Wall clock time and date at job start Tue Mar 31 2020 23:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87607 * 2 1 4 4 C 1.54325 * 109.88027 * 238.98546 * 2 1 3 5 5 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 6 6 N 1.46501 * 110.87209 * 99.95762 * 4 2 1 7 7 C 1.34781 * 119.99799 * 200.06518 * 6 4 2 8 8 O 1.21614 * 119.99974 * 359.97438 * 7 6 4 9 9 C 1.47233 * 119.99953 * 179.97438 * 7 6 4 10 10 C 1.37003 * 127.18913 * 180.02562 * 9 7 6 11 11 N 1.33324 * 106.37333 * 179.97438 * 10 9 7 12 12 N 1.28509 * 109.43580 * 359.97438 * 11 10 9 13 13 N 1.28716 * 110.64013 * 359.71838 * 12 11 10 14 14 H 0.96999 * 126.03591 * 180.29673 * 13 12 11 15 15 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 16 16 C 1.54918 * 101.58155 * 35.49936 * 15 4 2 17 17 N 1.47015 * 109.88603 * 121.17695 * 2 1 3 18 18 C 1.34778 * 125.64845 * 298.40418 * 17 2 1 19 19 O 1.21282 * 119.99788 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00112 * 179.97438 * 18 17 2 21 21 S 1.80997 * 109.46955 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99866 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00319 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99738 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00300 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99723 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47285 * 89.99418 * 26 24 22 28 28 H 1.48500 * 109.46932 * 209.99924 * 26 24 22 29 29 H 1.48499 * 109.46798 * 329.99627 * 26 24 22 30 30 H 1.08997 * 109.46797 * 181.01783 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.01216 * 1 2 3 32 32 H 1.08997 * 109.47254 * 61.01388 * 1 2 3 33 33 H 0.96998 * 120.00513 * 20.05920 * 6 4 2 34 34 H 1.07998 * 126.81504 * 0.02562 * 10 9 7 35 35 H 1.09001 * 111.00846 * 153.57645 * 15 4 2 36 36 H 1.09000 * 111.00346 * 277.43176 * 15 4 2 37 37 H 1.08999 * 110.35942 * 81.82689 * 16 15 4 38 38 H 1.08996 * 110.36556 * 204.15522 * 16 15 4 39 39 H 1.08999 * 109.47065 * 299.99680 * 20 18 17 40 40 H 1.09003 * 109.46764 * 60.00206 * 20 18 17 41 41 H 0.96994 * 120.00273 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4549 0.1963 -2.2902 7 6 2.5528 -0.2172 -3.5693 8 8 2.3095 -1.3741 -3.8546 9 6 2.9543 0.7317 -4.6210 10 6 3.0995 0.4727 -5.9585 11 7 3.4738 1.6201 -6.5250 12 7 3.5596 2.5334 -5.6249 13 7 3.2539 2.0600 -4.4677 14 1 3.2405 2.5555 -3.6339 15 6 3.2876 -1.5133 -0.6946 16 6 2.8146 -1.8804 0.7341 17 7 2.0300 -0.7157 1.1828 18 6 1.8073 -0.3656 2.4651 19 8 1.1426 0.6166 2.7188 20 6 2.3833 -1.1952 3.5837 21 16 1.9123 -0.4726 5.1749 22 6 2.6964 -1.6081 6.2706 23 1 3.2569 -2.4418 5.8741 24 6 2.5928 -1.4318 7.6435 25 7 1.9093 -0.4160 8.1269 26 14 3.4247 -2.6351 8.8051 27 1 4.8030 -2.1671 9.0991 28 1 2.6500 -2.7187 10.0693 29 1 3.4823 -3.9764 8.1703 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3633 0.5295 0.8808 32 1 -0.3633 0.4980 -0.8989 33 1 2.6492 1.1189 -2.0626 34 1 2.9411 -0.4729 -6.4555 35 1 3.4852 -2.4093 -1.2831 36 1 4.1653 -0.8679 -0.6617 37 1 2.1886 -2.7724 0.7089 38 1 3.6717 -2.0357 1.3893 39 1 1.9972 -2.2124 3.5176 40 1 3.4700 -1.2128 3.5005 41 1 1.8366 -0.2930 9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337899604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:05 Heat of formation + Delta-G solvation = 31.571537 kcal Electronic energy + Delta-G solvation = -26127.249696 eV Core-core repulsion = 22170.921483 eV Total energy + Delta-G solvation = -3956.328213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.92877 -40.81208 -39.59338 -37.52780 -35.02661 -33.96113 -32.48843 -32.21803 -31.82838 -30.95464 -28.67831 -26.32531 -25.54806 -24.65705 -23.45231 -23.07352 -21.90031 -21.34349 -20.05823 -18.99270 -17.81321 -17.32729 -17.30943 -16.94507 -16.41237 -15.99433 -15.32375 -15.14041 -14.91978 -14.85585 -14.78009 -14.16437 -14.04074 -13.99839 -13.15683 -13.01509 -12.78040 -12.71813 -12.62070 -12.35956 -11.94518 -11.86531 -11.86285 -11.61880 -11.35066 -11.15867 -11.11196 -11.07397 -10.85981 -10.80739 -10.15910 -9.88190 -9.78251 -9.49889 -9.12300 -8.72177 -8.31487 -6.57532 -6.27570 -3.98886 0.27347 1.72565 1.80702 2.15001 2.44127 2.81352 2.91763 3.18139 3.21035 3.26051 3.50248 3.70367 3.87271 4.08944 4.13678 4.15689 4.38291 4.56790 4.56875 4.75880 4.82751 4.90536 5.05477 5.07845 5.25692 5.33270 5.40261 5.40577 5.51566 5.52645 5.56795 5.68496 5.80943 5.85994 5.95466 6.03757 6.08312 6.31270 6.60988 7.32149 7.47986 7.54070 7.67333 8.29288 8.40646 9.17906 10.79814 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029468 B = 0.001959 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.969051 B =14286.479095 C =14501.047735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.135 3.865 3 H 0.077 0.923 4 C 0.138 3.862 5 H 0.113 0.887 6 N -0.715 5.715 7 C 0.600 3.400 8 O -0.507 6.507 9 C -0.069 4.069 10 C 0.037 3.963 11 N -0.269 5.269 12 N -0.042 5.042 13 N -0.374 5.374 14 H 0.452 0.548 15 C -0.144 4.144 16 C 0.101 3.899 17 N -0.622 5.622 18 C 0.552 3.448 19 O -0.511 6.511 20 C -0.148 4.148 21 S -0.060 6.060 22 C -0.536 4.536 23 H 0.073 0.927 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.277 1.277 28 H -0.282 1.282 29 H -0.272 1.272 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.206 0.794 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 0.270 -24.723 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.095 0.905 4 C 0.033 3.967 5 H 0.131 0.869 6 N -0.366 5.366 7 C 0.384 3.616 8 O -0.379 6.379 9 C -0.203 4.203 10 C -0.123 4.123 11 N -0.134 5.134 12 N -0.024 5.024 13 N -0.101 5.101 14 H 0.298 0.702 15 C -0.183 4.183 16 C -0.022 4.022 17 N -0.360 5.360 18 C 0.341 3.659 19 O -0.384 6.384 20 C -0.298 4.298 21 S 0.167 5.833 22 C -0.684 4.684 23 H 0.091 0.909 24 C -0.136 4.136 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.203 1.203 28 H -0.207 1.207 29 H -0.197 1.197 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.223 0.777 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.825 2.151 -25.179 25.336 hybrid contribution 1.138 -2.035 1.758 2.920 sum 2.963 0.116 -23.421 23.608 Atomic orbital electron populations 1.22168 0.93799 1.02988 1.03292 1.21517 0.95335 0.96079 0.84058 0.90486 1.22184 0.97575 0.90849 0.86093 0.86870 1.45820 1.70031 1.14007 1.06778 1.16688 0.77580 0.86447 0.80919 1.90901 1.48681 1.16840 1.81492 1.22345 1.14047 0.85743 0.98169 1.23974 0.99397 0.99344 0.89548 1.75052 1.16518 0.98245 1.23575 1.78275 1.15298 1.21807 0.87042 1.45642 1.44951 1.08031 1.11516 0.70151 1.23233 0.97711 1.01685 0.95691 1.22311 0.96024 0.89229 0.94669 1.48524 1.54189 1.28816 1.04519 1.20059 0.79689 0.85029 0.81167 1.90703 1.38357 1.26969 1.82407 1.23520 1.03682 1.02689 0.99906 1.85395 1.69684 1.37734 0.90503 1.22849 1.38355 1.14133 0.93069 0.90895 1.24996 0.95195 0.96010 0.97361 1.70008 1.38374 1.28179 1.13667 0.86163 0.79198 0.80528 0.79593 1.20251 1.20715 1.19664 0.92010 0.90199 0.91947 0.76785 0.77721 0.88893 0.90052 0.90766 0.89644 0.89154 0.89257 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.09 37.16 0.34 -1.33 16 2 C 0.13 1.28 3.21 -66.96 -0.22 1.07 16 3 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 4 C 0.14 0.98 2.75 -66.09 -0.18 0.80 16 5 H 0.11 0.89 7.40 -51.93 -0.38 0.51 16 6 N -0.71 -3.75 5.20 -53.17 -0.28 -4.02 16 7 C 0.60 4.20 7.81 -12.60 -0.10 4.10 16 8 O -0.51 -5.17 16.65 5.27 0.09 -5.09 16 9 C -0.07 -0.43 7.17 -82.34 -0.59 -1.02 16 10 C 0.04 0.27 11.87 -17.35 -0.21 0.06 16 11 N -0.27 -2.46 12.35 30.47 0.38 -2.09 16 12 N -0.04 -0.34 13.35 60.35 0.81 0.47 16 13 N -0.37 -1.82 6.97 33.31 0.23 -1.58 16 14 H 0.45 0.48 8.32 -190.33 -1.58 -1.10 16 15 C -0.14 -1.01 6.77 -24.58 -0.17 -1.17 16 16 C 0.10 0.91 6.69 -2.52 -0.02 0.90 16 17 N -0.62 -7.64 3.06 -163.02 -0.50 -8.14 16 18 C 0.55 9.62 7.66 -10.98 -0.08 9.54 16 19 O -0.51 -10.75 14.91 5.56 0.08 -10.66 16 20 C -0.15 -2.83 5.16 36.01 0.19 -2.64 16 21 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 22 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 23 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 24 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 25 N -0.87 -25.61 13.22 55.49 0.73 -24.87 16 26 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.07 6.90 -51.93 -0.36 0.71 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.40 1.07 7.59 -40.82 -0.31 0.76 16 34 H 0.21 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.76 7.48 -51.93 -0.39 0.37 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 40 H 0.09 1.58 7.85 -51.91 -0.41 1.17 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -36.72 366.58 -7.34 -44.06 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -6.33 Total: -3.45 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.84 Total: -2.30 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 1.37 Total: -40.23 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.17 Total: -15.75 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.72 -7.34 -44.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337899604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.636 kcal (2) G-P(sol) polarization free energy of solvation -36.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds