 -1.20 16 12 C -0.35 -7.70 9.96 -38.88 -0.39 -8.09 16 13 C 0.37 8.79 7.42 -155.08 -1.15 7.63 16 14 N -0.64 -12.82 5.37 -11.83 -0.06 -12.88 16 15 C 0.47 9.15 7.84 -11.63 -0.09 9.06 16 16 O -0.39 -8.74 12.24 5.49 0.07 -8.67 16 17 C 0.51 8.11 7.89 -11.63 -0.09 8.01 16 18 O -0.53 -9.00 16.16 5.49 0.09 -8.91 16 19 N -0.70 -8.53 5.16 -52.66 -0.27 -8.80 16 20 C 0.14 1.41 3.18 -66.27 -0.21 1.20 16 21 H 0.11 1.17 7.61 -51.93 -0.40 0.77 16 22 C -0.13 -0.88 6.53 -25.61 -0.17 -1.05 16 23 C -0.16 -1.04 6.42 -25.61 -0.16 -1.21 16 24 C 0.28 2.64 2.49 -25.01 -0.06 2.58 16 25 F -0.20 -2.13 17.17 2.25 0.04 -2.09 16 26 F -0.19 -2.12 17.17 2.25 0.04 -2.09 16 27 C -0.17 -1.70 6.17 -24.68 -0.15 -1.86 16 28 N -0.47 -12.82 5.73 -10.28 -0.06 -12.88 16 29 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 30 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 31 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 32 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 33 H 0.41 7.07 8.18 -40.82 -0.33 6.73 16 34 H 0.42 4.79 7.82 -40.82 -0.32 4.47 16 35 H 0.09 0.54 7.72 -51.93 -0.40 0.14 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 38 H 0.10 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 350.22 15.07 5.28 5.28 Total: -1.00 -31.33 350.22 -8.04 -39.36 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -4.37 Total: 11.00 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -4.26 Total: 4.08 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.11 Total: -51.22 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.16 Total: -17.58 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.08 Total: -4.17 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.33 -8.04 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334097653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.468 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds