Wall clock time and date at job start Tue Mar 31 2020 22:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86799 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46954 * 240.00129 * 3 2 1 5 5 H 1.48506 * 109.47208 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47350 * 119.99925 * 3 2 1 7 7 C 1.40031 * 120.00095 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.41339 * 119.99977 * 0.02562 * 7 2 1 10 10 C 1.40623 * 119.78476 * 179.97438 * 9 7 2 11 11 C 1.38307 * 119.13415 * 179.97438 * 10 9 7 12 12 C 1.38694 * 118.67292 * 0.02562 * 11 10 9 13 13 C 1.39673 * 119.49097 * 359.97438 * 12 11 10 14 14 N 1.39119 * 119.57592 * 179.97438 * 13 12 11 15 15 C 1.34771 * 119.99879 * 174.66304 * 14 13 12 16 16 O 1.21360 * 119.99885 * 5.14543 * 15 14 13 17 17 C 1.49368 * 120.00119 * 185.14884 * 15 14 13 18 18 O 1.21357 * 119.99383 * 0.02562 * 17 15 14 19 19 N 1.34772 * 120.00133 * 179.97438 * 17 15 14 20 20 C 1.46495 * 119.99912 * 179.97438 * 19 17 15 21 21 H 1.08996 * 110.43964 * 325.70379 * 20 19 17 22 22 C 1.54269 * 110.48873 * 203.16219 * 20 19 17 23 23 C 1.53871 * 106.60102 * 217.71442 * 22 20 19 24 24 C 1.54268 * 106.59810 * 0.02562 * 23 22 20 25 25 F 1.39901 * 110.48834 * 142.28788 * 24 23 22 26 26 F 1.39908 * 110.48291 * 264.79637 * 24 23 22 27 27 C 1.54893 * 110.48718 * 88.24621 * 20 19 17 28 28 N 1.31957 * 120.84245 * 359.97438 * 13 12 11 29 29 H 0.97001 * 120.00116 * 359.97438 * 1 2 3 30 30 H 1.08005 * 120.43593 * 0.25693 * 10 9 7 31 31 H 1.08007 * 120.66357 * 180.02562 * 11 10 9 32 32 H 1.07997 * 120.25809 * 179.97438 * 12 11 10 33 33 H 0.96996 * 119.99614 * 354.65767 * 14 13 12 34 34 H 0.97005 * 120.00008 * 0.02562 * 19 17 15 35 35 H 1.09004 * 110.03001 * 336.99786 * 22 20 19 36 36 H 1.08994 * 110.03200 * 98.42809 * 22 20 19 37 37 H 1.08995 * 110.03526 * 119.28270 * 23 22 20 38 38 H 1.08994 * 110.03262 * 240.71609 * 23 22 20 39 39 H 1.08997 * 110.75349 * 274.93968 * 27 20 19 40 40 H 1.08999 * 110.75260 * 38.30312 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0875 -1.2126 0.0001 9 6 1.3009 -2.4367 0.0005 10 6 2.0086 -3.6519 0.0005 11 6 1.3035 -4.8418 0.0011 12 6 -0.0826 -4.7939 0.0011 13 6 -0.7278 -3.5552 0.0010 14 7 -2.1181 -3.5051 0.0005 15 6 -2.7498 -2.3195 0.1090 16 8 -2.1091 -1.2888 0.1132 17 6 -4.2383 -2.2741 0.2243 18 8 -4.8788 -3.3049 0.2206 19 7 -4.8699 -1.0885 0.3333 20 6 -6.3298 -1.0440 0.4458 21 1 -6.7813 -1.8450 -0.1396 22 6 -6.8652 0.3280 -0.0136 23 6 -8.0331 0.6805 0.9242 24 6 -8.1663 -0.4892 1.9211 25 9 -8.4926 -0.0120 3.1951 26 9 -9.1307 -1.4015 1.4795 27 6 -6.7627 -1.1467 1.9294 28 7 -0.0355 -2.4318 0.0016 29 1 -0.4850 0.8400 0.0004 30 1 3.0886 -3.6561 0.0047 31 1 1.8220 -5.7893 0.0015 32 1 -0.6586 -5.7074 0.0011 33 1 -2.6328 -4.3235 -0.0781 34 1 -4.3578 -0.2647 0.3366 35 1 -6.0811 1.0808 0.0673 36 1 -7.2186 0.2653 -1.0427 37 1 -7.8158 1.6044 1.4602 38 1 -8.9532 0.7889 0.3502 39 1 -6.8235 -2.1889 2.2428 40 1 -6.0801 -0.5887 2.5704 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334097653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:56 Heat of formation + Delta-G solvation = -133.480368 kcal Electronic energy + Delta-G solvation = -29036.780597 eV Core-core repulsion = 24487.162058 eV Total energy + Delta-G solvation = -4549.618539 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.93862 -48.08148 -41.78506 -40.43687 -39.11322 -38.31051 -36.16403 -35.04039 -34.35985 -32.26356 -31.08231 -30.02573 -28.66916 -27.58175 -25.81987 -23.57905 -22.97425 -22.16557 -21.96634 -21.13255 -19.98509 -18.92450 -18.76698 -18.15926 -17.79602 -17.46983 -16.94618 -16.63232 -16.43896 -16.28853 -16.18352 -15.74884 -15.52189 -15.20812 -15.06672 -14.94536 -14.62941 -14.41869 -14.28634 -13.92849 -13.76946 -13.52060 -13.42287 -12.85918 -12.74026 -12.72119 -12.62797 -12.57369 -12.50295 -12.30554 -11.82340 -11.80959 -11.76282 -11.58659 -10.90480 -10.62949 -10.39478 -9.92880 -9.20051 -8.91767 -8.07938 -6.41854 0.35451 1.03354 1.27190 1.32759 1.44526 1.54538 1.57621 2.29175 2.35577 2.51547 2.72136 2.88530 2.98873 3.13236 3.39518 3.51951 3.87119 4.01085 4.02201 4.09730 4.18128 4.25619 4.33113 4.59597 4.67740 4.81026 4.82231 4.85725 4.90859 4.94557 4.99261 5.07194 5.24247 5.27797 5.63376 5.71151 5.90105 5.97500 6.15417 6.29409 6.54744 6.71159 6.83419 7.04671 7.28930 8.25191 8.56675 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002998 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.958842 B = 9338.854181 C =10934.669337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.693 5.693 2 C 0.016 3.984 3 Si 0.976 3.024 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.086 0.914 9 C 0.237 3.763 10 C -0.322 4.322 11 C -0.034 4.034 12 C -0.344 4.344 13 C 0.348 3.652 14 N -0.633 5.633 15 C 0.460 3.540 16 O -0.418 6.418 17 C 0.522 3.478 18 O -0.542 6.542 19 N -0.680 5.680 20 C 0.140 3.860 21 H 0.100 0.900 22 C -0.121 4.121 23 C -0.148 4.148 24 C 0.275 3.725 25 F -0.205 7.205 26 F -0.204 7.204 27 C -0.174 4.174 28 N -0.505 5.505 29 H 0.275 0.725 30 H 0.108 0.892 31 H 0.138 0.862 32 H 0.129 0.871 33 H 0.424 0.576 34 H 0.422 0.578 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.604 3.849 0.560 16.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.312 5.312 2 C -0.210 4.210 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.492 4.492 8 H 0.104 0.896 9 C 0.112 3.888 10 C -0.345 4.345 11 C -0.058 4.058 12 C -0.369 4.369 13 C 0.110 3.890 14 N -0.283 5.283 15 C 0.238 3.762 16 O -0.282 6.282 17 C 0.302 3.698 18 O -0.419 6.419 19 N -0.334 5.334 20 C 0.035 3.965 21 H 0.118 0.882 22 C -0.159 4.159 23 C -0.186 4.186 24 C 0.239 3.761 25 F -0.186 7.186 26 F -0.185 7.185 27 C -0.213 4.213 28 N -0.225 5.225 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.262 0.738 34 H 0.260 0.740 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.317 4.883 0.592 17.042 hybrid contribution 0.743 -0.671 0.259 1.034 sum -15.574 4.213 0.851 16.156 Atomic orbital electron populations 1.70433 1.07306 1.28444 1.25054 1.26956 0.96057 1.03786 0.94192 0.85371 0.78749 0.76563 0.79626 1.18813 1.19318 1.18861 1.19896 0.94557 0.90399 1.44397 0.89552 1.18847 0.87706 0.93462 0.88826 1.21851 0.99394 0.93718 1.19569 1.21043 0.93295 0.97577 0.93860 1.20958 0.95332 0.95607 1.25031 1.18982 0.84053 0.91502 0.94480 1.42988 1.04222 1.10162 1.70950 1.20720 0.88740 0.85494 0.81226 1.91212 1.65800 1.31628 1.39604 1.20158 0.87902 0.84781 0.76921 1.90713 1.67732 1.33719 1.49764 1.45711 1.07692 1.08490 1.71494 1.21905 0.78731 1.00975 0.94850 0.88244 1.22418 0.97999 0.94496 1.00971 1.23120 1.01881 0.96849 0.96725 1.22080 0.85894 0.88508 0.79644 1.92997 1.93964 1.88768 1.42903 1.93008 1.66742 1.69481 1.89279 1.23892 0.94479 1.03387 0.99550 1.68594 1.07567 1.24876 1.21463 0.91372 0.87423 0.84403 0.85347 0.73777 0.73978 0.87997 0.87841 0.86448 0.87071 0.89752 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -36.70 8.99 21.84 0.20 -36.51 16 2 C 0.02 0.81 5.50 85.29 0.47 1.28 16 3 Si 0.98 38.01 29.56 68.60 2.03 40.03 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.46 -25.14 9.14 23.47 0.21 -24.92 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.24 13.21 6.55 40.21 0.26 13.48 16 10 C -0.32 -15.83 9.83 22.87 0.22 -15.61 16 11 C -0.03 -1.44 10.15 22.40 0.23 -1.22 16 12 C -0.34 -14.74 9.96 22.73 0.23 -14.51 16 13 C 0.35 16.70 7.42 133.29 0.99 17.69 16 14 N -0.63 -25.49 5.37 -309.72 -1.66 -27.16 16 15 C 0.46 18.26 7.84 87.24 0.68 18.94 16 16 O -0.42 -19.39 12.24 -3.28 -0.04 -19.43 16 17 C 0.52 16.38 7.89 87.24 0.69 17.07 16 18 O -0.54 -18.16 16.16 -3.27 -0.05 -18.21 16 19 N -0.68 -15.97 5.16 -438.87 -2.27 -18.23 16 20 C 0.14 2.55 3.18 46.07 0.15 2.69 16 21 H 0.10 2.04 7.61 -2.39 -0.02 2.02 16 22 C -0.12 -1.32 6.53 31.32 0.20 -1.12 16 23 C -0.15 -1.54 6.42 31.32 0.20 -1.34 16 24 C 0.28 4.78 2.49 31.71 0.08 4.86 16 25 F -0.21 -4.20 17.17 44.97 0.77 -3.43 16 26 F -0.20 -4.28 17.17 44.97 0.77 -3.51 16 27 C -0.17 -3.26 6.17 31.92 0.20 -3.07 16 28 N -0.51 -27.96 5.73 -186.43 -1.07 -29.03 16 29 H 0.28 13.36 8.29 -92.71 -0.77 12.59 16 30 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 32 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 33 H 0.42 14.32 8.18 -92.71 -0.76 13.56 16 34 H 0.42 9.29 7.82 -92.70 -0.72 8.57 16 35 H 0.10 0.91 7.72 -2.38 -0.02 0.89 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 0.91 8.11 -2.39 -0.02 0.89 16 38 H 0.11 0.88 8.12 -2.39 -0.02 0.86 16 39 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.73 350.22 3.14 -66.60 By element: Atomic # 1 Polarization: 35.01 SS G_CDS: -0.36 Total: 34.65 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: 4.82 Total: 14.22 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -4.80 Total: -110.92 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.09 Total: -37.64 kcal Atomic # 9 Polarization: -8.48 SS G_CDS: 1.54 Total: -6.94 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.03 kcal Total: -69.73 3.14 -66.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334097653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.884 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds