Wall clock time and date at job start Tue Mar 31 2020 23:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.87209 * 2 1 4 4 C 1.54321 * 109.88370 * 121.17274 * 2 1 3 5 5 H 1.09007 * 110.71794 * 23.25039 * 4 2 1 6 6 N 1.46496 * 110.72315 * 259.97886 * 4 2 1 7 7 C 1.34769 * 120.00324 * 154.99740 * 6 4 2 8 8 O 1.21625 * 120.00035 * 0.02562 * 7 6 4 9 9 C 1.47234 * 120.00346 * 179.97438 * 7 6 4 10 10 C 1.37008 * 127.19072 * 179.68731 * 9 7 6 11 11 N 1.33320 * 106.37135 * 179.90357 * 10 9 7 12 12 N 1.28519 * 109.43796 * 0.37228 * 11 10 9 13 13 N 1.28706 * 110.63849 * 359.75825 * 12 11 10 14 14 H 0.97001 * 126.03481 * 180.02562 * 13 12 11 15 15 C 1.55160 * 102.94080 * 141.61069 * 4 2 1 16 16 C 1.54906 * 101.58189 * 324.50123 * 15 4 2 17 17 N 1.47022 * 109.88102 * 238.98415 * 2 1 3 18 18 C 1.34770 * 125.65017 * 61.68195 * 17 2 1 19 19 O 1.21283 * 120.00059 * 359.97438 * 18 17 2 20 20 C 1.50697 * 120.00289 * 179.97438 * 18 17 2 21 21 S 1.81000 * 109.47323 * 179.97438 * 20 18 17 22 22 C 1.76200 * 99.99896 * 179.97438 * 21 20 18 23 23 H 1.08000 * 120.00446 * 359.97438 * 22 21 20 24 24 C 1.38802 * 120.00113 * 179.97438 * 22 21 20 25 25 N 1.31635 * 120.00077 * 179.97438 * 24 22 21 26 26 Si 1.86807 * 119.99868 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46872 * 89.99632 * 26 24 22 28 28 H 1.48497 * 109.46855 * 209.99935 * 26 24 22 29 29 H 1.48496 * 109.46834 * 329.99708 * 26 24 22 30 30 H 1.09001 * 109.47002 * 179.56040 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.56478 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.56306 * 1 2 3 33 33 H 0.97000 * 119.99470 * 334.99416 * 6 4 2 34 34 H 1.07994 * 126.81237 * 0.02562 * 10 9 7 35 35 H 1.09004 * 111.00105 * 206.42306 * 15 4 2 36 36 H 1.08994 * 111.03335 * 82.58852 * 15 4 2 37 37 H 1.08998 * 110.36713 * 278.16811 * 16 15 4 38 38 H 1.09001 * 110.36405 * 155.85087 * 16 15 4 39 39 H 1.09001 * 109.47062 * 299.99551 * 20 18 17 40 40 H 1.09002 * 109.47590 * 59.99313 * 20 18 17 41 41 H 0.97004 * 119.99961 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7512 1.2417 5 1 1.3052 -1.4482 1.6162 6 7 2.4554 0.1929 2.2878 7 6 2.4581 -0.1932 3.5790 8 8 2.1284 -1.3257 3.8757 9 6 2.8612 0.7555 4.6303 10 6 2.9122 0.5237 5.9797 11 7 3.3317 1.6583 6.5402 12 7 3.5238 2.5413 5.6264 13 7 3.2580 2.0566 4.4641 14 1 3.3268 2.5287 3.6196 15 6 3.2877 -1.5151 0.6902 16 6 2.8146 -1.8783 -0.7394 17 7 2.0300 -0.7124 -1.1849 18 6 1.8086 -0.3578 -2.4661 19 8 1.1453 0.6260 -2.7171 20 6 2.3853 -1.1837 -3.5870 21 16 1.9147 -0.4564 -5.1763 22 6 2.6996 -1.5883 -6.2751 23 1 3.2608 -2.4226 -5.8809 24 6 2.5966 -1.4078 -7.6475 25 7 3.1834 -2.2531 -8.4684 26 14 1.6265 0.0356 -8.3295 27 1 2.5277 1.2043 -8.4936 28 1 1.0500 -0.3340 -9.6471 29 1 0.5306 0.3836 -7.3897 30 1 -0.3633 -1.0277 -0.0079 31 1 -0.3633 0.5070 0.8938 32 1 -0.3633 0.5206 -0.8860 33 1 2.7188 1.0960 2.0511 34 1 2.6640 -0.3962 6.4881 35 1 3.4853 -2.4127 1.2763 36 1 4.1658 -0.8702 0.6592 37 1 2.1888 -2.7704 -0.7167 38 1 3.6718 -2.0318 -1.3950 39 1 3.4719 -1.2021 -3.5030 40 1 1.9988 -2.2011 -3.5248 41 1 3.1117 -2.1268 -9.4275 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337899605.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:08 Heat of formation + Delta-G solvation = 3.097439 kcal Electronic energy + Delta-G solvation = -26174.962564 eV Core-core repulsion = 22217.399621 eV Total energy + Delta-G solvation = -3957.562943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.46000 -41.64908 -40.51262 -38.63084 -35.74181 -34.67715 -34.56293 -33.02446 -32.55212 -31.86696 -30.04379 -27.85506 -27.04339 -25.26950 -24.09972 -23.96338 -22.53468 -21.98656 -20.84421 -20.13249 -19.48431 -18.33873 -17.92986 -17.54608 -17.43942 -17.14440 -16.92761 -16.43862 -15.91711 -15.82449 -15.53686 -15.32313 -15.18879 -14.91439 -14.77866 -14.12312 -14.03394 -13.70471 -13.35403 -13.34798 -13.31176 -13.05926 -13.00188 -12.77225 -12.60313 -12.42257 -12.33667 -11.89661 -11.87770 -11.85282 -11.49095 -11.17612 -10.98278 -10.72328 -10.54595 -10.31944 -9.79392 -9.00667 -8.51923 -6.22935 -0.24849 0.93964 1.15436 1.30810 1.32819 1.43947 1.49864 1.51407 1.70153 1.88906 2.10815 2.24182 2.66995 2.86344 3.16649 3.23106 3.43451 3.57120 3.74232 3.86691 3.88467 4.05648 4.09947 4.14411 4.20927 4.25790 4.41965 4.54421 4.63676 4.71757 4.82416 4.91705 4.96393 4.99645 5.17993 5.22914 5.37075 5.61877 5.70214 6.11175 6.13694 6.29600 6.79948 6.93172 7.04328 7.13101 8.60256 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.029967 B = 0.002025 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.132764 B =13824.972014 C =14082.168930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.087 0.913 4 C 0.149 3.851 5 H 0.114 0.886 6 N -0.700 5.700 7 C 0.610 3.390 8 O -0.538 6.538 9 C -0.063 4.063 10 C 0.030 3.970 11 N -0.299 5.299 12 N -0.060 5.060 13 N -0.350 5.350 14 H 0.468 0.532 15 C -0.133 4.133 16 C 0.090 3.910 17 N -0.610 5.610 18 C 0.553 3.447 19 O -0.554 6.554 20 C -0.105 4.105 21 S -0.173 6.173 22 C -0.528 4.528 23 H 0.063 0.937 24 C 0.045 3.955 25 N -0.916 5.916 26 Si 0.914 3.086 27 H -0.262 1.262 28 H -0.261 1.261 29 H -0.236 1.236 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.413 0.587 34 H 0.219 0.781 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 4.798 27.540 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.028 3.972 3 H 0.104 0.896 4 C 0.044 3.956 5 H 0.132 0.868 6 N -0.352 5.352 7 C 0.394 3.606 8 O -0.412 6.412 9 C -0.198 4.198 10 C -0.130 4.130 11 N -0.163 5.163 12 N -0.042 5.042 13 N -0.080 5.080 14 H 0.319 0.681 15 C -0.172 4.172 16 C -0.032 4.032 17 N -0.346 5.346 18 C 0.341 3.659 19 O -0.432 6.432 20 C -0.255 4.255 21 S 0.053 5.947 22 C -0.676 4.676 23 H 0.081 0.919 24 C -0.160 4.160 25 N -0.554 5.554 26 Si 0.736 3.264 27 H -0.187 1.187 28 H -0.185 1.185 29 H -0.160 1.160 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.250 0.750 34 H 0.236 0.764 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.697 6.550 28.004 28.768 hybrid contribution 0.444 -1.105 -1.915 2.255 sum -0.253 5.445 26.089 26.652 Atomic orbital electron populations 1.22112 0.94204 1.02752 1.02789 1.21725 0.95043 0.96693 0.83717 0.89552 1.21975 0.97779 0.90653 0.85227 0.86791 1.45603 1.68056 1.16718 1.04852 1.16609 0.77163 0.85558 0.81250 1.90905 1.48464 1.19721 1.82134 1.22166 1.13085 0.87220 0.97321 1.24316 0.99231 0.99356 0.90124 1.75040 1.16794 1.00008 1.24478 1.78222 1.16833 1.21705 0.87411 1.45605 1.42427 1.08935 1.11070 0.68145 1.23201 0.97647 1.02368 0.94022 1.22646 0.96104 0.88332 0.96142 1.48346 1.53118 1.29538 1.03581 1.19550 0.79601 0.84321 0.82472 1.90690 1.40562 1.28512 1.83441 1.23225 1.05162 1.02921 0.94240 1.84691 1.70945 1.40283 0.98751 1.22446 1.37490 1.13813 0.93826 0.91914 1.25566 0.95517 0.98669 0.96282 1.70018 1.43546 1.37690 1.04138 0.85872 0.80946 0.79758 0.79829 1.18665 1.18492 1.16029 0.92031 0.89659 0.93547 0.74978 0.76396 0.87675 0.88991 0.89463 0.89134 0.87037 0.87249 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.11 71.98 0.66 -2.17 16 2 C 0.13 2.02 3.21 45.34 0.15 2.17 16 3 H 0.09 1.23 7.72 -2.39 -0.02 1.21 16 4 C 0.15 1.51 2.84 46.18 0.13 1.64 16 5 H 0.11 1.35 7.26 -2.38 -0.02 1.34 16 6 N -0.70 -4.44 5.17 -440.36 -2.28 -6.72 16 7 C 0.61 6.49 7.81 86.61 0.68 7.17 16 8 O -0.54 -9.45 16.57 -4.11 -0.07 -9.52 16 9 C -0.06 -0.61 7.17 40.41 0.29 -0.32 16 10 C 0.03 0.38 11.87 84.18 1.00 1.38 16 11 N -0.30 -5.06 12.35 -57.50 -0.71 -5.77 16 12 N -0.06 -0.85 13.35 37.02 0.49 -0.36 16 13 N -0.35 -2.41 6.97 -48.52 -0.34 -2.75 16 14 H 0.47 -0.63 8.32 -219.90 -1.83 -2.46 16 15 C -0.13 -1.25 6.77 31.99 0.22 -1.03 16 16 C 0.09 1.27 6.69 86.85 0.58 1.85 16 17 N -0.61 -12.80 3.06 -788.08 -2.41 -15.22 16 18 C 0.55 17.55 7.66 87.66 0.67 18.23 16 19 O -0.55 -21.80 14.90 -3.04 -0.05 -21.84 16 20 C -0.10 -3.73 5.16 71.24 0.37 -3.36 16 21 S -0.17 -8.44 18.55 -56.49 -1.05 -9.49 16 22 C -0.53 -29.95 10.04 67.95 0.68 -29.26 16 23 H 0.06 3.75 8.03 -2.91 -0.02 3.73 16 24 C 0.05 2.60 5.50 84.86 0.47 3.06 16 25 N -0.92 -54.81 13.97 21.65 0.30 -54.51 16 26 Si 0.91 44.01 27.74 68.60 1.90 45.92 16 27 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 28 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 29 H -0.24 -11.33 6.74 99.48 0.67 -10.66 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 1.15 6.88 -2.39 -0.02 1.14 16 33 H 0.41 0.31 7.64 -92.71 -0.71 -0.40 16 34 H 0.22 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.26 7.48 -2.39 -0.02 1.24 16 39 H 0.11 3.63 7.85 -2.39 -0.02 3.62 16 40 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -80.22 363.79 0.20 -80.02 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -1.48 Total: 0.89 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 5.88 Total: -0.66 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -4.94 Total: -85.31 kcal Atomic # 8 Polarization: -31.25 SS G_CDS: -0.11 Total: -31.36 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -80.22 0.20 -80.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337899605.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.114 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds