Wall clock time and date at job start Tue Mar 31 2020 23:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.87607 * 2 1 4 4 C 1.54325 * 109.88027 * 238.98546 * 2 1 3 5 5 H 1.08993 * 110.72326 * 336.75073 * 4 2 1 6 6 N 1.46501 * 110.87209 * 99.95762 * 4 2 1 7 7 C 1.34781 * 119.99799 * 200.06518 * 6 4 2 8 8 O 1.21614 * 119.99974 * 359.97438 * 7 6 4 9 9 C 1.47233 * 119.99953 * 179.97438 * 7 6 4 10 10 C 1.37003 * 127.18913 * 180.02562 * 9 7 6 11 11 N 1.33324 * 106.37333 * 179.97438 * 10 9 7 12 12 N 1.28509 * 109.43580 * 359.97438 * 11 10 9 13 13 N 1.28716 * 110.64013 * 359.71838 * 12 11 10 14 14 H 0.96999 * 126.03591 * 180.29673 * 13 12 11 15 15 C 1.55157 * 102.94374 * 218.38782 * 4 2 1 16 16 C 1.54918 * 101.58155 * 35.49936 * 15 4 2 17 17 N 1.47015 * 109.88603 * 121.17695 * 2 1 3 18 18 C 1.34778 * 125.64845 * 298.40418 * 17 2 1 19 19 O 1.21282 * 119.99788 * 0.02562 * 18 17 2 20 20 C 1.50703 * 120.00112 * 179.97438 * 18 17 2 21 21 S 1.80997 * 109.46955 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99866 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00319 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99738 * 180.02562 * 22 21 20 25 25 N 1.31627 * 120.00300 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99723 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47285 * 89.99418 * 26 24 22 28 28 H 1.48500 * 109.46932 * 209.99924 * 26 24 22 29 29 H 1.48499 * 109.46798 * 329.99627 * 26 24 22 30 30 H 1.08997 * 109.46797 * 181.01783 * 1 2 3 31 31 H 1.09003 * 109.47122 * 301.01216 * 1 2 3 32 32 H 1.08997 * 109.47254 * 61.01388 * 1 2 3 33 33 H 0.96998 * 120.00513 * 20.05920 * 6 4 2 34 34 H 1.07998 * 126.81504 * 0.02562 * 10 9 7 35 35 H 1.09001 * 111.00846 * 153.57645 * 15 4 2 36 36 H 1.09000 * 111.00346 * 277.43176 * 15 4 2 37 37 H 1.08999 * 110.35942 * 81.82689 * 16 15 4 38 38 H 1.08996 * 110.36556 * 204.15522 * 16 15 4 39 39 H 1.08999 * 109.47065 * 299.99680 * 20 18 17 40 40 H 1.09003 * 109.46764 * 60.00206 * 20 18 17 41 41 H 0.96994 * 120.00273 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4549 0.1963 -2.2902 7 6 2.5528 -0.2172 -3.5693 8 8 2.3095 -1.3741 -3.8546 9 6 2.9543 0.7317 -4.6210 10 6 3.0995 0.4727 -5.9585 11 7 3.4738 1.6201 -6.5250 12 7 3.5596 2.5334 -5.6249 13 7 3.2539 2.0600 -4.4677 14 1 3.2405 2.5555 -3.6339 15 6 3.2876 -1.5133 -0.6946 16 6 2.8146 -1.8804 0.7341 17 7 2.0300 -0.7157 1.1828 18 6 1.8073 -0.3656 2.4651 19 8 1.1426 0.6166 2.7188 20 6 2.3833 -1.1952 3.5837 21 16 1.9123 -0.4726 5.1749 22 6 2.6964 -1.6081 6.2706 23 1 3.2569 -2.4418 5.8741 24 6 2.5928 -1.4318 7.6435 25 7 1.9093 -0.4160 8.1269 26 14 3.4247 -2.6351 8.8051 27 1 4.8030 -2.1671 9.0991 28 1 2.6500 -2.7187 10.0693 29 1 3.4823 -3.9764 8.1703 30 1 -0.3633 -1.0275 0.0183 31 1 -0.3633 0.5295 0.8808 32 1 -0.3633 0.4980 -0.8989 33 1 2.6492 1.1189 -2.0626 34 1 2.9411 -0.4729 -6.4555 35 1 3.4852 -2.4093 -1.2831 36 1 4.1653 -0.8679 -0.6617 37 1 2.1886 -2.7724 0.7089 38 1 3.6717 -2.0357 1.3893 39 1 1.9972 -2.2124 3.5176 40 1 3.4700 -1.2128 3.5005 41 1 1.8366 -0.2930 9.0863 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337899604.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:04 Heat of formation + Delta-G solvation = 2.750106 kcal Electronic energy + Delta-G solvation = -26128.499487 eV Core-core repulsion = 22170.921483 eV Total energy + Delta-G solvation = -3957.578005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.45767 -41.62812 -40.48890 -38.59998 -35.72992 -34.59348 -34.55455 -33.00197 -32.54732 -31.83862 -29.98426 -27.66438 -27.03380 -25.26499 -24.07666 -23.95512 -22.53435 -21.94634 -20.82532 -20.09157 -19.44888 -18.30120 -17.91651 -17.53530 -17.42285 -16.93430 -16.88037 -16.45853 -15.92127 -15.83407 -15.54963 -15.32430 -15.18434 -14.77566 -14.51262 -14.08850 -14.00002 -13.68029 -13.34792 -13.27133 -13.16280 -13.03231 -12.89494 -12.70153 -12.59099 -12.42149 -12.33196 -11.88280 -11.86903 -11.73109 -11.48527 -11.14739 -10.92492 -10.72037 -10.33135 -10.27408 -9.76758 -8.67475 -8.35370 -6.13264 -0.24444 1.15704 1.18660 1.35918 1.42070 1.44228 1.53692 1.56402 1.70744 1.89576 2.13868 2.26929 2.99019 3.11959 3.23366 3.30914 3.47308 3.57525 3.84213 3.87254 3.88870 4.06139 4.10970 4.16821 4.25704 4.26759 4.46039 4.55105 4.64695 4.72359 4.82788 4.92034 4.96518 5.00374 5.18617 5.23597 5.39648 5.41592 5.61817 6.14055 6.19208 6.33360 6.80255 7.06266 7.10625 7.13355 8.73652 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029468 B = 0.001959 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.969051 B =14286.479095 C =14501.047735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.084 0.916 4 C 0.151 3.849 5 H 0.113 0.887 6 N -0.701 5.701 7 C 0.610 3.390 8 O -0.537 6.537 9 C -0.063 4.063 10 C 0.030 3.970 11 N -0.299 5.299 12 N -0.060 5.060 13 N -0.350 5.350 14 H 0.468 0.532 15 C -0.133 4.133 16 C 0.092 3.908 17 N -0.612 5.612 18 C 0.551 3.449 19 O -0.557 6.557 20 C -0.122 4.122 21 S -0.148 6.148 22 C -0.545 4.545 23 H 0.083 0.917 24 C 0.014 3.986 25 N -0.911 5.911 26 Si 0.997 3.003 27 H -0.268 1.268 28 H -0.279 1.279 29 H -0.258 1.258 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.412 0.588 34 H 0.220 0.780 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 -1.244 -26.005 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.102 0.898 4 C 0.045 3.955 5 H 0.131 0.869 6 N -0.353 5.353 7 C 0.394 3.606 8 O -0.411 6.411 9 C -0.198 4.198 10 C -0.130 4.130 11 N -0.163 5.163 12 N -0.042 5.042 13 N -0.081 5.081 14 H 0.318 0.682 15 C -0.172 4.172 16 C -0.031 4.031 17 N -0.348 5.348 18 C 0.340 3.660 19 O -0.435 6.435 20 C -0.273 4.273 21 S 0.079 5.921 22 C -0.693 4.693 23 H 0.101 0.899 24 C -0.191 4.191 25 N -0.547 5.547 26 Si 0.819 3.181 27 H -0.193 1.193 28 H -0.204 1.204 29 H -0.182 1.182 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.250 0.750 34 H 0.236 0.764 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.260 0.658 -26.500 26.708 hybrid contribution 0.682 -1.564 2.033 2.654 sum 3.942 -0.906 -24.468 24.800 Atomic orbital electron populations 1.22113 0.94244 1.02733 1.02763 1.21687 0.95009 0.96630 0.83862 0.89771 1.21954 0.97708 0.90608 0.85206 0.86908 1.45627 1.69237 1.14577 1.05881 1.16599 0.76962 0.85923 0.81097 1.90899 1.50155 1.18110 1.81954 1.22170 1.13971 0.85976 0.97668 1.24317 0.99072 0.99523 0.90097 1.75036 1.17748 0.99019 1.24494 1.78222 1.16129 1.22006 0.87830 1.45613 1.43237 1.07631 1.11608 0.68168 1.23196 0.97595 1.02313 0.94093 1.22631 0.96076 0.88340 0.96014 1.48377 1.53253 1.29586 1.03543 1.19672 0.79520 0.84342 0.82498 1.90691 1.40539 1.28828 1.83417 1.23326 1.04791 1.02907 0.96315 1.85553 1.70845 1.39939 0.95776 1.23191 1.38226 1.14241 0.93662 0.89911 1.26110 0.95746 0.97927 0.99334 1.70172 1.40075 1.30354 1.14101 0.84974 0.78039 0.78233 0.76876 1.19306 1.20405 1.18177 0.92019 0.93789 0.89477 0.75043 0.76351 0.87637 0.89186 0.89484 0.89124 0.87658 0.87438 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.09 71.98 0.65 -2.42 16 2 C 0.13 2.24 3.21 45.34 0.15 2.38 16 3 H 0.08 1.36 7.70 -2.38 -0.02 1.34 16 4 C 0.15 1.67 2.75 46.18 0.13 1.80 16 5 H 0.11 1.41 7.40 -2.39 -0.02 1.39 16 6 N -0.70 -5.09 5.20 -440.37 -2.29 -7.38 16 7 C 0.61 6.84 7.81 86.61 0.68 7.52 16 8 O -0.54 -9.61 16.65 -4.08 -0.07 -9.68 16 9 C -0.06 -0.64 7.17 40.41 0.29 -0.36 16 10 C 0.03 0.39 11.87 84.18 1.00 1.39 16 11 N -0.30 -5.18 12.35 -57.50 -0.71 -5.89 16 12 N -0.06 -0.88 13.35 37.02 0.49 -0.39 16 13 N -0.35 -2.64 6.97 -48.53 -0.34 -2.98 16 14 H 0.47 -0.25 8.32 -219.90 -1.83 -2.08 16 15 C -0.13 -1.39 6.77 31.99 0.22 -1.17 16 16 C 0.09 1.38 6.69 86.86 0.58 1.96 16 17 N -0.61 -13.97 3.06 -788.05 -2.42 -16.38 16 18 C 0.55 19.06 7.66 87.66 0.67 19.74 16 19 O -0.56 -24.08 14.91 -3.04 -0.05 -24.13 16 20 C -0.12 -4.63 5.16 71.24 0.37 -4.26 16 21 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 22 C -0.55 -30.37 9.50 67.96 0.65 -29.72 16 23 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 24 C 0.01 0.76 5.49 84.86 0.47 1.23 16 25 N -0.91 -54.97 13.22 21.65 0.29 -54.68 16 26 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 27 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 28 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 29 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.04 1.19 6.90 -2.39 -0.02 1.17 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.41 0.77 7.59 -92.71 -0.70 0.07 16 34 H 0.22 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.33 7.48 -2.39 -0.02 1.31 16 39 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 40 H 0.11 3.65 7.85 -2.39 -0.02 3.63 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -82.63 366.58 0.18 -82.44 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -1.43 Total: 5.43 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.84 Total: -1.90 kcal Atomic # 7 Polarization: -82.73 SS G_CDS: -4.97 Total: -87.70 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.11 Total: -33.81 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -82.63 0.18 -82.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337899604.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.193 kcal (2) G-P(sol) polarization free energy of solvation -82.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds